The Newmarket Till is a regional aquitard in southern Ontario that overlies the Illinoian to Middle Wisconsinan Lower Sediments and is overlain by the Oak Ridges Moraine (ORM). Geological investigations have mapped the distribution of the till and it is understood that erosional channels, subsequently infilled with fluvial material, breach the till and may create enhanced hydraulic connection between overlying and underlying aquifers. However, little is known about the protective capability of the Newmarket Till where it is intact. This study used natural tracers to assess the extent of transport in the aquitard-aquifer system. Stable isotopes of water (δ18O and δ2H) showed a depletion trend versus depth. In the Newmarket Till most of the samples had isotope ratios similar to meteoric water data from the nearest location (Egbert, ON). The depleted values of δ18O in the Thorncliffe Formation suggest a remnant signature of early-Holocene precipitation (-16‰ at the depth of 60 m). Elevated levels of NO3- and Cl- were detected near the surface and because of the low permeability aquitard (Newmarket Till), they could not migrate to depth. Total extractable ammonium concentrations are ranging from 4.09 ppm from near the surface to 60 ppm in the lowest part of the Newmarket and then gradually increase to 514 ppm in the bottom of the Thorncliffe Formation. The combination of high NH4+ values and organic carbon content in the Thorncliffe Formation suggests a natural source from mineralization of organic N. The fractionation which happened between δ15Nsediment and δ15N-NH4 may have three explanations: (1) lighter isotopes diffuse faster than heavier ones, so the higher rate of diffusion can cause fractionation; (2) heavier isotopes partition to exchange sites, causing fractionation along the transport pathway; (3) dissociation of NH4+ to NH3 under anaerobic condition. Positive values for δ13C in groundwater in the Thorncliffe Formation are likely due to i) a contribution of carbonate mineral dissolution, and ii) methanogenesis - the Archea favor the lighter isotope of C (12C). Methanogenesis, therefore, enriches the δ13C-DIC was enriched; however, the δ13C in dissolved organic carbon (DOC) is depleted. These geochemical characteristics demonstrate a long residence time for the porewater in the system and indicate that the Newmarket till inhibits recharge of recent precipitation, thereby providing protection to the underlying aquifers from surface-derived contaminants.