Spelling suggestions: "subject:"inducible gene expression"" "subject:"nducible gene expression""
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Sucrose breakdown in the potato tuber / Sucrose breakdown in the potato tuberJunker, Björn H. January 2004 (has links)
In dieser Arbeit wurden verschiedene Ansätze verfolgt, um das Verständnis des Saccharose-zu-Stärke Stoffwechselweges in sich entwickelnden Kartoffelknollen zu untersuchen. Zunächst wurde ein induzierbares Genexpressions-System aus dem Schimmelpilz Aspergillus nidulans für die Untersuchung des Metabolismus von Kartoffelknollen optimiert. Es wurde herausgefunden, dass dieses sogenannte alc system schneller auf Acetaldehyd reagiert als auf Ethanol, und dass Acetaldehyd weniger Seiteneffekte auf den Metabolismus hat. Die optimalen Induktionsbedingungen wurden dann benutzt um die Effekte einer zeitlich kontrollierten zytosolischen Expression einer Hefe-Invertase auf den Metabolismus der Kartoffelknolle zu untersuchen. Die beobachteten Unterschiede zwischen induzierter und konstitutiver Expression der Invertase führten zu der Feststellung, dass die Glycolyse erst induziert wird nachdem ein ATP-Mangel durch erhöhtes Saccharose-Cycling kreiert wurde. Weiterhin lassen die Ergebnisse darauf schließen, dass Maltose in der Kartoffelknolle eher ein Produkt der Kondensation zweier Glucose-Einheiten ist statt ein Produkt des Stärke-Abbaus zu sein. Im zweiten Teil dieser Arbeit wurde gezeigt, dass die Expression einer Hefe-Invertase in der Vakuole von Kartoffelknollen ähnliche Effekte auf deren Metabolismus hat wie die Expression des gleichen Enzymes im Apoplasten. Diese Beobachtung ist ein weiterer Beleg für die Präsenz eines Mechanismus, bei dem Saccharose mittels Endozytose in die Vakuole aufgenommen wird anstatt über Transporter direkt ins Zytosol aufgenommen zu werden. Zum Schluß wird ein kinetisches Modell des Saccharose-Abbaus vorgestellt, das in der Lage ist diesen Teil des Stoffwechsels der Kartoffelknolle quantitativ zu simulieren. Weiterhin kann dieses Modell die metabolischen Effekte der Einführung einer Hefe-Invertase in das Zytosol von Kartoffelknollen mit erstaunlicher Präzision vorhersagen. Zusammengefasst zeigen die Ergebnisse dieser Arbeit, dass induzierbare Genexpression sowie Computermodelle von Stoffwechselwegen nützliche Hilfsmittel für eine Verbesserung des Verständnisses des Pflanzenmetabolismus sind. / In this work different approaches are undertaken to improve the understanding of the sucrose-to-starch pathway in developing potato tubers. At first an inducible gene expression system from fungal origin is optimised for the use of studying metabolism in the potato tuber. It is found that the alc system from Aspergillus nidulans responds more rapidly to acetaldehyde than ethanol, and that acetaldehyde has less side-effects on metabolism. The optimal induction conditions then are used to study the effects of temporally controlled cytosolic expression of a yeast invertase on metabolism of potato tubers. The observed differences between induced and constitutive expression of the invertase lead to the conclusion that glycolysis is induced after an ATP demand has been created by an increase in sucrose cycling. Furthermore, the data suggest that in the potato tuber maltose is a product of glucose condensation rather than starch degradation. In the second part of the work it is shown that the expression of a yeast invertase in the vacuole of potato tubers has similar effects on metabolism than the expression of the same enzyme in the apoplast. These observations give further evidence to the presence of a mechanism by which sucrose is taken up via endocytosis to the vacuole rather than via transporters directly to the cytosol. Finally, a kinetic in silico model of sucrose breakdown is presented that is able to simulate this part of potato tuber metabolism on a quantitative level. Furthermore, it can predict the metabolic effects of the introduction of a yeast invertase in the cytosol of potato tubers with an astonishing precision. In summary, these data prove that inducible gene expression and kinetic computer models of metabolic pathways are useful tools to greatly improve the understanding of plant metabolism.
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The identification of novel regulatory elements in the promoters of heat shock response genesNcube, Sifelani January 2010 (has links)
The main objective of this study was to investigate promoter sequences of putative HSR genes for the presence of unique regulatory elements and modules that might be involved in the regulation of HSR. In order to achieve this objective, an in silico promoter analysis strategy was devised, which focused on the identification of promoter sequences and regulatory elements, and modelling of promoter modules by using Genomatix software tools such as MatInspector and ModelInspector. Results showed that two modules (EGRF_SP1F_01 and SP1F_CEBP_01) were conserved in the promoter sequences of three well-known Hsp-genes (Hsp90, Hsp105β and αβ-crystallin). Screening the 60 target gene promoters for the presence of the two modules revealed that 12 genes (20 %) contained both modules. These included Moesin, Proline-4 hydroxylase, Poly(A) binding protein and Formin-binding protein. None of these genes had been previously associated with heat shock response.
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The identification of novel regulatory elements in the promoters of heat shock response genesNcube, Sifelani January 2010 (has links)
The main objective of this study was to investigate promoter sequences of putative HSR genes for the presence of unique regulatory elements and modules that might be involved in the regulation of HSR. In order to achieve this objective, an in silico promoter analysis strategy was devised, which focused on the identification of promoter sequences and regulatory elements, and modelling of promoter modules by using Genomatix software tools such as MatInspector and ModelInspector. Results showed that two modules (EGRF_SP1F_01 and SP1F_CEBP_01) were conserved in the promoter sequences of three well-known Hsp-genes (Hsp90, Hsp105β and αβ-crystallin). Screening the 60 target gene promoters for the presence of the two modules revealed that 12 genes (20 %) contained both modules. These included Moesin, Proline-4 hydroxylase, Poly(A) binding protein and Formin-binding protein. None of these genes had been previously associated with heat shock response.
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The identification of novel regulatory elements in the promoters of heat shock response genesNcube, Sifelani January 2010 (has links)
Masters of Science / The main objective of this study was to investigate promoter sequences of putative HSR genes for the presence of unique regulatory elements and modules that might be involved in the regulation of HSR. In order to achieve this objective, an in silico promoter analysis strategy was devised, which focused on the identification of promoter sequences and regulatory elements, and modelling of promoter modules by using Genomatix software tools such as MatInspector and ModelInspector. Results showed that two modules (EGRF_SP1F_01 and SP1F_CEBP_01) were conserved in the promoter sequences of three well-known Hsp-genes (Hsp90, Hsp105β and αβ-crystallin). Screening the 60 target gene promoters for the presence of the two modules revealed that 12 genes (20 %) contained both modules. These included Moesin, Proline-4 hydroxylase, Poly(A) binding protein and Formin-binding protein. None of these genes had been previously associated with heat shock response. / South Africa
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