Diseases of heart muscle, such as hypertrophic and dilated cardiomyopathy, are often caused by mutations in proteins of the sarcomere, including actin, troponin, tropomyosin, and myosin. The molecular mechanisms of disease-causing mutations remain unclear because the process of cardiac muscle contraction and the corresponding mutational insults are incompletely defined. To elucidate the underlying mechanisms of cardiac muscle contraction, its regulation, and the effects of disease-causing mutations, the structures of sarcomeric protein assemblies must first be solved. In this dissertation we use interdisciplinary structural biology techniques, including cryo-electron microscopy (cryo-EM), protein-protein docking, and molecular dynamics simulations to investigate the interactions between actin, tropomyosin, and myosin. This structural work is foundational in identifying the molecular effects of mutations. In the first project, we present a novel cryo-EM structure of the cardiac-isoform actomyosin-tropomyosin complex. This structure, which utilizes bovine masseter β-myosin, provides the foundation for understanding the molecular effects of cardiomyopathy-causing mutations that occur at the actomyosin interface. Furthermore, by pairing our structure with protein-protein docking methods and molecular dynamics simulations, we identify complementary and periodic electrostatic interactions between the myosin surface loop 4 and tropomyosin. We hypothesize that these interactions are essential in switching between contraction- and relaxation-mediating states. In a follow up study, we test our myosin loop 4 hypotheses by creating a human cardiac β-myosin all-glycine loop 4 mutant, which abolishes nearly all electrostatic interactions between myosin and tropomyosin. After designing the mutant, we solve the cryo-EM structures of the wild-type and mutant actin-myosin-tropomyosin complexes to high resolution. Our structures confirm that the loop 4 mutant abolishes its interaction with tropomyosin and suggests that the tropomyosin cable on mutant actomyosin filaments is shifted to a new position. Subsequent molecular dynamics simulations corroborate our cryo-EM finding that tropomyosin on mutant actomyosin is displaced from the wild type position. Interaction energy calculations derived from these simulations suggest that the mutant position is significantly less stable than the wild-type. This work provides further evidence that loop 4 interactions are key in stabilizing tropomyosin position during contraction. Finally, to extend our work on the human cardiac actomyosin-tropomyosin complex, we provide insights into the ADP release step of the cardiac β-myosin kinetic cycle. Here, we use a composite method of helical and single-particle cryo-EM reconstruction techniques to solve the structures of the human cardiac actin-myosin-tropomyosin filament in the presence and absence of ADP-Mg2+. This work elucidates the structural basis of cardiac β-myosin ADP release and provides insight into the force-sensing mechanism of the cardiac motor. Lastly, we use our structures to probe how cardiomyopathy-causing mutations potentially disrupt the ADP-to-rigor transition, leading to altered myosin contractility. Overall, the structures solved in this dissertation generate fundamental understanding about the function of the cardiac thin filament and the motor protein, myosin. Moreover, this research provides a framework that connects the initial molecular insults of mutations to the disruption of proper regulation that leads to pathological progression. / 2023-08-24T00:00:00Z

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Numerous references have suggested that alterations in exercise capacity during congestive heart failure (CHF) are not simply due to changes in myocardial function. In fact, recent evidence has indicated that reductions in skeletal muscle strength and endurance during CHF significantly impact exercise capacity of the CHF patient. Currently, it is believed that alterations in skeletal muscle phenotype, or more specifically a slow to fast transformation in phenotypic protein isoforms contribute to the reductions in muscle function. However, currently there are few data which directly document this slow to fast transformation of the skeletal muscle. Interestingly, it is well established that exercise training can cause changes in skeletal muscle phenotype, more specifically in the fast to slow direction. This is in direct contrast to what is known to occur during CHF. However, it is unclear if similar adaptations will result from training in a CHF patient. Also, it is not clear if the adaptations are due to alterations in the myocardium or changes directly imposed upon the muscle by the exercise training. Therefore, the purpose of this study was two-fold: 1) to clarify the changes in skeletal muscle myosin heavy chain (MHC) during CHF and 2) to determine if skeletal muscle can adapt to increased activity levels, utilizing functional overload (FO) without significantly improving cardiac function. In the first study the mixed plantaris muscles from rats afflicted with severe CHF demonstrated a significant (p<0.05) increase in fast MHC (e.g. IIb expression at the expense of IIx expression) compared to the control animal (SHAM). The mixed red gastrocnemius, regardless of the severity of CHF, exhibited significant (p<0.05) changes in all of the MHC isoforms. The slow soleus and fast white gastrocnemius did not display any significant changes in MHC expression. The changes in MHC isoform significantly correlated with indicators of disease severity, suggesting there may be an existing relationship between skeletal muscle MHC expression and alterations in myocardial function. In the second study, there were no differences exhibited between CHF and SHAM absolute or specific plantaris mass. There was a significant (p<0.05) 30% increase in both absolute and specific mass of the plantaris in the CHF-FO and SHAM-FO groups compared to the CHF and SHAM groups. There was a significant (p<0.05) 3.5% increase in slow MHC I expression and a significant (p<0.05) 6.5% decrease in fast MHC IIb expression in the CHF-FO group compared to the CHF group. In the SHAM-FO group, there was a significant (p<0.05) 4% increase in MHC I expression and a subsequent 8% decrease in fast MHC IIx+IIb in the SHAM-FO compared to the SHAM groups. There were no differences detected in the rates of Ca²⁺ uptake between the CHF-FO, SHAM, and SHAM-FO. However, Ca²⁺ uptake rates were significantly (p<0.05) elevated by 44% in the CHF group when compared to the other three groups. There were very few changes in plantaris SERCA 1 or 2 protein expression between the four groups. These data suggest that during CHF there are alterations in skeletal muscle isoform expression. However, at least some of the data suggest that changes in function are not always associated with changes in phenotype. Instead, it seems that the changes in Ca²⁺ handling may be due to an alteration in a regulatory mechanism. Also, the data indicate that skeletal muscle is adaptable to increases in activity levels without significantly altering myocardial morphology. / Ph. D.

Extraction and quantitation of myosin light chain two coupled with myograph recordings from Ascaris muscle perfused with calmodulin inhibitors and neurotransmitters in conjunction with their respective agonists and antagonists have been used to establish the regulation of contraction in this muscle. Densitometric tracings of isolectric focusing gels separating the regulatory light chain were used to quantitate phosphorylation in resting, contracted and flaccid muscle. These studies indicated that inhibitory neurostimulation is mediated by a true GABA receptor. Myosin-mediated contraction is responsible for maintaining the level of tension observed in resting actin-mediated muscle. Actin-mediated contraction is responsible for the rapid rise in tension following excitatory stimuli. Both systems function simultaneously and are independant.

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In many systems of interest, both physical and biological, disorder inhibits the organization and cooperative properties of the system. Disorder can originate from a variety of system defects and the degree of disorder also varies. Geometric frustration introduces disorder into a system in which all the preferred interactions between the elements of the system cannot be satisfied due to the topology of an underlying lattice that describes the position of these elements. Recently, geometric frustration has been recognized as an important organizing principle in a diverse range of systems from superconducting networks to neural computation. The correlation behavior of such systems is often complicated and poorly understood. The myosin lattice of higher vertebrate muscle is a geometrically frustrated system, and the presence of this kind of disorder has prevented a rigorous interpretation of X-ray diffraction patterns from muscle fibres for the purposes of studying muscle molecular structure. This thesis investigates the correlation behavior of two geometrically frustrated systems, the triangular Ising antiferromagnet (TIA) and the fully frustrated square Ising model (FFS), and its use to interpret X-ray fibre diffraction patterns. A combination of numerical evaluation of exact expressions and Monte Carlo simulation is used to study a number of aspects of the two-point correlation function of the TIA and FFS. In the case of the TIA, a simple functional expression is developed that allows accurate calculation of the correlation function. Theory is developed for calculating diffraction by polycrystalline fibres of helical molecules, in which the constituent crystallites contain correlated substitution disorder. The theory was used to study the characteristics of diffraction by fibres with TIA-type substitution disorder statistics. A quantitative model of the disorder in the myosin filament array is developed and the above theory is used to calculate X-ray fibre diffraction from low resolution models of the myosin filament array in higher vertebrate muscle. The calculated diffraction is compared to measured diffraction data, showing good agreement.

Radial chromosome positioning in interphase nuclei is non-random and can alter according to developmental, differentiation, proliferation or disease status. The aim of this thesis is to understand how chromosome re-positioning is elicited and to identify the nuclear structures that assist this re-localisation event. By positioning all human chromosomes in primary fibroblasts that have left the proliferative cell cycle, the study within this thesis has demonstrated that in cells made quiescent by reversible growth arrest, chromosome positioning is altered considerably. Upon removal of serum from the culture medium, chromosome re-positioning took less than 15 minutes, required energy and was inhibited by drugs affecting the polymerization of myosin and actin. The nuclear distribution of nuclear myosin 1β was dramatically different in quiescent cells as compared to proliferating cells. If the expression of nuclear myosin 1β was suppressed using interference RNA procedures the movement of chromosomes after 15 minutes in low serum was inhibited. When high serum was restored to the serum starved cultures chromosome repositioning was only evident after 24-36 hours that coincided with a return to a proliferating distribution of nuclear myosin 1β.