Typewritten copy / 246 p. : / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Thesis (M.D.)--University of Adelaide, Dept. of Medicine, 1957

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Reductive dechlorination of chlorinated ethenes is dependent upon suitable substrates promoting microbial activity and creating anaerobic conditions. At the periphery of active reductive dechlorinating zones combinations of lesser chlorinated ethenes should exist along with end products of the anaerobic metabolism that is driving reductive dechlorination. Potential end-products of anaerobic metabolism were investigated for their ability to stimulate oxidative cometabolism of dichloro ethenes (DCEs) by the butane-degrading bacterium, Pseudomonas butanovora. Organic acids that supported butane-monooxygenase (BMO) activity were acetate, propionate, lactate, and butyrate. Lactate consistently supported and sustained greater rates of cooxidation than did the other organic acids. When propane replaced butane as the growth substrate, lactate remained the superior electron donor, while the ability of butyrate and acetate to support BMO activity decreased. In contrast, propionate-supported cooxidation was only observed in propane-grown cells. Lactate supported the degradation of 1,2-trans dichloroethylene (1,2-trans DCE), 1,2-cis dichloroethylene (1,2-cis DCE) and 1,1-dichloroethylene (1,1-DCE) in butane-grown P. butanovora. 78 nmoles (25 μM) of 1,2-cis DCE were completely degraded by butane-grown P. butanovora. In contrast, smaller amounts of 1,1-DCE and 1,2-trans DCE were degraded over the twenty minute time course. Decreasing rates of cooxidation over time were observed for of all three DCEs, and 50% of BMO activity was irreversibly lost after 15 min, 6 min, and 0.5 min exposures to 1,2-cis DCE, 1,2 trans-DCE, and 1,1-DCE respectively. Cell viability decreased by over 90, 95, and 99.95% during the transformation of 25 nmoles/mg protein of 1,2-cis DCE, 1,2-trans DCE and 1,1-DCE. These results indicate that cellular viability was more sensitive to cooxidation of 1,2-cis DCE and 1,2-trans DCE than was BMO. 1,2-cis DCE and 1,2-trans DCE induced BMO activity to 25 and 45% of the butane control, respectively. Induction by 1,2-trans DCE was observed at a threshold of about 20 μM and higher concentrations did not increase BMO activity. Fusion of lacZ to the BMO catabolic promoter, with consequent knock out of BMO activity, provided the opportunity to assess substrate induction without the confounding effects of enzyme inactivation and product induction. While BMO substrates, butane, 1,2-cis DCE, and ethylene, were unable to induce lacZ activity the BMO products, 1-butanol, and ethylene oxide, effectively induced lacZ activity. 1,2-trans DCE was unique among the BMO substrates tested in it's ability to induce expression of lacZ, 2-fold above background, in the reporter strain. A wide range of concentrations induced lacZ activities (10 to 100 μM), and low levels of 1,2-trans DCE achieved high levels of induction after 4 hrs. However, lacZ activities were limited to an induction of about four-fold above background and this limit allowed lower concentrations of 1,2-trans DCE to eventually produce equal levels of beta-galactosidease. These data provide proof-of- concept that BMO-dependent cometabolism can occur independently of butane as an inducer and electron donor for BMO gene expression and activity. / Graduation date: 2004

Retinoic acid (RA) exerts important effects in the processes of vertebrate development, cellular growth and differentiation, and homeostasis. However, the mechanisms of action of RA in the control of cellular and developmental processes are incompletely understood, as the retinoid target genes have not been fully characterized. The goal of these studies described herein was to contribute towards a greater understanding of the cellular effects of retinoids through the identification and characterization of an RA-induced gene from mouse P19 embryonal carcinoma cells. The predicted amino acid sequence of GRASP is characterized by several putative protein-protein interaction motifs, suggesting that GRASP may function in cell signaling pathways. Towards the goal of identifying which signaling pathways GRASP may participate in, a yeast two-hybrid screen was performed using GRASP as a bait to identify protein interaction partners. The general receptor for phosphinositides 1 (GRP1), a guanine nucleotide exchange factor for the ADP-ribosylation factor 6 (ARF6) GTPase, was identified as a GRASP interaction partner. GRASP was shown to colocalize with endogenous ARFs in cells and enhance GRP1 association with the plasma membrane, suggesting that GRASP may function as a scaffold protein in the recruitment of GRP1 and ARF6 to plasma membrane loci. Overexpression of GRASP was observed to induce accumulation of GRASP in the endosomal compartment where GTP-binding deficient mutants of ARF6 reside, suggesting that GRASP induced a block in an ARF6 plasma membrane recycling pathway. Coexpression of GRP1, but not a catalytically inactive mutant, dramatically reduced the accumulation of GRASP in this compartment. Furthermore, GRP1 mutants that lack the region of interaction with GRASP failed to prevent accumulation of GRASP in the endosomal compartment, suggesting that GRASP recruits GRP1 to the endosomal compartment where GRP1 stimulates nucleotide exchange on ARF6 and recycling. Results described herein demonstrate that GRASP functions in the ARF6 regulated plasma membrane recycling pathway, and that upon overexpression, induces a block in recycling. Our results suggest a role for GRASP as an adapter or scaffold protein that may link cell surface receptors to the ARF6 recycling pathway, resulting in modulation of signal transduction events at the cell surface. / Graduation date: 2002

The first committed step in DNA biosynthesis occurs by direct reduction of ribonucleotides. This reduction is catalyzed by ribonucleotide reductase (RNR), an enzyme which uses a unique radical mechanism to facilitate the transformation. All four DNA precursors are synthesized by a single enzyme. Therefore, an intricate pattern of regulation has evolved to insure that RNR generates the proper quantity of each deoxyribonucleotide. It is this regulation, and conditions that influence this regulation, that are the central focal points of this dissertation. The studies described in this thesis have been aided by the development of a novel RNR assay. Unlike the traditional assay, this new procedure permits the simultaneous monitoring of all four RNR activities. This four-substrate assay was used to investigate whether the four enzyme activities of RNR were differentially sensitive to inhibition by the radical scavenger, hydroxyurea. The assay results, along with the results of a technique that measured enzyme inhibition as a function of radical decay, suggest that all activities of RNR are equally inhibited by hydroxyurea. Instead of differential inhibition, it appears that the activity level of RNR determines the relative sensitivity to hydroxyurea. The effects of nucleotide effectors and substrates on the relative turnover rates of the vaccinia virus and T4 phage RNR were also investigated by use of the four-substrate assay. When physiological concentrations of the allosteric effectors and substrates were added to the reaction mixtures, both enzyme forms produced dNDPs in ratios that approximate the nucleotide composition of their respective genomes. Non-physiological nucleotide concentrations generated significantly different product profiles, indicating that RNR has evolved to function within a defined nucleotide environment. Interestingly, the substrate component of the nucleotide environment proved to be as important as the allosteric effectors in modulating the reaction rates. Although the allosteric effects of nucleoside triphosphates have been known for some time, little attention has been given to the potential role that substrates play in the regulation of RNR. The results from my research suggest that the regulation of RNR in vivo results from a complex interplay between the enzyme and its substrates, products, and allosteric effectors. / Graduation date: 1998

The first goal of this study was to understand the role of calpains in skeletal muscle protein degradation in cultured cells. We have developed a genetic approach to inhibit endogenous calpain activity through over-expressing dominant negative m-calpain (DN), antisense m-calpain (AS) and calpastatin inhibitory domain (CID). We observed that, under conditions of accelerated degradation (serum withdrawal), inhibition of m-calpain through DN-m-calpain over-expression caused a 30% inhibition of total protein degradation whereas CID over-expression reduced degradation by 63%. These constructs did not significantly affect degradation in the presence of serum. These data indicate that calpains participate in the accelerated degradation associated with serum withdrawal. Inhibition of calpain also stabilized nebulin, a major structural protein of the sarcomere. These observations indicate that calpains play significant roles in muscle protein turnover. Finally, over-expression of antisense m-calpain caused a transient reduction in m-calpain concentration after which normal m-calpain concentration was quickly re-established. These observations indicate that m-calpain is a short half-life protein in muscle cells. The second goal of this study is to investigate the role of calpain in the mediation of PARP protein level in differentiating myoblasts. Poly(ADP-ribosyl)ation, catalyzed by PARP, is involved in various physiological events, such as DNA excision repair, DNA recombination, DNA replication, cell differentiation, cell growth and transformation, and apoptosis. A protease participating in PARP turnover could be a significant regulator to the events which PARP is involved. A relationship between apoptosis and myofibrillar protein degradation via a common protease might suggest the basis for muscle wasting and atrophy which characterize in many muscle diseases. We established a genetic approach to inhibit endogenous calpain activity through over-expressing calpastatin inhibitory domain (CID). We observed that (1) inhibition of calpain activity increased PARP concentration when post-confluent myoblasts were cultured with 2% HS medium, an inducer of differentiation and (2) inhibition of calpain activity prevented PARP degradation induced by A23187 and etoposide in differentiating myoblasts. These data demonstrate that calpain is involved in regulation of PARP in cultured cells. / Graduation date: 1998

Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2006. / Includes bibliographical references (leaves 228-239). Also available in electronic version.

Thesis (M.A.)--University of Missouri-Columbia, 2006. / The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Title from title screen of research.pdf file viewed on (February 6, 2007) Vita. Includes bibliographical references.