This study assessed the mycological and aflatoxin contamination of peanuts collected from Kinshasa, DRC and Pretoria, South Africa. Forty peanut samples were collected randomly at informal markets in the two cities and analysed for mycoflora and aflatoxins (B1, B2, G1 and G2) using standard methods. The results indicated that 95% and 100% of peanut samples collected from Kinshasa and Pretoria, respectively were contaminated with aflatoxigenic fungi with Kinshasa’s samples being the most contaminated (up to 49, 000 CFU/g). Seventy percent (70 %) of Kinshasa-samples and 35% of Pretoria-samples exceeded the maximum allowable limit of aflatoxin B1 set by JECFA (5 ppb). Statistical evidence showed a significant positive correlation between mycoflora and aflatoxin level for Kinshasa-samples (r = 0.4743, p < 0.005) while Pretoria-samples showed no correlation. The study reveals that high level of contamination in Kinshasa-samples could be due to the tropical nature of the climate and poor storage conditions as compared to Pretoria which is sub-tropical and sanitary regulations are enforced. / Life and Consumer Sciences / M. Sc. (Life Sciences)

Groundnut (Arachis hypogaea L.) is an important food and cash crop in Mozambique and production has been constrained by lack of high-yielding cultivars and disease infection. Objectives of this study were: 1) to identify farmers’ major groundnut production constraints and their preferences for cultivars; 2) to determine genotypic variation among landraces for agro-morphological traits and resistance to groundnut rosette disease; 3) to determine agronomic performance and resistance to groundnut rosette disease among advanced groundnut lines; and 4) to determine the inheritance of resistance to groundnut rosette disease. The study was conducted in northern Mozambique from 2008/2009 to 2010/2011. In attempt to identify farmers’ major groundnut production constraints and their preferences in cultivars, a participatory rural appraisal (PRA) was conducted in Namuno and Erati districts in northern Mozambique. Results from the PRA showed that farmers were aware of the constraints affecting groundnut production and productivity in the study area. The major constraints included groundnut rosette disease, insect pests, lack of seeds and improved cultivars, low soil fertility and lack of infra-structure. Groundnut rosette disease was ranked the most important constraint, and it was widespread in the region. Selection criterion for groundnut cultivars used by women differed from that used by men within village and across villages. However, high yield and oil content were the most important traits preferred by farmers followed by pod and seed size, earliness, disease and insect pest resistance. Fifty-eight groundnut landraces were collected from northern Mozambique (Nampula, Cabo Delgado, Niassa and Zambezia) and evaluated for variation in agro-morphological traits and resistance to groundnut rosette disease. The landraces showed high phenotypic diversity in agro-morphological traits. Clustering by nearest neighbour method indicated that the genotypes could be grouped into six clusters, indicating that agro-morphological diversity exists. The highest yielding genotypes were Pambara-4, Pambara-2, Pambara-6, lle-1, Imponge-1-Tom and Gile-5. There was considerable genetic variability for resistance to groundnut rosette disease among the landraces. Four landraces (PAN-4, Imponge-4, Pambara-3, Metarica Joao) were classified as resistant. No significant correlation was observed between seed yield and groundnut rosette incidence. Thirty-two improved lines were evaluated for performance in two growing seasons across three locations in northern Mozambique (Nampula, Namapa and Mapupulo). The results indicated that the highest yielding genotype was 23A and the highest yielding location was Namapa. There was a significant and negative correlation between seed yield and groundnut rosette disease indicating that the seed yield was negatively influenced by the disease. The results on stability analysis indicated that genotype 35B was the most stable across environments since it had coefficient of regression around unity (bi=1.024), high coefficient of determination (R2=0.999), and small variance deviation (var-dev=162.8), and 13 % above average seed yield. It is, therefore, concluded that genotype 35A could be recommended for cultivation on diverse environments of northern Mozambique. A trial was conducted using the parents and F2 populations derived from a 7 X 7 diallel cross. The test materials were infected with groundnut rosette disease using the spreader-row technique. The results indicated that no genotype was immune to disease. The mean squares due to both general combining ability (GCA) and specific combining ability (SCA) were significant indicating that additive and non-additive gene actions were involved in the expression of resistance to groundnut rosette disease. The general predictability ratio (GCA:SCA) was 0.97, indicating the predominance of additive over non-additive gene action in the inheritance of the disease. The study also found that groundnut rosette disease was controlled by two recessive genes. However, some genetic modifiers may also be present and influence disease expression. In general, the study revealed that breeding opportunities do exist, incorporating farmers preferred traits and major groundnut production constraints into new groundnut cultivars. Improving cultivars for resistance to groundnut rosette disease will be a major breeding focus, while selection for other traits and constraints will not be ignored. Resistance has been identified from local landraces. Advanced lines with high yields across environments were identified that can be recommended for release. The high significant additive effects observed for groundnut rosette disease implied genetic advance could be effective in the F2 and later generations through selection, although modifiers could slow the progress. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2011.

Peanuts contribute significantly to food security in western Kenya due to their high nutritional value and cash crop potential. However, the crop is highly susceptible to aflatoxin contamination. Yet little information is available on the extent of contamination in the region. This study explores the level and extent of contamination of peanuts by aflatoxins, Aspergillus section Flavi, Rhizopus and Penicillium spp. in western Kenya. A survey of 769 households was carried out in the Busia and Homa bay districts of Kenya. Information on peanut pre- and post-harvest practices was collected through person-to-person interviews. Aflatoxin levels of samples collected from each household were determined by indirect competitive ELISA method. Isolation of Aspergillus section Flavi, Penicillium and Rhizopus spp. was done on Modified Dichloran Rose Bengal (MDRB) agar, while identification of specific fungal species was done on Czapek yeast extract agar (CYA). Screening isolates of A. flavus and A. parasiticus for aflatoxin production was done in high sucrose yeast extract (YES) liquid medium, and the aflatoxin types identified on TLC plates, using analytical grades of aflatoxin B1, B2, G1 and G2 as reference standards. Common household preparation techniques (roasting, making peanut paste and boiling peanuts) were evaluated for effectiveness in reducing aflatoxin levels in peanuts. The boiling procedure was modified to test the effect of magadi (locally available salt used mainly to soften legumes, vegetables or maize while cooking), ammonium persulphate and sodium hypochlorite during soaking. Magadi, sodium bicarbonate and locally prepared ash was subsequently used to boil the nuts after soaking. Aflatoxin levels ranged from zero to 7525 ìg/kg. Most samples were safe to consume, based on the European Union and Kenya Bureau of Standards tolerance levels, with 63.7 per cent of all samples having undetectable levels, and only 7.54 per cent being contaminated based on KEBS standards. Peanuts from the Busia district, which has more of Lower Midland 1 (mean annual rainfall of 1600-1800 mm) and Lower Midland 2 (mean annual rainfall of 1300-1700 mm) agro-ecological zones had significantly (÷2=14.172; P=0.0002) higher levels of aflatoxin compared to the Homa bay district, that has more of the drier Lower Midland 3 agroecological zone (mean annual rainfall of 900-1500mm). Improved cultivars had significantly (÷2=9.748; P=0.0018) lower levels of aflatoxin compared to local cultivars. Over 60 per cent of all samples had A. flavus S-strain, A. flavus L-strain and A. niger. A. flavus S-strain was positively correlated with aflatoxin levels. As expected, grading of peanuts post-harvest significantly reduced the incidence of A. flavus S- and L-strains, while peanuts collected from farmers who belonged to producer marketing groups had a significantly lower incidence of A. flavus S- and L-strains, A. niger and Rhizopus spp. The incidence of A. flavus L-strain, A. niger and Rhizopus spp. was significantly higher in local landraces compared to the improved cultivars. Over 60 per cent of isolates produced Aflatoxin B1. Intermediate processes such as sorting and dehusking led to a significant decline in levels of aflatoxin. Soaking peanuts in water, magadi, NaOCl and ammonium persulphate significantly reduced aflatoxin levels by 27.7, 18.4, 18.3 and 1.6 per cent respectively; while boiling the peanuts in magadi, local ash, baking powder and water reduced aflatoxin levels by 43.8, 41.8, 28.9 and 11.7 per cent respectively. Using magadi during boiling increased the acceptability of the boiled peanuts while reducing the aflatoxin levels. The impact of aflatoxin levels in peanuts studied in this research is within safe limits except a few samples, and therefore aflatoxin contamination of peanuts at household level is not a serious threat. Contamination by aflatoxin and post-harvest fungi can be reduced by focusing on improved control strategies for wetter and more humid zones such as planting improved peanut cultivars and controlling pre-harvest pest damage. Conventional household peanut preparation techniques should be explored as possible aflatoxin management strategies in Kenya. The aflatoxin binding properties of locally available salts such as magadi and locally prepared ash should be further investigated. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

Groundnut (Arachis hypogaea L.) is one of the most important legume crops in Malawi. However, production among smallholder farmers has declined in recent years. One of the constraints affecting groundnut production is groundnut rosette disease (GRD). Therefore, the main objective of this study was to develop appropriate groundnut cultivars that are resistant to GRD, combined with other traits preferred by farmers, in order to improve income and food security of smallholder farmers in Malawi and beyond. The specific aims were; (i) to assess groundnut cropping systems used by smallholder farmers in Malawi, their varietal preferences, and production challenges (ii) to assess the genetic diversity among groundnut germplasm collected from ICRISAT, the Chitedze gene bank and farmers (iii) to identify sources of resistance to GRD and to its aphid vector (iv) and to understand the type of gene action governing GRD resistance, and to identify groundnut genotypes suitable for use as parents in breeding for GRD resistance. Assessment of groundnut cropping systems used by smallholder farmers, their varietal preferences, and production challenges was done by using a field survey and participatory rural appraisal (PRA) tools. The field survey was done in Lilongwe, Mchinji and Salima while the PRA was done in Kasungu, Lilongwe, and Salima. The assessment of genetic diversity among 106 groundnut genotypes collected from ICRISAT, Chitedze gene bank and farmers was done using 19 SSR markers. High throughput DNA extraction was done followed by polymerase chain reactions (PCR) after which the amplified products were analyzed. Evaluation of genotypes to identify new sources of resistance to GRD and its aphid vector was conducted under two test situations, one with high inoculum levels and one with low inoculum levels. Under high inoculum level, the infector row technique developed by Bock and Nigam (1990) which employs a susceptible variety as a disease spreader was used. While under low inoculum level, an aphid resistant variety instead of the infector row was used to control the aphids. Aphid resistance was studied under field and glasshouse conditions. Plants were planted in rows and at 14 DAS, 2 aphids were place on each plant. Aphid resistance was determined by observing the increase in number of the aphid population on the test plants. Gene action governing inheritance of resistance to GRD was studied under high disease pressure created by using viruliferous aphids. Parents and F2 generations and their reciprocals were used in the study. The trials were laid out in a glasshouse and aphids were infested a week after germination and were killed after 7 days using Dimethoate. Disease data was collected at 7, 14, 21 and 28 days after aphid infestation. The study on groundnut cropping systems, varietal preferences and production challenges revealed that most farmers grew groundnut alongside maize (Zea mayis L.) and beans (Phaseolus vulgaris L.) as food crops and tobacco (Nicotiana tabacum L.) and cotton (Gossypium hirsutum L.) as cash crops. The most preferred groundnut varieties grown by farmers were Chalimbana and CG 7. GRD was observed in half of the fields visited. However, 98% of the farmers interviwed had experienced it in their fields at some point, and 63.3% of the farmers believed that GRD was a major problem. Other challenges noted by farmers included lack of quality seed, poor extension support, lack of inputs, manipulation of the markets by buyers, and the failure of groundnut crops to meet the high standards required by the market. The examination of genetic diversity among 106 groundnut genotypes revealed a total number of 316 alleles with a mean of 17 alleles per locus. Polymorphic information content (PIC) and gene diversity values were high, which indicated that genetic diversity among the groundnut genotypes was high. The analysis of molecular variance indicated that 72.9% of the genetic variation observed in the genotypes was due to the variation between individuals within rather than between specific population groups. The evaluation of genotypes for resistance to GRD revealed five highly resistant genotypes namely ICG 9449, ICG 14705, ICGV-SM 05701, MW 2672 and MW 2694. Farmer preferred genotypes were rated as either moderately resistant or susceptible to GRD. Aphid resistance was only recorded in ICG 12991. Yield and GRD incidence were negatively and moderately correlated, which confirmed that GRD has the potential to reduce yield in groundnuts. The highly resistant genotypes were also high yielding except for genotype ICG 9449. Farmer preferred genotypes CG 7, Chalimbana and Tchayilosi, also gave above average yields, despite high disease incidence levels, which showed that these genotypes have tolerance to GRD. The study on gene action governing GRD resistance revealed information on combining ability effects of GRD resistance. The diallel analysis showed that GCA, SCA, reciprocal, maternal and non-maternal effects were all significant, which indicated that both additive and non-additive gene effects played a role in governing GRD resistance. The significance of SCA and reciprocal effects indicated that maternal parents played an important role in the expression of GRD resistance. However, the additive effects were predominant over non-additive gene effects. Four of the resistant genotypes, ICG 14705, MW 2694, ICGV-SM 05701, and MW 2672, were the best combiners for GRD resistance. Generally, the study indicates that there is still a need to develop new varieties with resistance to GRD having traits preferred by farmers to enhance adoption. There is also a need for breeders to work with extension staff in promoting new varieties and also there is need for extension staff to actively provide information to farmers on production and marketing of groundnut. Groundnut is widely known to have a narrow genetic base which has been a bottleneck to its improvement. However, the high genetic diversity observed in this study provides a basis for selection of appropriate parental genotypes for breeding programmes which can enhance further the broadening of the groundnut genetic base. Identification of the genotypes with high resistance to GRD in this study provides an opportunity to breed more GRD resistant materials. The observation that additive gene effects are predominant in governing GRD resistance means that GRD resistant materials can be improved by introgressing additive genes using recurrent selection breeding procedures. There is also a need to employ molecular techniques which can help in shortening the entire breeding process. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.