Water availability, supply, accessibility, and quality issues are becoming urgent issues around the globe. Planning and management of water resources is both complicated and different in every state for every type of water resource. Estuaries are among the most important ecosystems in the world, in terms of their ecological and economic value. The many problems facing estuaries across the nation led to an effort by the Environmental Protection Agency (EPA) to protect these valuable resources and to characterize their conditions. The National Estuary Program (NEP) was established in 1987, under an amendment to the Clean Water Act to address estuarine issues and planning. Three NEP case studies, Galveston Bay Estuary Program, San Francisco Bay Estuary Program, and Tampa Bay Estuary Program provide insight into the functions, capacities and potential of the NEP. Estuary Programs can be located in a variety of institutional settings, and these case studies evaluate the institutional structure of the individual estuary program in the context of their state political environments. These programs provide interesting management and planning challenges, as estuaries do not conform to exact political jurisdictions, so NEP’s define their management areas according to watershed boundaries and their ecosystems in an effort to provide comprehensive estuarine planning and management. This professional report will evaluate these three case studies to determine the role of the NEP in regional water planning and estuarine management. / text

Seagrasses are important foundation species in coastal ecosystems. Genetic diversity of seagrasses can influence a number of ecological factors including, but not limited to, disturbance resistance and resilience. Seagrasses in the Indian River Lagoon (IRL), Florida are considered to be highly disturbed due to frequent events, like algal blooms, that impair water quality, reducing available light for seagrass growth. Halodule wrightii is a dominant seagrass throughout the IRL, but its genetic diversity has only been quantified in a few Gulf of Mexico and Florida Bay populations and little is known about its potential ecological consequences. I quantified the genetic variation of H. wrightii using microsatellite markers in the southern IRL to determine: (i) how disturbance history influenced genetic diversity, (ii) if morphology of clones was, in part, genetically controlled and related to disturbance history, and (iii) if genotypes showed phenotypic plasticity in response to disturbances. In the IRL, H. wrightii populations exhibited moderate genetic diversity that varied with disturbance history. The disturbance history of a population was classified by the variance in the percent occurrence of H. wrightii over a 16-year period. Genotypic richness and clonal diversity of H. wrightii increased with increasing disturbance histories. Other genetic diversity measures (e.g., allelic richness, observed heterozygosity) did not change with disturbance history. These findings suggest that impacts to seagrass coverage over time can change the genotypic composition of populations. When different genotypes of H. wrightii were grown in a common garden, differences in leaf characteristics among genotypes provided evidence that morphological trait variation is, in part, explained by genetic variance. The disturbance history of genotypes did not directly affect morphological traits. However, significant genotype x site (within disturbance history) interactions found greater variation in shoot density and below ground traits of H. wrightii genotypes from sites of intermediate disturbance history. Traits of H. wrightii were shown to be phenotypically plastic. Significant genotype x environment interactions for shoot density and height demonstrated that genotypes responded differently by increasing, decreasing, and not changing sizes in response to light reduction. Genetic diversity of H. wrightii has strong implications for ecological function in coastal communities. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection