Thesis (M.Sc.)--York University, 2008. Graduate Programme in Biology. / Typescript. Includes bibliographical references (leaves 185-210). Also available on the Internet. MODE OF ACCESS via web browser by entering the following URL: http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&res_dat=xri:pqdiss&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&rft_dat=xri:pqdiss:MR45967

Forkhead transcription factor FOXO4 is involved in a wide range of processes including metabolism control, cell cycle regulation, apoptosis, DNA repair or oxidative stress resistance. The crystal structure of FOXO4 DNA-binding domain bound to the target DNA revealed that FOXO4 interacts with DNA in the same manner as other forkhead proteins. The DNA-binding interface consists of helix H3, which binds to the major groove of DNA, the N- terminal segment and flexible loops located at the C-terminus of forkhead domain. However, many questions concerning the regulation of DNA-binding specificity and the role of different parts of forkhead domain in this process remain elusive. In this diploma thesis, the interactions between the DNA-binding domain of FOXO4 and DNA with various sequences were studied. The DNA-binding domain of FOXO4 and its mutants were expressed and purified and their DNA-binding properties were studied using fluorescence spectroscopy techniques and surface plasmon resonance. Results of these experiments revealed that the nucleotide sequence at the 5′ end of the consensus binding motif affects the stability of the complex between the DNA-binding domain of FOXO4 and DNA. In addition, the importance of individual amino acid residues of FOXO4 that are involved in DNA binding for the...

The MCM helicase plays an important role in eukaryotic DNA replication, unwinding double stranded DNA ahead of the replication fork. MCM is a hetero-hexamer consisting of the six related proteins, Mcm2-Mcm7. The distantly related MCM-binding protein (MCM-BP) was first identified in a screen for proteins interacting with MCM2-7 in human cells and was found to specifically interact with Mcm3-7 but not Mcm2. It is conserved in most eukaryotes and seems to play an important role in DNA replication but its exact function is not clear yet. This study contributes to the understanding of the fission yeast homologue of MCM-BP, named Mcb1, but also of MCM-BP in general. Results presented in this thesis document the initial biochemical characterisation of the complex Mcb1 forms with Mcm proteins, the MCMᴹᶜᵇ¹ complex. Interactions of Mcb1 with Mcm proteins, potential interaction sites between the proteins and the size of the complex were analysed using a variety of methods, including tandem affinity purification, co-immunoprecipitation, sucrose gradients and in vitro pull-down assays. Sequence analysis and structure prediction were utilised to gain some insight into Mcb1 and MCM-BP ancestry and structure. Results presented here indicate that fission yeast Mcb1 shares homology with Mcm proteins and forms a complex with Mcm3-Mcm7 but not Mcm2 and thus replaces the latter in an alternative high molecular weight complex that is likely to have an MCM-like appearance. Deletion of mcb1⁺ showed that Mcb1 is essential in fission yeast. To examine the cellular function of the protein, temperature-sensitive mutants were generated. Inactivation of Mcb1 leads to an increase in DNA damage and cell cycle arrest in G2-phase depending on the activation of the Chk1 dependent DNA damage checkpoint. Similar observations were made when Mcb1 was overexpressed, indicating that certain levels of the protein are important for accurate DNA replication. Construction of truncated versions of Mcb1 suggested that almost the full-length protein is needed for proper function.

La cycloaddition 1,3-dipolaire catalysée par le cuivre(I) entre un azoture et un alcyne (CuAAC), réaction de « chimie click » par excellence, suscite un grand intérêt en raison de son efficacité et de sa versatilité. L'objectif premier de cette thèse est d'appliquer cette réaction pour l'élaboration de structures 1,2,3-triazoles fonctionnalisées, en vue d'obtenir des ligands jouant le rôle de « pince à platine ». Les complexes de platine biologiquement actifs rapportés sont de type mono- ou bi-nucléaire et comportent un ou deux cycles triazole. Les complexes obtenus ont fait l'objet d'une étude in vitro d'interaction avec des nucléosides et de l'ADN soit sous forme d'hairpin (épingle à cheveux) soit sous forme plasmidique. Nos complexes ont montrés une réactivité similaire à celle du cisplatine, qui est la métallodrogue de référence. En parallèle, nous présentons les propriétés catalytiques et biologiques de complexes cuivre(I)-NHC (Carbène N-Hétérocyclique), dérivés du [CuCl(SIMes)], mis au point par Nolan et al. Dans un premier temps, un criblage d'activités catalytiques a été réalisé avec divers additifs aromatiques azotés afin d'améliorer l'efficacité de la CuAAC. Dans un deuxième temps, la cytotoxicité et l'activité antitumorale du complexe [CuCl(SIMes)] ont été considérées sur plusieurs lignées cellulaires. Nous rapportons ici, le premier exemple de cuivre(I)-NHC biologiquement actif, présentant une activité largement supérieure à celle du cisplatine. Enfin, la réactivité de ce complexe avec de l‟ADN plasmidique a été évaluée in vitro et nous rapportons sa capacité à couper l‟ADN. / The copper(I)-catalyzed alkyne-azide cycloaddition (CuAAC), a “click chemistry” reaction, is of a great interest thanks to its efficiency and versatility. The present work aims to use this reaction for the elaboration of new functionalised 1,2,3-triazole, as “pincer ligand” to platinum. We have synthesized mono- or binuclear platinum anticancer complexes that contain one or two triazole cycles. These complexes were subject to in vitro tests, in order to investigate the interactions they can establish with both nucleosides and DNA. The results reveal a reactivity similar to cisplatin, the reference metallodrug. In parallel, we present the catalytic and biological properties of copper(I)-NHC complexes, like [CuCl(SIMes)] developed by Nolan et al. At first, a screening of the catalytic activity was realized with diverse nitrogen aromatics additives in order to improve the CuAAC efficiency. Secondly, the cytotoxicity and antitumoral activity of [CuCl(SIMes)] were considered on various cancer cell lines. We report here, the first example of a biologically active copper(I)-NHC, this complexe exhibiting a superior activity than cisplatin. Finally, the reactivity of this copper(I)-NHC with DNA was evaluated in vitro and highlights its capacity to cleave DNA.

Influenza virus causes severe respiratory infections in birds and mammals and it is responsible for up to half a million deaths of human beings worldwide each year. Two molecular targets in influenza viral life cycle, neuraminidase and M2 proton channel are exploited in treatment. However, the recent emergence of new pandemic type along with increasing resistance against approved drugs has urged the need for a new drug target discovery and potential search of its inhibitor. Recently, an interesting protein-protein interaction between two subunits PA and PB1 of influenza A viral polymerase has been identified by X-ray crystallography as a new promising drug target. The fact that relatively few residues drive the binding and that the binding interface is highly conserved presents an intriguing possibility to identify antiviral lead compounds effective against all subtypes of influenza A virus. In our laboratory, we expressed and purified two fusion tag constructs of the recombinant C-terminal domain of polymerase acidic subunit (CPA) from the pandemic isolate A/California/07/2009 H1N1. First, GST-CPA fusion protein was used for kinetic evaluation of PA-PB1 interaction by surface plasmon resonance. Moreover, this construct was used in the development of high-throughput screening method for search of...

Influenza virus causes severe respiratory infections in birds and mammals and it is responsible for up to half a million deaths of human beings worldwide each year. Two molecular targets in influenza viral life cycle, neuraminidase and M2 proton channel are exploited in treatment. However, the recent emergence of new pandemic type along with increasing resistance against approved drugs has urged the need for a new drug target discovery and potential search of its inhibitor. Recently, an interesting protein-protein interaction between two subunits PA and PB1 of influenza A viral polymerase has been identified by X-ray crystallography as a new promising drug target. The fact that relatively few residues drive the binding and that the binding interface is highly conserved presents an intriguing possibility to identify antiviral lead compounds effective against all subtypes of influenza A virus. In our laboratory, we expressed and purified two fusion tag constructs of the recombinant C-terminal domain of polymerase acidic subunit (CPA) from the pandemic isolate A/California/07/2009 H1N1. First, GST-CPA fusion protein was used for kinetic evaluation of PA-PB1 interaction by surface plasmon resonance. Moreover, this construct was used in the development of high-throughput screening method for search of...