Thesis--University of Chicago. / Bibliography: p. 195-200.

The discharge of sediment-laden rivers into the Mississippi Sound increases the turbidity of coastal waters. The concentration of suspended particulates is an important parameter in the analysis of coastal water quality factors. The spatiotemporal resolution associated with satellite sensors makes remote sensing an ideal tool to monitor suspended particulate concentrations. Accordingly, the presented research evaluated the validity of published algorithms that relate remote sensing reflectance (Rrs) with suspended particulate matter for the Mississippi Sound. Additionally, regression analysis was used to correlate in situ SPM concentrations with coincident observations of visible and near-infrared band reflectance collected by the MODIS Aqua sensor in order to develop a predictive model for SPM. The most robust algorithm yielded an RMSE of 15.53% (n = 86) in the determination of SPM concentrations. The application of this algorithm allows for the rapid assessment of water quality issues related to elevated SPM concentrations in the Mississippi Sound.

Submarine Groundwater Discharge (SGD) through seafloor sediments is gaining recognition as an important component of coastal water quality. Stratigraphic features creating geologic heterogeneity, such as incised paleochannels, may influence preferential pathways for SGD. The central Mississippi Sound is underlain by paleochannels that were incised into Pleistocene sediments while the area was subaerially exposed during the last glacial maximum and are now buried by transgressive Holocene deposits. In this thesis, newly collected chirp, previously published seismic reflection, and sediment core data are used to characterize the three-dimensional structure of the Holocene-Pleistocene contact. Results indicate that Pleistocene paleochannels cross-cut the study area, exhibiting depths from 7.3–23.4 m, widths from 0.2–2.5 km, infilling with higher acoustic impedance fluvial sediments, and burial by transgressive Holocene sediments. Results suggest that this shallow subsurface stratigraphy may mediate locations of SGD and aid in predicting SGD pathways and associated contaminant loading into the coastal ocean.

The Western Mississippi Sound (WMS) is home to the largest natural oyster reef in the Gulf of Mexico and contributes substantially to Mississippi's economy. In 2019, the WMS experienced an unprecedented cyanobacterial bloom that killed fish and birds and led to shut down of beaches and oyster fishery. This thesis aims to quantify cyanobacteria from uncrewed aircraft systems (UAS) imagery and investigate the relative influence of river discharge into the WMS on cyanobacterial concentrations. Several field campaigns were undertaken to collect field data and UAS imagery from WMS. A remote sensing algorithm was developed to quantify the unique cyanobacterial pigment phycocyanin and generate temporal maps for cyanobacteria using UAS imagery. Correlations between the cyanobacteria maps and discharge of major freshwater sources to WMS revealed that Bonnet Carré Spillway had the largest contribution followed by discharge of Jourdan, Wolf, and Pearl rivers to the cyanobacterial concentrations over the oyster reef.

Nearly half of the population of the United States lives in coastal regions, and millions of visitors from across the nation and world enjoy the coasts every year. Coastal and marine areas provide for recreation, economic activities essential for the financial health of the nation, and vital ecological services. As they provide so many benefits to the U.S., it is vital to protect and preserve the coastal and ocean areas from the increasing, competing demands they are facing. In order to protect and preserve these complex systems, a comprehensive approach incorporating science, engineering, humanities, and social sciences should be taken; this approach is commonly referred to as Ecosystem-Based Management. This dissertation focuses on developing a framework that can be used to identify appropriate sub-regions in Northern Gulf of Mexico coastal and marine environments for the purposes of Ecosystem-Based Management. Through this work, the roles of three management protocols used for managing coastal areas – coastal and marine spatial planning, ecosystem-based management, and integrated ecosystem assessment – were examined individually as well as their integrations with each other. Biological, ecological, physical, human, and economic indicators for partitioning an ecosystem were developed and weighted for each management protocol using the analytic hierarchy process and expert elicitation. Using the weighted indicators, a framework for identifying sub-regions and estuarine classification system was developed. The framework and classification system were applied to five estuaries within the Northern Gulf of Mexico: Barataria, Galveston, Mobile, and Perdido Bays and Mississippi Sound. Initial results from this work show that: 1. Sub-regions can be identified as associated to each other based upon indicator data values and not upon physical location. 2. Even though the weights calculated for the management protocols vary significantly, for systems that were not highly homogeneous in indicator data values, the different weights did not produce the vastly different cluster maps expected. 3. The scale work indicates that to identify appropriate sub-regions using the developed framework, a larger grid size produces more consistent results for larger systems whereas a smaller grid size produces more consistent results for smaller systems. Recommendations for further research are also presented.