Fish assemblages from 54 oxbow lakes in the Mississippi Alluvial Valley were sampled to identify relationships among environmental variables and fish biodiversity in floodplain lake ecosystems. Environmental variables deterministic over fish biodiversity showed a hierarchical organization and were classified as primary or secondary depending on if one variable was considered to govern another. Primary variables included depth, surface area, surrounding land use, and degree of lake-river interconnectedness. Secondary variables included suites of water quality and primary productivity variables. Maximum depth and percentage of agricultural land surrounding lakes showed strongest relationships with other ecosystem components, significantly influencing water quality, primary productivity, and fish biodiversity. I found contrasting results regarding effect of lake-river interconnectedness on fish biodiversity, but maintain that connectivity is nonetheless an important floodplain lake ecosystem component and suggest that floodplain lake management efforts focus on depth, percentage of agricultural land, and restoration of connectivity.

The Mississippi Alluvial Valley (MAV) contained vast bottomland hardwood forests into the 20th century. Humans cleared forests, and altered hydrology, yet the MAV remains important for North American waterfowl and other wildlife. To estimate standing crops of aquatic invertebrates as food in hardwood bottomlands for wintering waterfowl, I quantified dry mass of invertebrates in naturally flooded forests (NFFs) and greentree reservoirs (GTRs) during winters 2008–2010. The MAV had greater invertebrate mass in NFFs (x̄ = 18.39 kg/ha; SE = 2.815 [CV = 15.3%]) than GTRs (x̄ = 5.16; SE = 0.492 [CV = 9.5%]), compared with lesser masses in Mississippi Interior Flatwoods’ GTR (x̄ = 2.26; SE = 0.320) and NFF (x̄= 1.45; SE = 1.305). Invertebrate diversity was greatest in NFFs and in depths from 10–40 cm. Flooding GTRs ≤ 40 cm and managing naturally dynamic hydrology may benefit invertebrates, ducks, and associated bottomland hardwood communities

Winter fallow corn (Zea mays L.) and soybean [Glycine max (L.) Merr.] production systems are susceptible to erosion and agrochemical transport. This research determined the effects of Cover Crop Minimum Tillage (CCMT) on erosion and agrochemical transport from corn-soybean rotations at field scale, while assessing impacts to agroeconomics and irrigation in Mississippi’s Delta Region. CCMT did not affect total suspended solids (p = 0.53), total inorganic phosphorus (TIP) (p = 0.30), or total nitrogen (TN) (p = 0.25) loads, but did reduce TIP (p = 0.018), TN (p = 0.011), and nitrate-nitrite (p = 0.007) concentrations. An economic loss of $281/ha with no effect on yield (p = 0.09), irrigation use efficiency (p = 0.38), or consumptive water use (p = 0.83) was observed. CCMT will not improve profitability of corn-soybean rotations in the Delta and transitioning from fallowing to CCMT will have varying effects on erosion and agrochemical transport.

Waste rice in harvested fields and natural seeds in moist-soil wetlands are important foods for waterfowl in the Mississippi Alluvial Valley (MAV). Waste rice declines significantly between harvest and late autumn. I conducted experiments in 19 rice fields in Arkansas and Mississippi during autumns 2003 and 2004 to evaluate the ability of common post-harvest practices to conserve waste rice between harvest and late autumn. Greatest mean abundance of waste rice in late autumn occurred in standing stubble (x&95 = 105 kg/ha; CL = 72.84, 150.16 kg/ha) followed by burned (x&95 = 72 kg/ha; 49.57, 105.81 kg/ha), mowed (x&95 = 67 kg/ha; 46.65, 97.42 kg/ha), rolled (x&95 = 51 kg/ha; 35.54, 73.076 kg/ha), and disked stubble (x&95 = 48 kg/ha; 33.26, 68.41 kg/ha). I recommend leaving stubble or burning fields to create interspersion of stubble and water after flooding. Additionally, I estimated abundance of moist-soil seed in 72 management units on public lands throughout the MAV for autumns 2002-2004. Mean seed abundance was 496 kg/ha (SE = 62). I recommend increased active management of moist-soil wetlands to mitigate decreased availability of waste rice in the MAV.

Mammalian herbivory of bottomland hardwood seedlings has been listed as one of the primary causal factors of failed afforestation efforts in the Lower Mississippi Alluvial Valley (LMAV). This study examined the biological and economic effects of mammalian herbivory on recently afforested carbon sequestration sites in the LMAV. Selected seedlings of six planting mixes were observed through the first year following planting to monitor seedling survival, growth, and mammalian herbivory. It was determined that greater than 10% of selected seedlings were browsed by various mammalian herbivore species, and some species mixes were browsed in excess of 50%. Financial analyses compared alternative afforestation strategies and determined to what extent herbivore-induced seedling mortality could reduce investment returns of landowners engaged in afforestation activities. In the presence of extreme mammalian herbivory, landowner returns can be reduced by hundreds of dollars per acre and could prevent further afforestation activities in the LMAV.

The USDA Natural Resources Conservation Service (NRCS) implemented the Migratory Bird Habitat Initiative (MBHI) in summer 2010 to provide wetlands for waterbirds inland from the Deepwater Horizon Oil Spill. To evaluate MBHI and associated wetland management practices, I estimated seed and waterbird densities in MBHI and non-managed wetlands in the Mississippi Alluvial Valley (MAV) of Mississippi and Louisiana. Although not statistically different, wetlands enrolled in MBHI contained 1.26 and 1.53 times more seed biomass and seeds consumed by waterfowl than non-managed wetlands, respectively. I also detected 3 times more dabbling ducks and all ducks combined on MBHI wetlands. When I combined density data for all waterbird species, MBHI wetlands contained more than 2 times as many birds than control wetlands. Management via MBHI increased waterbird and potential food abundances, suggesting NRCS consider sustaining MBHI and provide financial incentives to landowners for management of wetlands in the MAV and United States.

The Mississippi Alluvial Valley (MAV) was dominated by extensive lowland forests, but during the 20th century most of the MAV was converted to agricultural, aquaculture, and other human uses. These land-use changes created stopover migration and wintering habitats for waterfowl, shorebirds and other waterbird species. Before landscape modification of the MAV, shorebirds likely migrated past the MAV to wetlands along the northern Gulf of Mexico (NGoM). In 2010, the Deepwater Horizon oil spill impacted coastal marshes of the NGoM. The USDA Natural Resources Conservation Service implemented the Migratory Bird Habitat Initiative (MBHI) to provide waterbirds with wetlands inland of oil-impacted areas. My objectives were to 1) statistically model the waterbird community on wetlands in the MAV and NGoM, 2) estimate relative abundance of shorebird and other waterbirds in idled aquaculture ponds enrolled in MBHI and associated wetlands in the MAV and NGoM, and 3) collect shorebird feathers and blood for stable isotope analysis (13C/12C, 15N/14N) to assess foraging niches and potential migratory connectivity between MAV and NGoM habitats during 2012 – 2013. Consequently, autumns of these years were under a drought, extensively wet from Hurricane Isaac, and exhibited average precipitation in the post-hurricane recovery period which may have had an effect on waterbird assemblages differing by year, month, twice-monthly survey period, latitude, region, state, site, and water depth index. Latitude shifted north and water depth was narrowest when abundant wet habitat existed on the landscape in 2012. Bird abundances were greatest in 2011 and never recovered to these levels in 2012 or 2013, which may have reflected effects of drought concentrating birds on remaining wetlands in 2011 and subsequent to the hurricane. Stable isotope analysis of blood indicated spatial segregation of shorebird species. Neither blood nor feather carbon and nitrogen values revealed definitive linkage of sites between the MAV and NGoM. Shallow water habitat inland may be a limiting resource during migration for waterbirds, especially in drought years when other wetlands may have been limited. Thus, provision of wetlands (mudflat – 15 cm) by MBHI and other conservation strategies across the landscape may allow waterbirds access to needed resources during migration.

Interest in, and rates of, wetland restoration have increased over the past several decades. However, despite proliferations of restored wetlands across the landscape, the structural and functional restoration success of these systems is unclear. Thus, understanding factors and processes that influence wetland characteristics is of considerable interest. This study focuses on herbaceous wetlands in the Mississippi River Alluvial Valley (MAV), a largely agricultural region interspersed with restored and naturally occurring wetlands. Chapter I is an introduction and provides a background to wetlands, wetland ecology, and the current state of wetland restoration in the United States. Chapter II focuses on factors which affect seedling density and similarities between standing vegetation, germinated seedlings, and early successional stage assemblages. Seedling density was heavily influenced by hydrology while richness and diversity were similar between restored and non-managed wetlands. Landscape-level factors affected seedling density, while germinated seedlings did not reflect standing vegetation in MAV wetlands. In Chapter III, I examine the impact of agricultural stressors on wetland plant assemblage development. Resulting assemblages showed strong fidelity to wetland soil site of origin while richness and diversity were negatively affected by elevated stressor levels. In Chapter IV, I compare characteristics between non-managed and restored wetlands in the MAV. These wetlands differed hydrologically, had different levels of soil organic matter, were dissimilar in plant assemblage composition, and varied by surrounding land use/cover. Finally, Chapter V is a discussion of the results and places this work within a larger context.

No evaluations of plant and wildlife communities in Wetlands Reserve Program wetlands have been conducted in the Mississippi Alluvial Valley. Therefore, I evaluated active and passive moist-soil management (MTYPE) and early and late draw-down on plant communities, waterbird use, and water quality on 18 WRP lands, Mississippi, 2007-2009. Active-early sites had greater waterfowl Vegetative Forage Quality (VFQI), percentage occurrence of grass, plant diversity, and structural composition than passively managed sites (P < 0.10). I modeled variation in densities of wintering waterbirds; the best model included VFQI*MTYPE and decreased % woody vegetation (wi ≥ 0.79). Additionally, waterbird densities varied positively with active-late management (R2 ≤ 0.27), as did duck species richness with flooded area (R2 = 0.66). I compared water quality parameters among managed wetlands and drainage ditches but did not detect differences due to variability. Therefore, wetland restoration on WRP lands should focus on active management and maximizing wetland area.

Oxbow lakes are highly productive waterbodies that host multiple life stages of many freshwater aquatic species. Oxbow lakes also provide habitat to Silver Carp (Hypophthalmichthys molitrix), which has enabled populations to grow and expand within the United States. Silver Carp are undesirable because they can compete for resources with native fishes. My goal was to identify patterns of distribution and dispersion of Silver Carp in Moon Lake, Mississippi, to assist and inform precise harvesting of fish. I implanted thirty-five adult Silver Carp with acoustic tags that I released into Moon Lake. I observed that Silver Carp were disproportionately found in locations where water depths ranged from 2.0-5.9 m during all seasons, despite the availability of locations with shallower and deeper water. Silver Carp did aggregate in the wintertime (December-February) in comparison to all other seasons. This information about depth distributions and seasonal aggregations can inform removal programs.