In many rivers, dams have interrupted the connectivity of migration routes for fish. While fishways can provide access between downstream and upstream habitats, it is important that passage can occur with minimal delay, energy expenditure, and physiological stress. The research presented here is based on investigations into fishway attraction and passage for the Gates Creek sockeye salmon (Oncorhynchus nerka, Walbaum) stock at the Seton River dam in British Columbia. The first part of this thesis examined the effect of changes in water discharge from the dam on the relationship between the physiological condition of sockeye and their behaviour in approaching the fishway entrance. Fish were caught and non-lethally biopsied under three normal operating discharge conditions at Seton River dam, and subsets of sampled fish were implanted with radio transmitters and released downstream of the dam. Indices of physiological stress and exhaustive exercise (e.g. plasma cortisol, glucose, lactate, osmolality and hematocrit) did not differ among the water discharge levels that were examined. Fish delayed in the tailrace below the fishway entrance significantly longer under intermediate discharge (19.9 h @ 12.7 m³s‾¹) than either the high discharge (9.3 h @ 15.8 m³s‾¹), or the low discharge (7.0 h @11.0 m³s‾¹;) conditions (P = 0.022, and P = 0.015, respectively). Delay time was similar under high and low discharge conditions (P = 0.617), and passage success was found to be independent of discharge (P = 0.356). The second part of this thesis investigated how prior physiological condition and subsequent swimming energetics and behaviours effected fishway passage success. Fish were captured and biopsied, before being implanted with electromyogram (EMG) transmitters and released near the downstream entrance of the fishway. Very few differences existed between successful and unsuccessful fish in body size, initial plasma physiology and energy state, and mean swim speed and energy use during passage. However, plasma Na+ concentration was significantly lower in unsuccessful fish (P = 0.022), which is suggestive of a depressed ionic state for unsuccessful fish. Generally, fish did not employ burst swimming during successful or failed attempts at passage, indicating that failure was probably not related to metabolic acidosis.

In many rivers, dams have interrupted the connectivity of migration routes for fish. While fishways can provide access between downstream and upstream habitats, it is important that passage can occur with minimal delay, energy expenditure, and physiological stress. The research presented here is based on investigations into fishway attraction and passage for the Gates Creek sockeye salmon (Oncorhynchus nerka, Walbaum) stock at the Seton River dam in British Columbia. The first part of this thesis examined the effect of changes in water discharge from the dam on the relationship between the physiological condition of sockeye and their behaviour in approaching the fishway entrance. Fish were caught and non-lethally biopsied under three normal operating discharge conditions at Seton River dam, and subsets of sampled fish were implanted with radio transmitters and released downstream of the dam. Indices of physiological stress and exhaustive exercise (e.g. plasma cortisol, glucose, lactate, osmolality and hematocrit) did not differ among the water discharge levels that were examined. Fish delayed in the tailrace below the fishway entrance significantly longer under intermediate discharge (19.9 h @ 12.7 m³s‾¹) than either the high discharge (9.3 h @ 15.8 m³s‾¹), or the low discharge (7.0 h @11.0 m³s‾¹;) conditions (P = 0.022, and P = 0.015, respectively). Delay time was similar under high and low discharge conditions (P = 0.617), and passage success was found to be independent of discharge (P = 0.356). The second part of this thesis investigated how prior physiological condition and subsequent swimming energetics and behaviours effected fishway passage success. Fish were captured and biopsied, before being implanted with electromyogram (EMG) transmitters and released near the downstream entrance of the fishway. Very few differences existed between successful and unsuccessful fish in body size, initial plasma physiology and energy state, and mean swim speed and energy use during passage. However, plasma Na+ concentration was significantly lower in unsuccessful fish (P = 0.022), which is suggestive of a depressed ionic state for unsuccessful fish. Generally, fish did not employ burst swimming during successful or failed attempts at passage, indicating that failure was probably not related to metabolic acidosis.

In many rivers, dams have interrupted the connectivity of migration routes for fish. While fishways can provide access between downstream and upstream habitats, it is important that passage can occur with minimal delay, energy expenditure, and physiological stress. The research presented here is based on investigations into fishway attraction and passage for the Gates Creek sockeye salmon (Oncorhynchus nerka, Walbaum) stock at the Seton River dam in British Columbia. The first part of this thesis examined the effect of changes in water discharge from the dam on the relationship between the physiological condition of sockeye and their behaviour in approaching the fishway entrance. Fish were caught and non-lethally biopsied under three normal operating discharge conditions at Seton River dam, and subsets of sampled fish were implanted with radio transmitters and released downstream of the dam. Indices of physiological stress and exhaustive exercise (e.g. plasma cortisol, glucose, lactate, osmolality and hematocrit) did not differ among the water discharge levels that were examined. Fish delayed in the tailrace below the fishway entrance significantly longer under intermediate discharge (19.9 h @ 12.7 m³s‾¹) than either the high discharge (9.3 h @ 15.8 m³s‾¹), or the low discharge (7.0 h @11.0 m³s‾¹;) conditions (P = 0.022, and P = 0.015, respectively). Delay time was similar under high and low discharge conditions (P = 0.617), and passage success was found to be independent of discharge (P = 0.356). The second part of this thesis investigated how prior physiological condition and subsequent swimming energetics and behaviours effected fishway passage success. Fish were captured and biopsied, before being implanted with electromyogram (EMG) transmitters and released near the downstream entrance of the fishway. Very few differences existed between successful and unsuccessful fish in body size, initial plasma physiology and energy state, and mean swim speed and energy use during passage. However, plasma Na+ concentration was significantly lower in unsuccessful fish (P = 0.022), which is suggestive of a depressed ionic state for unsuccessful fish. Generally, fish did not employ burst swimming during successful or failed attempts at passage, indicating that failure was probably not related to metabolic acidosis. / Forestry, Faculty of / Graduate

Co-evolution between parasites and their hosts result in extremely well-orchestrated and intimate relationships that are characterized by remarkable adaptations in the attack response of the parasite and the defense response of the host. To fully understand host-parasite interactions, these adaptations must be considered in the context of the ecological constraints in which they evolved. As a serious pest to salmon mariculture, Lepeophtheirus salmonis has been extensively studied; however, there are still several areas that require further research. Of utmost importance, and the topic of this thesis, is molecular basis for resistance to sea lice. The following chapters investigate this phenomena under the umbrella of ecological immunology using combined modern technologies of transcriptomics, proteomics and functional immunology with a focus on the primary interaction site. In the first chapter, I describe the key players involved in this host-parasite relationship with a focus on the primary interaction site, the louse-salmon interface, where there are responses by the louse (attack) and the salmon host (defense). Previous research indicated that an early aggressive inflammatory response at the louse-skin interface contributes to resistance in coho salmon; however, there are no data characterizing a site-specific response in resistant (pink and coho) and susceptible (Atlantic, chum) species. Accordingly in Chapter 2, I define site-specific cutaneous responses in Atlantic, pink and chum salmon to establish genetic biomarkers of resistance. Chapter 3 focuses on identification of cellular effectors using histochemical localization of biomarkers to characterize cellular populations activated at the louse-attachment site, while broadening the gene targets. Our notion of pink salmon as a resistant species is challenged by the common observation of migrating pink salmon supporting large populations of L. salmonis in the field. Thus the purpose of chapter 4 was to investigate potential mechanisms to explain variations in susceptibility as a function of life history. Host-parasite relationships are a product of both host and parasite responses; therefore, in chapters 5 and 6, I shift focus to the level of the parasite. In chapter 5 I present the first documented large-scale transcriptomic profiling of L. salmonis during feeding on both resistant (coho) and susceptible (Atlantic, sockeye) salmon. This was followed (chapter 6) by describing the proteomic profile of L. salmonis secretions after feeding on Atlantic salmon. In the seventh and final chapter, I present my conclusions on the molecular mechanisms for resistance to sea lice and discuss potential applications of this information for future louse control strategies. / Graduate