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Infobiotics Workbench: An In Silico Software Suite for Computational Systems BiologyZhang, G., Pérez-Jiménez, M.J., Riscos-Núñez, A., Verlan, S., Konur, Savas, Hinze, T., Gheorghe, Marian January 2021 (has links)
Yes / This chapter presents the Infobiotics Workbench (IBW), an integrated software suite developed for computational systems biology. The tool is built upon stochastic P systems, a probabilistic extension of P systems, as modelling framework. The platform utilises computer-aided modelling and
analysis of biological systems through simulation, verification and optimisation. IBW allows modelling and analysing not only cell level behaviour, but also multi-compartmental population dynamics. This enables comparing be tween macroscopic and mesoscopic interpretations of molecular interaction
networks and investigating temporo-spatial phenomena in multicellular systems. These capabilities make IBW a useful, coherent and comprehensive in silico tool for systems biology research.
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Membrane Computing Models: ImplementationsZhang, G., Pérez-Jiménez, M.J., Riscos-Núñez, A., Verlan, S., Konur, Savas, Hinze, T., Gheorghe, Marian 17 March 2022 (has links)
No / Presents comprehensive descriptions of the most significant membrane computing tools developed for various models
Describes the most relevant applications, facilitating a better understanding of how the tools are used in building, experimenting with and analysing membrane computing models of complex problems arising in robotics, automatic design of P systems, image processing, ecosystem modelling, systems and synthetic biology, and bioinformatics
Discusses efficient software and hardware solutions, together with the algorithms and platforms used
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