M.Sc. / Please refer to full text to view abstract

M.Sc. / This study embraces three facets, namely a checklist of all the freeliving and plantparasitic nematodes, reported from the Kruger National Park, descriptions of the nematode species found during the present study, and a historical review of the family Aporcelaimidae with emphasis on the genus Aporcelaimellus Heyns, 1965, a species compendium and descriptions of several new species ...

M.Sc. / Refer to full text to view abstract

Thesis (PhD)--Stellenbosch University, 2013. / ENGLISH ABSTRACT: Entomopathogenic nematodes have the potential to be outstanding biocontrol agents against agricultural pest insects. Combined with their bacterial symbionts, these biocontrol agents have proven to be very effective against numerous pests. The nematodes belong to the families Steinernematidae and Heterorhabditidae, and are ideal to be used in, and integrated with, pest management systems. There is a dire need for new and innovative methods to control agricultural pests, as numerous pest insects have developed resistance against broad-spectrum insecticides. Together with the environmental impact of these insecticides and the safety aspect regarding humans and animals, the need to develop new technologies, including entomopathogenic nematodes for pest management, is high. In this study, the associated symbiotic bacteria of three entomopathogenic nematodes species were isolated, and the potential of two nematode species to be successfully mass cultured in liquid medium was evaluated. Regarding the symbiotic bacteria, results from the study showed that bacteria species from all three nematode species, Heterorhabditis noenieputensis, Steinernema khoisanae and Heterorhabditis zealandica, were novel. Heterorhabditis noenieputensis was isolated in the Mpumalanga province during a previous survey conducted in citrus orchards. The bacterium isolated from this nematode belongs to the genus Photorhabdus, and bear closest similarity (98.6%) to the type strain of P. luminescens subsp laumondii (TT01T). Photorhabdus luminescens subsp. noenieputensis subsp. nov., derives its name from the area where the nematode was sourced, namely the farm Springbokvlei, near the settlement Noenieput close to the Namibian border. Thus far, 85 Steinernema spp. have been described worldwide, including S. khoisanae which was isolated in the Western Cape province of South Africa. Four S. khoisanae strains, namely SF87, SF80, SF362 and 106-C, were used for characterisating the new bacteria from different localities in South Africa. Using the neighbor-joining method, all the strains were aligned with 97% homology to the 16S rRNA sequences of several Xenorhabdus- type strains, indicating that they belonged to the same genus. The multigene approach was used to distinguish between the Xenorhabdus spp. and partial recA, dnaN, gltX, gyrB and infB gene sequences of the various strains were analysed. The bacterium species was named Xenorhabdus khoisanae sp. nov. after the nematode from which it was isolated. The results showed that the third bacterium species, which was isolated from H. zealandica, was new. The sequence of the bacteria strain clustered with the type strains of P. temperata and P. asymbiotica, indicate that it belonged to the genus Photorhabdus. This is the first study to show that H. zealandica associates with a luminescent Photorhabdus species, rather than with the known non-luminescent P. temperata. The potential of H. zealandica and Steinernema yirgalemense mass culture in liquid was investigated. Results illustrated that H. zealandica and its P. luminescens symbiont can be successfully cultured in liquid. However, two generations occurred during the process time, instead of the desirable one-generation. The growth curve of the symbiotic bacteria during the process time was measured, in order to determine when the stationary phase was reached, with the results showing this to occur after 36 h. Therefore, the optimum amount of time required for inoculating the IJs and for aiding in maximum infective juvenile (IJ) recovery is 36 h for adding the nematodes post pre-culturing of the bacteria. Future research goals should be to increase the percentage recovery in liquid culture, which would increase the number of nematodes produced per ml, which would, therefore, reduce the processing time significantly. The results from mass culturing the second nematode species, S. yirgalemense, indicated an asynchronous nematode development in the first generation. Growth curves were performed with the symbiotic bacteria that showed the exponential phase of Xenorhabdus started after 15 h, and that, after 42 h, the stationary phase was reached, with an average of 51 × 107 cfu·ml-1. Bioassays were performed to compare the virulence between in vitro- and in vivo-produced nematodes, with the results showing that the in vitro-produced nematodes were significantly less virulent than were the nematodes produced in vivo. The success obtained with the production of S. yirgalemense in liquid culture can serve as the first step in the optimising and upscaling of the commercial production of nematodes in industrial fermenters. The last aim of the current study was to determine when Xenorhabdus reached the stationary phase, when it is grown in a 20-L fermenter, as this would be the optimum time at which to add the IJs of S. yirgalemense. Such characteristics as the effect of stationary phase conditions on the bacterial cell density and on the DO2 rate in the fermenter were investigated. The results showed that the stationary phase of Xenorhabdus was reached after 36 h at 30˚C, which took 6 h less than did the same procedures followed with the Xenorhabdus sp. cultured in Erlenmeyer flasks on orbital shakers. This is the first step toward the liquid mass culturing of S. yirgalemense in industrial-size fermenters. Data from this study indicated the optimum amount of time that is required for adding nematodes to the bacterial culture in the fermenter, and for ensuring the optimum recovery of IJs, as well as a subsequent high yield of nematodes within a minimum processing time. This is the first report of its kind to investigate comprehensively the successful liquid culture of two South African entomopathogenic nematode species for the sole purpose of evaluating potential commercialisation. Results emanating from this study could be used as groundwork in future, in combination with similar research such as culturing nematodes intensively in large fermenters. / AFRIKAANSE OPSOMMING: Entomopatogeniese nematodes het die potensiaal om as doeltreffende biologiese beheeragente teen sleutelplaaginsekte gebruik te word. Elke nematood werk interaktief met ‘n spesifieke bakterium. Entomopatogeniese nematodes, behorende tot die families Steinernematidae en Heterorhabditidae, is ideale kandidate vir gebruik in ‘n geïntegreerde plaagbestuurprogram. Tans is daar ʼn behoefte vir nuwe metodes vir die beheer van plaaginsekte, omdat meeste insekte reeds weerstand opgebou het teen bestaande plaagdoders. As gevolg van die negatiewe impak van plaagdoders op die omgewing, asook kommer oor veiligheid vir die mens en diere, is die ontwikkeling en gebruik van alternatiewe plaagbeheermiddels noodsaaklik. In die eerste deel van die studie word drie nuwe bakterie spesies geïsoleer en beskryf. Resultate van hierdie studie het aangetoon dat die bakterië spesies vanuit die nematode spesies, Heterorhabditis noenieputensis, Steinernema khoisanae, en Heterorhabditis zealandica, tot dusver onbeskryf was. Eersgenoemde, H. noenieputensis, is afkomstig van ʼn sitrusboord in die Mpumalanga Provinsie. Die bakterie hieruit geïsoleer behoort tot die genus Photorhabdus en is biologies verwant (98.6%) aan P. luminescens subsp laumondii (TT01T). Die bakterie is benaam as Photorhabdus luminescens subsp. noenieputensis nov. en is na die nematood waaruit dit geïsoleer is vernoem. Tot dusver is wêreldwyd 82 spesies van Steinernema spp. beskryf, insluitende S. khoisanae van die Weskaap provinsie. Vier bakterie isolate is van S. khoisanae, SF87, SF80, SF362 en 106-C geïsoleer. Die buur-koppeling metode was gebruik om te bepaal dat hierdie bakterie isolate tot 97% ooreenstem met verskeie isolate van Xenorhabdus se 16S rRNA DNS volgordebepalings. Om tussen Xenorhabdus spp. te onderskei is ʼn multi-geen benadering gebruik deur gedeeltelike recA, dnaN, gltX, gyrB en infB DNS basispaar volgordebepalings van die verskeie isolate te bepaal. Hierdie bakterie isolaat is soortgelyk ook vernoem as, Xenorhabdus khoisanae sp. nov., na die nematood waaruit dit geïsoleer is. Die derde onbekende bakteriële spesie is uit H. zealandica geïsoleer. Die DNS basispaar volgordebepaling van die 16S geen van SF41 toon aan dat dit in dieselfde groep as P. temperata en P. asymbiotica val en sodoende aan die genus Photorhabdus behoort. Hierdie is die eerste studie met die bevinding dat H. zealandica ook met ʼn ander bakterie spesie geassosieer kan word buiten die normale P. temperata spesie. Die tweede deel van die studie gaan oor die teling van twee nematood spesies, H. zealandica en Steinernema yirgalemense, en hulle is geëvalueer vir hulle potensiaal om geteel te word in ʼn vloeibare medium. Die resultate het gewys dat H. zealandica met sy P. luminescens simbiont suksesvol in vloeistof aangeteel kan word, ten spyte van die feit dat daar twee generasies ontwikkel het, in plaas van die meer ideale enkel generasie. Die groeikurwe van die simbiotiese bakterie was gemonitor om te bepaal wanneer die stasionêre fase bereik word. Die resultate toon dat hierdie fase na 36 uur bereik was. Dus was die infektiewe nematode larwes eers na 36 uur tot die vloeibare medium waarin die bakterie geteel was bygevoeg. Navorsing in die toekoms moet dus gefokus wees om die persentasie herwinning van die infektiewe larwes te verhoog. Dit sal daartoe lei dat meer nematodes per ml geproduseer kan word en ook die prosesseringstyd van die nematodes verminder. ʼn Tweede nematode spesie, S. yirgalemense, was ook in vloeistof geteel. Hier het ʼn asinkroniese ontwikkeling in die eerste generasie plaasgevind wat problematies is. Groeikurwes is bepaal van die bakteriële simbiont en die resultate het gewys dat die groeifase van Xenorhabdus na 15 uur in aanvang geneem het en dat die stasionêre fase bereik was na 42 uur met ʼn gemiddelde van 51 × 107 selle·ml-1. Die virulensie van nematodes wat in vitro geteel is, is vergelyk met die virulensie van nematodes wat in vivo geteel is en die resultate het getoon dat die in vitro geteelde nematodes minder virulent was. Die teling van S. yirgalemense in vloeistof was oor die algemeen meer suksesvol as die teling van H. zealandica in dieselfde medium. Die doelwit van die laaste gedeelte van hierdie studie was om te bepaal wanneer Xenorhabdus die stasionêre fase bereik wanneer dit in ʼn 20-L fermenter gekweek word. Dit bepaal sodoende die optimale tyd wanneer die infektiewe larwes van S. yirgalemense bygevoeg behoort te word. Die uitwerking van die stasionêre fase op die bakteriële selle, asook die DO2-konsentrasie in die fermenter, was geëvalueer. Resultate het gewys dat die stasionêre fase van Xenorhabdus na 36 uur bereik was, wat 6 uur korter is as toe dit gekweek is in Erlenmeyer flesse. Hierdie studie is die eerste stap om die massa teling van S. yirgalemense in industriële fermenters suksesvol te bemeester. Die data wat verkry was, het aangedui wat die ideale tydsduur sal wees om die bakteriegetalle te vermeerder voordat die nematode bygevoeg word. Hierdie is die eerste studie wat die teling van twee Suid-Afrikaanse nematode spesies omvattend in vloeistof evalueer het. Die hoof doelwit is om die potensiaal van hierdie nematode spesies, met die oog op kommersiële gebruik, te meet. Die resultate van hierdie studie kan gekombineer word met toekomstige studies in hierdie spesifieke navorsingsveld.

M. Tech. Agriculture / This study was conducted to establish whether genetic resistance to root-knot nematode is present in local available Amaranthus-, Spinacea oleracea-, Beta vulgaris-, Daucus carota-, and Capsicum genotypes. Host suitability trials for the relevant vegetable genotypes were conducted in separate greenhouse studies. Different nematode parameters were used to select for root-knot nematode resistance but reproduction factors values (Rf) were used as main criterion.

D.Phil. (Nematology) / This was the first study on aquatic nematodes from the Kruger National Park. Samples were taken more or less randomly over a period of two years from the four main rivers in the park, viz. the Crocodile, Sabie, Olifants and Luvuvhu rivers. A total of 33 species representative of 24 genera were found. Dorylaimida seemed to be dominant in most of the sampling sites in the Sabie, Olifants and Luvuvhu Rivers, but there was no dominant group in the Crocodile River. Five new Dorylaimida species are described: Dorylaimus deaconi spec. nov., Laimydorus olifanti spec. nov., Laimydorus africanus spec. nov.; proleptonchus krugeri spec. nov. and Aporcelaimellus glandus spec. nov. Previously known dorylaim species which were redescribed in detail are Mesodorylaimus sp.cf paralitoralis Basson & Heyns, 1974; M. potus Heyns, 1963, M. aegypticus (Andrassy, 1958), Aquatides thornei (Schneider, 1937), Afractinolaimus zairensis (Baqri, Coomans & Van der Heiden, 1975) and Oxydirus gangeticus Siddiqi, 1966. Further dorylaim species recorded are Aporcelaimellus micropunctatus Botha & Heyns, 1990, Discolaimus monoplanus Heyns, 1963, D. major Thorne, 1939, Xiphinema italiae Meyl, 1953, Thornenema baldum (Thorne, 1939), Tyleptus striatus Heyns, 1963 and Dorylaimellus (Axodorylaimellus) caffrae (Kruger, 1965) . The following Tylenchida species were found: Hemicycliophora labiata Colbran, 1969, Helicotylenchus africanus (Micoletzky, 1916) and Scutellonema brachyurum (Steiner, 1939). Three Araeolaimida species were recorded, viz. Chronogaster africana Heyns & Coomans, 1980, Plectus cirratus Bastian, 1865 and Rhabdolaimus terrestris de Man, 1880. The latter species is redescribed in full collected and (de Man, 1979). Only one species of the Cromadorida viz. Achromadora ruricola 1880), Enoplida viz. Eutobrilus annetteae (Joubert & Heyns, Monhysterida viz. Monhystera somereni Allgen, 1952, were Detailed descriptions are given to incorporate additional morphological information obtained. Brief descriptions and new distribution records are also given for Mononchus truncatus Bastian, 1865, M. aquaticus Coetzee, 1968 and Mylonchulus minor (Cobb, 1893) of the Mononchida and Ironus longicaudatus de Man, 1884 and I. ignavus Bastian, 1865 of the Iro~idae.A diagnostic compendium for the Mesodorylaimus species of South Africa and a checklist of the free-living and plant parasitic nematode species from both terrestrial and aquatic habitats in the park are also included. Most of this work has already been published or submitted for publication in scientific journals and is presented in this thesis in the same format as required by the editors of the journals concerned.

Thesis (PhD)--Stellenbosch University, 2011. / ENGLISH ABSTRACT: Codling moth, Cydia pomonella (L.) (Lepidoptera: Tortricidae) is a devastating pest of pome fruit in temperate regions of the world. Control of this pest, previously involved the extensive use of broad-spectrum insecticides. However, concerns over human safety, environmental impact, widespread dispersal of resistant populations of codling moth and the sustainability of synthetic pesticides in agroecosystems, has encouraged the development and use of alternative environmentally-friendly pest management technologies including the use of entomopathogenic nematodes. These nematodes are lethal pathogens of insects and belong to the families Steinernematidae and Heterorhabditidae, and are ideal candidates for incorporation into the integrated pest management programme currently being developed for residue-free pome fruit production in South Africa. The biological and ecological factors pertaining to the successful use of these nematodes for the control of codling moth were investigated in this study. Their use for bin-disinfestations was evaluated, focusing on the optimum handling conditions to ensure the survival and subsequent efficacy of the nematodes. The study proved that the local isolate SF41 of Heterorhabditis zealandica Poinar 1990 could be used for successful bin-disinfestation. The use of the same nematode isolate was also investigated for the disinfestation of mulch layers of diapausing codling moth larvae. An insect containment device which allowed for direct trial efficacy evaluation was identified and ecological factors pertaining to the successful use of nematodes for mulch disinfestation were investigated. The biological control potential of local nematode isolates, which had previously never been tested against codling moth larvae, was investigated in the laboratory under conditions as can be expected during orchard applications. The efficacy of the selected isolates was confirmed in field experiments. Innovative insect containment methods for above-ground trial efficacy evaluation in the field were investigated. Desiccation proved to be the most limiting factor to the survival and subsequent efficacy of the nematodes during field applications in temperate regions. The effect of low moisture levels on H. zealandica’s efficacy to control diapausing codling moth larvae was subsequently investigated and a starch-based formulation was further tested to overcome the issue of desiccation. Conclusive results indicated that there were several biological and ecological factors influencing the survival of nematodes and illustrated how these factors could be manipulated to overcome these issues and thereby ensure the efficacy of treatments. This is the first report of its kind to comprehensively investigate the use of South African entomopathogenic nematodes for the control of diapausing codling moth larvae and all results emanating from the study can be integrated into a framework for the commercial use of these nematodes in this regard in future. / AFRIKAANSE OPSOMMING: Kodlingmot, Cydia pomonella (L.) is ‘n ernstige sleutelplaag in appel- en peerboorde in gematigde klimaats gebiede wêreldwyd. In die verlede is hoofsaaklik breëspektrum insektedoders gebruik vir die beheer van hierdie plaaginsek. Maar, kommer oor veiligheid vir die mens, impak op die omgewing, verspreiding van weerstandbiedende populasies van kodlingmot en beperkte volhoubaarheid van sintetiese plaagdoders het die ontwikkeling en gebruik van alternatiewe plaagbeheer tegnologieë, insluitend die gebruik van entomopatogeniese nematodes, genoodsaak. Entomopatogeniese nematodese horende tot die families Steinernematidae en Heterorhabditidae, is ideale kandidate vir insluiting in die geïntegreerde plaagbestuur programme wat huidiglik ontwikkel word vir gebruik in plaaslike boorde met die uiteindelike doel om residu-vrye vrugte te produseer. In hierdie studie word die biologiese en ekologiese faktore bestudeer wat die sukses van ‘n nematode-toediening gemik op kodlingmot beïnvloed. Hierdie studie het bewys dat die lokale SF41 isolaat van Heterorhabditis zealandica Poinar 1990 gebruik kan word om vrugtekratte te disinfesteer van kodlingmot. Die gebruik van dieselfde isolaat vir die disinfestasie van deklae is ook ondersoek. ‘n Metode van insek-inkamping is ook ontwikkel wat die evaluering van toedienings vergemaklik en meer effektief maak. Die omgewings-toestande wat ook bydrae tot die oorlewing en gevolglike sukses van ‘n toediening is ook ondersoek. Die biologiese beheer potensiaal van ‘n paar lokale isolate wat nog nooit voorheen teen kodlingmot getoets is nie, is ook bestudeer. Die isolate se effektiwiteit is ook bevestig in veldproewe en insek-bekampings metodes wat meer van toepassing is vir bogrondse plaaginsekte is ook geïdentifiseer. Resultate dui daarop dat vogverlies en gevolglike uitdroging van nematodes die grootste beperkende faktor is vir hierdie tipe toedienings in gematigde gebiede en ‘n stysel-gebaseerde formulasie is dus ondersoek om hierdie probleem te oorkom. Die uiteindelike gevolgtrekking van die studie was, dat alhoewel daar verskeie biologiese en ekologiese faktore is wat die oorlewing van nematodes beperk, daar tog verskeie maniere is om hierdie faktore te manipuleer en sodoende te oorkom, wat bydrae tot die uiteindelike sukses van ‘n toediening. Hierdie is die eerste studie wat werklik die praktiese gebruik van lokale entomopatogeniese nematodes vir die beheer van kodlingmot ondersoek en alle bevindinge kan geïntegreer word in toekomende riglyne vir die kommeriële gebruik van nematodes vir die beheer van kodlingmot.

Please read the abstract provided for each separate chapter and the General Summary (Chapter 9) added to the section 00front / Thesis (PhD (Entomology))--University of Pretoria, 2005. / Zoology and Entomology / unrestricted

Thesis (MScAgric (Conservation Ecology and Entomology)--University of Stellenbosch, 2009. / ENGLISH ABSTRACT: The obscure mealybug, Pseudococcus viburni (Signoret) (Pseudococcidae), is one of the common and serious pests of apples and pears in South Africa. The management of this pest in South Africa is dominated by the use of insecticides, while research into using natural enemies for biological control of mealybugs is still ongoing. Increasing concern over the environmental impact, pesticide residues in fruits, resistance, and expense associated with frequent use of insecticides make it necessary to investigate alternative biological control methods, such as the use of entomopathogenic nematodes, for the control of mealybugs. Entomopathogenic nematodes have proven comparable or even superior to chemicals in controlling certain insect pests, without residue problems or a harmful effect on the environment. An important aspect of using endemic nematodes includes the identification of species of nematodes and their symbiotic bacterial cells. A study was carried out to describe a new species of Steinernema, which was recovered during a previous survey in citrus orchards in three provinces of South Africa. Morphometrics, morphology, crossbreeding, drawings, light microscopy and Scanning Electron Microscopy (SEM) photographs were used to describe the new species. A cryopreservation method has been simplified and optimised for the long-term storage of Steinernema khoisanae (SF87) and Heterorhabditis zealandica (J34). Different cryoprotectants used included 15% glycerol, 8% ethylene glycol and 8% dimethyl sulfoxide (DMSO), in which S. khoisanae was incubated at room temperature for periods of two, three, four and five days, followed by a methanol wash. An optimum survival rate of 69% was obtained for S. khoisanae after a four-day incubation period in 15% glycerol. This technique has been used for the cryopreservation of H. zealandica, with a 78% survival rate. The thawed nematodes of both species were able to infect Galleria mellonella larvae after 42 days of cryopreservation (-196ºC) and were able to complete their life cycles. / AFRIKAANSE OPSOMMING: Die ligrooswitluis, Pseudococcus viburni (Signoret) (Pseudococcidae), is een van die algemene en ernstige peste van appels en pere in Suid-Afrika. Die bestuur van hierdie pes word tans in Suid-Afrika deur die gebruik van insekdoders gedomineer terwyl navorsing oor die gebruik van natuurlike vyande vir die beheer van P. viburni nog aan die gang is. Die verhoogde kommer oor die omgewing, residue in vrugte, weerstand, en die koste verbonde aan die gereelde gebruik van chemiese middels maak dit nodig om alternatiewe biologiese metodes van beheer, soos die gebruik van entomopatogeniese nematodes vir die beheer van witluis, te ondersoek. In ander lande is reeds aangetoon dat entomopatogeniese nematodes onder sekere omstandighede en vir sekere insekte gelykwaardige of selfs beter beheer kan gee as chemiese middels. ʼn Belangrike aspek van die gebruik van endemiese nematodes vir die beheer van insekte sluit die korrekte identifikasie van die spesies met hul geassosieerde bakteriese simbionte in. ʼn Nuwe spesie van Steinernema is uit ʼn vorige opname van entomopatogeniese nematodes in sitrusboorde in drie provinsies van Suid-Afrika geïsoleer. Morfometrie, morfologie, kruisteling, ligmikroskoop en SEM fotografie is gebruik om ʼn nuwe spesies te beskryf. ʼn Kriopreserveringsmetode is ontwikkel en ge-optimaliseer vir die langtermyn bewaring van Steinernema khoisanae (SF87) en Heterorhabditis zealandica (J34). Verskillende kriobeskermingsmiddels insluitend 15% gliserol, 8% dimetiel sulfokied (DMSO) en 8% etileen glikol, waarin S. khoisanae vir periodes van twee, drie, vier, en vyf dae geïnkubeer is, is teen kamertemperatuur, getoets, gevolg deur ʼn metanolbad. Optimum oorlewing van 69% is verkry vir S. khoisanae nadat die infektiewe larwes (IJ) vir vier dae in 15% gliserol gehou is. Hierdie tegniek is ook toegepas op H. zealandica, met 78% oorlewing van die IJ. Die ontvriesde nematodes van beide spesies was in staat om Galleria mellonella larwes suksesvol te infekteer en hulle lewensiklus te voltooi nadat hulle vir 45 dae onder kriopreservering gehou is teen -196ºC.