Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Biology; and the Woods Hole Oceanographic Institution), 2011. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Larval supply is an important process linking reproductive output to recruitment of benthic marine invertebrates. Few species-specific studies of bivalve larvae have been performed due to the lack of suitable methods for species identification. This thesis focused on applying a method to identify larvae from field samples from Waquoit Bay, MA using shell birefringence patterns. This method was then used to address variability in larval supply for three bivalve species on weekly, tidal, and hourly scales. Sampling weekly for six months during two years showed large variability in larval concentrations on this time scale. Abundances of most species were related to bay temperature, and species distributions among sampling sites were indicative of transport potential and population coherence. Greater growth of larvae in 2009 compared to 2007 was attributed to more wind-induced mixing and better food availability in 2009. Integrative samples over each tidal event for a 14-day period demonstrated that larvae were mostly constrained by water masses. During a period when there were sharp tidal signals in temperature and salinity, larval concentrations were higher in bay water compared to coastal waters on incoming tides. After a storm event, water mass properties were less distinct between tidal events and a semidiurnal signal in larval concentrations was no longer apparent. The timing of periods of high larval concentrations did not always coincide with periods of highest water mass flux reducing net export in some cases. On an hourly scale, the vertical distribution of larvae affected by water column stratification and strength of tidal flow. Strong currents and a fresh upper layer both prevented larvae from concentrating at the surface. There was little evidence of peaks in larval concentrations associated with a given tidal period. Species-specific data can provide new perspectives on larval transport. For the three species studied, Anomia simplex, Guekensia demissa, and Mercenaria mercenaria, different source areas, patterns for growth, and potential for export were observed. Applying species-specific identification methods to future studies of bivalve larval transport has the potential to relate larval abundance to settlement patterns, an important component of larval ecology and shellfish management. / by Christine Mingione Thompson. / Ph.D.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences, and the Woods Hole Oceanographic Institution), 2003. / Includes bibliographical references (p. 132-139). / Iron (Fe) is an essential micronutrient for marine phytoplankton often limiting phytoplankton growth due to its low concentration in the ocean and thus playing a role in modulating the ocean's biological pump. In order to understand controls on global Fe distribution, the decoupling between Fe and P04 and the sensitivity of surface nutrient concentrations to changes in aeolian iron supply, I use a hierarchy of ocean circulation and biogeochemistry models. I formulate a mechanistic model of iron cycling which includes scavenging onto sinking particles and complexation with an organic ligand. The iron cycle is coupled to a model of the phosphorus cycle. The aeolian source of iron is prescribed. This system is examined in the context of a highly idealized box model. With appropriate choice of parameter values, the model can be brought into consistency with the relatively sparse ocean observations of iron in the oceans. I implement this biogeochemical scheme in a coarse resolution ocean general circulation model, guided by the box model sensitivity studies. This model is also able to reproduce the broad regional patterns of iron and phosphorus. In particular, the high macro-nutrient concentrations of the Southern Oceans result from iron limitation in the model. I define a tracer, Fe* that quantifies the degree to which a water mass is iron limited. Surface waters in high nutrient, low chlorophyll regions have negative Fe* values, indicating Fe limitation, because aeolian surface dust flux is not sufficient to / (cont.) compensate for the lack of iron in upwelled waters. The oceanic residence time of Fe is [approximately] 285 years in the model, confirming that transport plays an important role in controlling deep water [Fe[Tau]]. Globally, upwelling accounts for 40% of 'new' iron reaching the euphotic zone. Due to the potential ability of iron to change the efficiency of the carbon pump in the remote Southern Ocean, I study Southern Ocean surface P04 response to increased aeolian dust flux. My box model results suggest that a global ten fold increase in dust flux can support a P04 drawdown of [approximately]0.25[mu]M, while the GCM results suggest a P04 drawdown of 0.5 [mu]M. / by Payal Parekh. / Ph.D.

Thesis (Ph. D.)--Joint Program in Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric and Planetary Sciences; and the Woods Hole Oceanographic Institution), 1999. / Includes bibliographical references. / This study is a geochemical investigation of the evolution of the Kerguelen plume, on the basis of upper mantle and lower crustal xenoliths. Ultramafic xenoliths include harzburgites predominant, a lherzolite, dunites and pyroxenites, whereas lower crustal xenoliths are cumulate gabbros recrystallized under granulite facies conditions. On the basis of the whole rock major element characteristics and trace element abundance patterns in clinopyroxenes, the harzburgites were found to be residues of extensive melting at high pressures within the Kerguelen plume. These were then recrystallized at low pressures and metasomatized by plume generated melts. Details of the metasomatic process were determined from trace element variations in clinopyroxene in connection to texture. This demonstrated that meltrock reaction and the precipitation of new clinopyroxenes occurred by metasomatic carbonatitic melts. It was also found that some of the harzburgites had distinctly unradiogenic Os isotopic compositions and were identified as originating from the sub-Gondwanaland lithosphere. On the basis of major and trace element compositions, the granulite xenoliths were found to be originally gabbroic cumulates formed from plume-derived basaltic melts emplaced at the base of the crust by underplating and subsequently recrystallized isobarically under granulite conditions. The Sr, Nd and Os isotopic compositions of the peridotite and granulite xenoliths demonstrate that the Kerguelen plume is isotopically heterogeneous and displays a temporal progression toward more enriched Sr and Nd isotopic compositions from the Ninetyeast Ridge to granulite xenoliths to Kerguelen basalts and Heard Island basalts. / by Deborah Renee Hassler. / Ph.D.

Thesis (Ph. D.)--Joint Program in Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 1998. / Includes bibliographical references (v. 2, leaves 423-433). / The goal of this thesis is to develop a methodology to interpret sound scattered from the seafloor in terms of seafloor structure and subseafloor geological properties. Specifically, this work has been directed towards the interpretation of matched-filtered, beam-formed monostatic acoustic reverberation data acquired on the west flank of the Mid-Atlantic Ridge when the seafloor is insonified by a band-limited, lowgrazing- angle acoustic pulse. This research is based on the hypothesis that observed backscatter signals are produced by a combination.of seafloor (interface) scattering and subseafloor (volume) scattering from structure having variations at scale lengths similar to the wavelength of the insonifying acoustic field. Analysis of monostatic reverberation data acquired during the Site A experiment (Run 1) of the Acoustic Reverberation Special Research Program 1993 Acoustics Cruise suggests that the scattered signals cannot be accounted for quantitatively in terms of large-scale slope, even though a strong correspondence between high intensity backscatter and seafloor ridges is observed. In order to investigate and quantify the actual sources of seafloor scattering, a numerical modeling study of seafloor models is undertaken using a finitedifference solution to the elastic wave equation. Geological data available at Site A and published reports describing geological properties of similar deep ocean crustal regions are used to develop a realistic seafloor model for the study area with realistic constraints on elastic parameters. Wavelength-scale heterogeneity in each model, in the form of seafloor roughness and subseafloor volume heterogeneity is defined using stochastic distributions with Gaussian autocorrelations. These distributions are quantified by their correlation lengths and standard deviation in amplitude. In order to incorporate all seafloor structure in a single parameterization of seafloor scattering, large-scale slope and wavelength-scale seafloor spatial parameters (rms height and correlation length), are included, along with the acoustic beam grazing-angle relative to a horizontal seafloor, in the definition of an 'effective grazing angle'. The Rayleigh roughness parameter, which depends on grazing angle of the insonification, is then redefined using the effective grazing angle and calculated for a variety of seafloor models. Scattering strengths are shown to vary systematically but nonlinearly with the 'effective Rayleigh roughness parameters' of horizontal rough seafloor models. This leads to an approximate interpretation scheme for backscatter intensity. In general, variation in backscattering is found to be dominated by the scattering from rough seafloor. If the seafloor is smooth or very low velocity (e.g., sediment), then scattering from volume heterogeneity becomes an important factor in the backscattered field. Both wavelength-scale seafloor roughness and volume heterogeneity are shown to be capable of producing the levels of variation in intensity observed in monostatic reverberation experiments. Variations in large-scale seafloor slope and subseafloor average velocity are shown to influence the backscatter response of seafloor models. / by Robert John Greaves. / Ph.D.

Thesis: S.M., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), September, 2020 / Cataloged from student-submitted PDF version of thesis. / Includes bibliographical references (pages 97-102). / Robotic swarms are becoming increasingly complex on the surface and in air due to highspeed and reliable communication links, Global Positioning Satellites (GPS), and visual support to relative navigation. However, the limited propagation of these signals in the ocean has impacted similar advances in undersea robotics. Autonomous underwater vehicles (AUVs) often rely on acoustics to inform navigation solutions; however, this approach presents challenges for scalable robotic swarms. Acoustic navigation is a means to inform range and bearing to a target. Many methods for range and bearing estimation, including current low-cost solutions, rely on precision time synchronization or two-way communication to compute ranges as part of a full navigation solution. The high cost of reliable Chip-scale atomic clocks (CSACs) and acoustic modems relative to other vehicle components limits large-scale swarms due to the associated cost-per-vehicle and communications infrastructure. / We propose a single, high-cost vehicle with a reliable navigation solution as a "leader" for a scalable swarm of lower-cost vehicles that receive acoustic signals from a source onboard the lead vehicle using a single hydrophone. These lower-cost "followers" navigate relative to the leader according to the preferred behavioral pattern, but for simplicity, we will refer to a simple following behavior in this work. This thesis outlines a method to obtain range estimates to sound sources in which the signal content, including frequency and power at its origin, can be reasonably approximated. Total transmission loss is calculated based on empirical equations for the absorption of sound in seawater and combined with geometric spreading loss from environmental models to estimate range to a source based on the loss at differential frequencies. We refer to this calculation as the signal absorption-based range estimator (SABRE). / This method for obtaining range combines with Doppler-shift methods for target bearing based on the maximum frequency detected within a banded limit around a known source frequency. A primary objective for SABRE is to address techniques that support low-cost options for undersea swarming. This thesis's contributions include a novel method for range estimation onboard underwater autonomous vehicles that supports navigation relative to a known source when combined with Doppler-shift methods for target bearing. This thesis seeks to develop the theory, algorithms, and analytical tools required and apply those tools to real-world data sets to investigate the feasibility, sources of error, and accuracy of this new approach to range estimation for underwater swarms. / by Brendan O'Neill. / S.M. / S.M. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution)

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2020 / Cataloged from student-submitted PDF of thesis. "September 2020." / Includes bibliographical references. / Speleothems, or sedimentary rocks formed in caves, act as valuable archives of past climate change due to their suitability for U-series dating and high-resolution proxy analysis. These records can provide insights into water availability and controls on hydrology prior to the instrumental record. In this thesis, I present three records from newly-analyzed Mexican stalagmites using stable isotope (oxygen and carbon) and trace element to calcium (Mg/Ca and Sr/Ca) ratios as proxies for changing hydroclimate. Chapter 2 presents a precisely dated, mid- Holocene record of high rainfall and limited precipitation variability in the Yucatan Peninsula, Mexico. Chapters 3 and 4 present novel climate records from northeastern Mexico, an understudied region of North America. Both records come from cave sites within the Mexican arid zone, which is simultaneously experiencing increased water scarcity and a rapidly growing population. In Chapter 3, I examine a speleothem from the first millennium of the Common Era, which showed that there is a precipitation dipole between northern and southern Mexico. Chapter 4 highlights, for the first time at decadal resolution, the northeast Mexican response to the 8.2 ka event and the Younger Dryas. These chapters show that the San Luis Potosí region is vulnerable to droughts under multiple climate mean states, and is subject to drying as Atlantic Meridional Overturning Circulation weakens due to anthropogenic climate change. The climate records detailed in this thesis improve our understanding of controls on Mexican hydroclimate and can serve as benchmarks for climate models. / by Gabriela Serrato Marks. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)

Thesis: S.M., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2020 / Cataloged from student-submitted PDF of thesis. / Includes bibliographical references (page 85). / Advances in the miniaturization of microelectronics has greatly contributed to the proliferation of small, low cost autonomous underwater vehicles (AUVs). These affordable vehicles offer organizations a flexible platform that can be adapted to support a multitude of research goals. The small size and low entry cost come with a trade off of simple navigation systems, typically dead reckoning (DR) using a speed determined via propeller counts and heading from a low cost micro-electromechanical system (MEMS) inertial measurement unit (IMU), whose error grows unbounded without the availability of a ground referenced fix source and is compounded by the bias present in the speed measurement due to the change in hydrodynamics from the addition of sensors to the hull form. Additionally, some capabilities such as water current velocity measurement traditionally requires the addition of equipment that is not only expensive, but also whose size and power consumption can adversely affect operating characteristics and deployment times. This thesis expands on previous research using one-way travel time inverted USBL (OWTT-iUSBL) to calculate the local current velocity without the addition of a Doppler velocity log (DVL) or acoustic Doppler current profiler (ADCP). A novel extended Kalman filter (EKF) is proposed that, in addition to calculating the current velocity, estimates and corrects for the bias present in the speed measurement as determined by the main vehicle computer. Using data collected on the Charles River at the Massachusetts Institute of Technology (MIT) Sailing Pavilion, it is shown that current velocities can be reasonably calculated using OWTT-iUSBL data as compared to the values calculated using long baseline (LBL) data. / by Christopher R. Dolan. / S.M. / S.M. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution)

Thesis: S.M., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), September, 2020 / Cataloged from student-submitted PDF version of thesis. / Includes bibliographical references (pages 73-74). / Underwater Vehicles generally have control fins located only near their aft end, for making controllable changes in directions. This design allows for stability of control; however, the turns are typically large in comparison to the vehicle body length. Some bony fish, such as tuna, on the other hand, have deployable ventral and dorsal fins located towards the front of their body, in addition to their other fins. Their deployable fins allow them to modulate their hydrodynamic behavior in response to their environment. Tunas keep these fins retracted during steady cruising, and then deploy them during rapid maneuvers. However, the details of these hydrodynamic effects are not well understood. To investigate this phenomena, using a REMUS 100 as a model, a pair of vertical fins was added at different hull positions, to investigate the effects of fin location on the horizontal plane hydrodynamics, through: stability parameters, nonlinear simulation, and towing tank experiments. Depending on the added fin location, the stability of the vehicle changed, thereby affecting the maneuverability. As fins were placed further forward on the vehicle, maneuverability increased, with effects tapering off at 0.2 BL ahead of the vehicle's center of buoyancy. This investigation explored how rigid underwater vehicles could benefit from added fins, without drastically changing the design of current vehicles. / by Nastasia Elizabeth Winey. / S.M. / S.M. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution)

Thesis: S.M., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), September, 2020 / Cataloged from student-submitted PDF version of thesis. / Includes bibliographical references (pages 103-107). / This thesis examines the transition of a vessel from the open ocean, where collisions are rare, to a high risk and heavy traffic area such as a Traffic Separation Scheme (TSS). Previous autonomy approaches generally view path planning and collision avoidance as two separate functions, i.e. a vessel will follow the planned path until conditions are met for collision avoidance algorithms to take over. Here an intermediate phase is proposed with the goal of adjusting the time of arrival to a high vessel density area so that the risk of collision is reduced. A general algorithm that calculates maximum future traffic density for all choices in the speed domain is proposed and implemented as a MOOS-IvP behavior. This behavior gives the vessel awareness of future collision risks and aids the collision avoidance process. This new approach improves the safety of the vessel by reducing the number of risky encounters that will likely require the vessel to maneuver for safety. / by John Zhang Li. / S.M. / S.M. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution)

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2020 / Cataloged from student-submitted PDF of thesis. / Includes bibliographical references (pages 211-226). / Atlantic hurricanes threaten growing coastal populations along the U.S. coastline and in the Caribbean islands. Unfortunately, little is known about the forces that alter hurricane activity on multi-decadal to centennial timescales. This thesis uses proxy development and proxy-model integration to constrain the spatiotemporal variability in hurricane activity in the Bahama Archipelago over the past millennium. I present annually-resolved archives of storm activity stretching over the past 1000 to 1500 years in sediment cores from blue holes on three islands in the Bahama Archipelago: South Andros Island, Long Island, and Middle Caicos Island. I explore the sensitivity of each site to coarse-grained sediment deposition for modern storms. I find that the local geomorphologic conditions and the angle of approach and size of passing storms play a more important role in inducing coarse-grained sediment transport than storm intensity. / All three paleorecords capture multi-decadal and longer periods of elevated hurricane activity over the past millennium. Dramatic differences between these records suggest localized controls on the hurricane patterns observed by each island. Thus, compiling the records from this thesis together more accurately captures regional variations in hurricane strikes. Integrating our new Bahama Archipelago compilation with compiled paleohurricane records from the U.S. coastline indicates shifting patterns of hurricane activity over the past millennium between the Gulf Coast and the Bahama Archipelago/New England. I attribute these shifting storm patterns to changes in local environmental conditions and/or large-scale variations in hurricane tracks. Finally, I address whether variability in hurricane strikes observed in Bahamian paleohurricane records is related to climate or random variability. / Using a large suite of synthetic storms run over past millennium climate, I generate 1000 pseudo paleohurricane records containing centennial-scale signal like our proxy reconstructions. However, the signal observed in any individual record of paleohurricane activity from the Bahama Archipelago is driven more by random variability in hurricane tracks than by climate. This thesis lays the groundwork for creating high-resolution paleohurricane records from coastal karst basins and using hurricane models to inform our interpretations of these records. / by Elizabeth Jane Wallace. / Ph. D. / Ph.D. Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution)