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Access to abstract permanently restricted to Ball State community only / Access to thesis permanently restricted to Ball State community only / Department of Physiology and Health Science

Vesicle associated membrane protein 2 (VAMP 2) is a synaptic vesicle protein involved with exocytosis in many different cell types, such as pancreatic cells, parotid salivary cells, adrenal cells, skeletal cells, and adipocytes. Also, white blood cells such as eosinophils, neutrophils, and mast cells have been characterized to process VAMP 2. In this study, we tested the hypothesis that VAMP 2 is associated with the vesicle population in rabbits B lymphocytes and may serve as the v-SNARE for vesicular antibody release. Two Rabbit B lymphoblast cell lines were used to detect the presence of VAMP 2, which are the 240 E IgG secreting plasmacytoma-like cell line and 55D1 IgM surface expressing cells. The cell lines were broken down into vesicle and plasma membrane fractions. Immune dot blots demonstrated VAMP 2 was positive in the vesicle fraction of both cell lines. However, VAMP 2 was expressed more by the 240 E IgG secreting cell line. Western blots displayed diverse results with bands that ran at or below 20 KDa, which is consistent with the known molecular weight bands for VAMP 2 of 12.6 kDa and 18 kDa. Our results suggested that VAMP 2 is associated with the vesicle population in rabbit B lymphocytes and could serve as the v- SNARE for vesicular antibody release. / Access to thesis permanently restricted to Ball State community. / Department of Physiology and Health Science

VAMP-7 has been found to interact with SNAP-23, a t-SNARE that functions in relocating granule membranes in response to stimulation, and plays a large role in the regulation of granule release from mast cells in response to an allergic reaction. While evidence suggests that VAMP-7 is active in antibody release in the innate immune system, little investigation has been completed on VAMP-7 interaction in specific antibody release of B lymphocytes of the humoral immune system. Little research has previously focused on vesicular transport within B lymphocytes, leaving molecular mechanisms within B lymphocytes a mystery. Immunodot blots, western blots, and immunoflourescent microscopy were all utilized with the goal of identifying the presence of VAMP- 7. Immunobot blots for both 55D1 and 240E cells were all negative for the presence of VAMP-7. However, VAMP-7 was detected using immunoflourescent microscopy in both 55D1 and 240E cell lines. / Access to thesis permanently restricted to Ball State community. / Department of Physiology and Health Science

The basic unit of life is the cell, from single-cell bacteria to the largest creatures on the planet. All cells have DNA, which contains the blueprint for proteins. This information is transported in the form of messenger RNA from the genome to ribosomes where proteins are produced. Proteins are the main functional constituents of the cell, they usually have one or several functions and are the main actors in almost all essential biological processes. Proteins are what make the cell alive. Proteins are found as solitary units or as part of large complexes. Proteins can be found in all parts of the cell, the most common place being the cytoplasm, a central space in all cells. They are also commonly found integrated into or attached to various membranes. Membranes define the cell architecture. Proteins integrated into the membrane have a wide number of responsibilities: they are the gatekeepers of the cell, they secrete cellular waste products, and many of them are receptors and enzymes. The main focus of this thesis is the study of protein interactions, from the molecular level up to the protein domain level. In paper I use reoccurring local protein structures to try and predict what sections of a protein interacts with another part using only sequence information. In papers II and III we use a randomization approach on a membrane protein motif that we know interacts with a sphingomyelin lipid to find other candidate proteins that interact with sphingolipids. These are then experimentally verified as sphingolipid-binding. In the last paper, paper IV, we look at how protein domain interaction networks overlap and can be evaluated. / <p>At the time of the doctoral defense, the following paper was unpublished and had a status as follows: Paper 3: Manuscript.</p>

Enclosed reprint of author's article: `Outer membrane of Eschericherichia coli k-12`, published in J. of Bacteriology, 1976, v. 127, no. 3 / Bibliography: leaves 105-120 / 120 leaves, 3 leaves of plates : ill ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (Ph.D.)--University of Adelaide, 1984

Typescript (photocopy) / 146 leaves : ill. ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (Ph.D.) Dept. of Microbiology, University of Adelaide, 1982

Diss. (sammanfattning) Göteborg : Univ., 2008. / Härtill 4 uppsatser.

Thesis (M. Sc.)--University of Canterbury, 2006. / Typescript (photocopy). Includes bibliographical references (leaves 86-101). Also available via the World Wide Web.