Diss. (sammanfattning) Stockholm : Karol. inst., 2002. / Härtill 5 uppsatser.

Diss. (sammanfattning) Stockholm : Karol. inst., 2004. / Härtill 4 uppsatser.

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Ph.D.

Diss. (sammanfattning) Stockholm : Karol. inst., 2004. / Härtill 5 uppsatser.

The majority of pharmaceutical products are formulated as solids in the crystalline state. With the potential to exist in different crystalline modifications or polymorphs, each solid form bears its own physical and chemical properties, influencing directly bioavailability and manufacturability of the final dosage form. In view of the importance of crystalline form selection in the drug development process, it is imperative for pharmaceutical scientists to work arduously on various aspects of polymorphism, ranging from fundamental understanding of the phenomenon at the molecular level to practical utilization of a specific crystalline form. One common feature of organic crystals is the existence of distinct molecular conformations in different polymorphic structures, known as conformational polymorphism. Conformational polymorphs are routinely observed in drug development, produced when crystal growth conditions vary. Crystallization from solution involves nucleation and crystal growth, the mechanisms that influence the polymorphic outcome. The embryonic solute aggregate has been recognized to play a critical role in dictating the final crystal structure, and solution conditions are also known to drastically influence the self-association behavior of solute molecules during crystallization, affecting crystal packing of organic molecules. For the crystal growth of conformational polymorphs, changes in molecular conformation not only determine the growth kinetics, but also influence the nature and strength of interactions present in the crystal structures. How conformation and intermolecular interaction affect each other underlines the intricacy and the wonder of crystal growth of the organic. Thus, the overall goal of this research is to provide the fundamental understanding of the extent to which solution conditions influence the molecular conformation in the solid-state of a model drug, tolfenamic acid. By combining experimental studies with advanced computational tools, this dissertation offers novel insights into solution species during pre-nucleation and molecular packing of conformational polymorphs of tolfenamic acid. In-depth understanding of the underlying connection between molecular conformation and crystal packing will help advance the knowledge required for rational control of crystal growth.

Diss. (sammanfattning) Uppsala : Univ., 2002. / Härtill 4 uppsatser.

Thesis (Ph. D.)--University of Washington, 1998. / Vita. Includes bibliographical references (leaves [114]-128).

The investigation and control of molecular properties is currently a dynamic research field. Here I present molecular level studies of porphyrin molecules adsorbed on metal surfaces via Low Temperature Scanning Tunneling Microscopy/Spectroscopy (STM/STS), supported by complementary X-ray absorption experiments. Intermolecular and molecule-surface interactions of tetrapyrdil porphyrin (TPyP) on Ag(111) and Cu(111) were investigated. TPyP self-assembles on Ag(111) over a wide sample temperature range into large, highly-ordered 2D chiral domains. By contrast, adsorption of TPyP on the more reactive Cu(111) leads to temperature dependent assemblies, governed decisively by the strong substrate influence. The increased metal-surface interactions on Cu(111) are accompanied by a conformational distortion of the porphyrin macrocycle. The TPyP’s pyridil groups were coordinated with single iron molecules, forming metal-organic complexes. Furthermore, the porphyrin’s macrocycle was metalated by exposing a layer of well-ordered TPyP to an iron atom beam, demonstrating a novel approach towards the fabrication of metallo-tetraaryl porphyrins performed in two dimensions under ultrahigh vacuum conditions. This method was similarly used to form lanthanideporphyrinates by coordinating tetraphenyl porphyrin (TPP) macrocycles with cerium. The influence of the metal center on the porphyrins’ electronic structure was investigated via STS for TPP, TPyP,Fe−TPyP, Fe−TPP, Ce−TPP, and Co−TPP, whereby the inhomogenous electron density distribution associated with individual frontier orbitals were imaged via dI/dV mapping. The symmetry and form of the molecular orbitals could be directly correlated to the saddle-shaped conformational adaptation for the case of Co −TPP.

The main result of this thesis is the development of a theory of semidefinite facial reduction for the Euclidean distance matrix completion problem. Our key result shows a close connection between cliques in the graph of the partial Euclidean distance matrix and faces of the semidefinite cone containing the feasible set of the semidefinite relaxation. We show how using semidefinite facial reduction allows us to dramatically reduce the number of variables and constraints required to represent the semidefinite feasible set. We have used this theory to develop a highly efficient algorithm capable of solving many very large Euclidean distance matrix completion problems exactly, without the need for a semidefinite optimization solver. For problems with a low level of noise, our SNLSDPclique algorithm outperforms existing algorithms in terms of both CPU time and accuracy. Using only a laptop, problems of size up to 40,000 nodes can be solved in under a minute and problems with 100,000 nodes require only a few minutes to solve.