In this thesis we review the gauge/gravity duality and how it can be used to compute the thermodynamic properties and low-energy excitations of holographic quantum liquids - strongly-interacting field theories with a non-zero density of matter. We then study in detail the charge density excitations of two such liquids, the D3/D7 theory and the RN-AdS₄ theory, by computing the poles of their charge density Green's functions, and their charge density spectral functions. Although it is not a Landau Fermi liquid, the charge density excitations of the D3/D7 theory display many of the same properties as one, including a collisionless/hydrodynamic crossover as the temperature is increased. In contrast to this, the charge density (and energy density) excitations of the RN-AdS₄ theory do not share these properties but behave in a way that cannot be explained by Landau's theory of interacting fermionic quasiparticles. This is consistent with other results which indicate that this is not a Landau Fermi liquid.

This thesis contains four studies of the effects of disorder and randomness on strongly correlated quantum phases of matter. Starting with an itinerant ferromagnet, I first use an order-by-disorder approach to show that adding quenched charged disorder to the model generates new quantum fluctuations in the vicinity of the quantum critical point which lead to the formation of a novel magnetic phase known as a helical glass. Switching to bosons, I then employ a momentum-shell renormalisation group analysis of disordered lattice gases of bosons where I show that disorder breaks ergodicity in a non-trivial way, leading to unexpected glassy freezing effects. This work was carried out in the context of ultracold atomic gases, however the same physics can be realised in dimerised quantum antiferromagnets. By mapping the antiferromagnetic model onto a hard-core lattice gas of bosons, I go on to show the importance of the non-ergodic effects to the thermodynamics of the model and find evidence for an unusual glassy phase known as a Mott glass not previously thought to exist in this model. Finally, I use a mean-field numerical approach to simulate current generation quantum gas microscopes and demonstrate the feasibility of a novel measurement scheme designed to measure the Edwards-Anderson order parameter, a quantity which describes the degree of ergodicity breaking and which has never before been experimentally measured in any strongly correlated quantum system. Together, these works show that the addition of disorder into strongly interacting quantum systems can lead to qualitatively new behaviour, triggering the formation of new phases and new physics, rather than simply leading to small quantitative changes to the physics of the clean system. They provide new insights into the underlying physics of the models and make direct connection with experimental systems which can be used to test the results presented here.

The research presented in this dissertation presents a methodology to experimentally predict and simulate the mechanical behavior of polymers under high strain rate deformation. Specifically, the interplay between the effects of temperature and strain rate on polymer behavior is examined and then used as a tool to help recreate the high rate mechanical response of several different polymers: ranging from rubbers to amorphous polymers to composites. Multiple literature reviews are conducted and presented in this thesis, e.g. experimental mechanics test methods, high rate behavior, time-temperature equivalence, constitutive modeling, and temperature measurement methods. In accordance with mechanical theory, an experimental and analytical protocol in rate- and temperature- dependence was applied to a range of PVC materials ranging in plasticizer contents. Further to this, these PVC materials were modeled with a rubbery model describing the network stress seen in polymer behavior, and an amorphous polymer model to describe PVC low to high rate responses to deformation. This modeling develops insights in the adiabatic nature of high rate response. Time-temperature equivalence, and the temperature rise during adiabatic deformation, are studied and exploited in order to implement a proposed experimental method which simulates the high rate deformation of polymeric materials. The development of an experimental methodology to simulate and predict high rate behavior is presented, applied, and expanded to a range of materials: amorphous polymers (e.g. PVC 20wt% plasticizer, PMMA, PC) and composites (e.g. polymer bonded explosive simulant). The work also presents and highlights the fact that micro to nano-scale imaging may be used in parallel with the simulation method in order to better understand high rate behavior. Furthermore, in result of the studies conducted in this body of work, several novel techniques were developed, or improved upon, and applied to the current research (e.g. additions to time-temperature equivalence, temperature measurement methods at high, moderate, and low strain rates, and a method for measuring the high rate behavior of soft materials).

We study non-equilibrium and strongly-correlated dynamics in two contexts. We begin by analysing quantum many-body systems out of equilibrium through the lens of cold atomic impurities in Bose gases. Such highly-imbalanced mixtures provide a controlled arena for the study of interactions, dissipation, decoherence and transport in a many-body quantum environment. Specifically we investigate the oscillatory dynamics of a trapped and initially highly-localised impurity interacting with a weakly-interacting trapped quasi low-dimensional Bose gas. This relates to and goes beyond a recent experiment by the Inguscio group in Florence. We witness a delicate interplay between the self-trapping of the impurity and the inhomogeneity of the Bose gas, and describe the dissipation of the energy of the impurity through phononic excitations of the Bose gas. We then study the transport of a driven, periodically-trapped impurity through a quasi one-dimensional Bose gas. We show that placing the weakly-interacting Bose gas in a separate periodic potential leads to a phononic excitation spectrum that closely mimics those in solid state systems. As a result we show that the impurity-Bose gas system exhibits phonon-induced resonances in the impurity current that were predicted to occur in solids decades ago but never clearly observed. Following this, allowing the bosons to interact strongly, we predict the effect of different strongly-correlated phases of the Bose gas on the motion of the impurity. We show that, by observing the impurity, properties of the excitation spectrum of the Bose gas, e.g., gap and bandwidth, may be inferred along with the filling of the bosonic lattice. In other words the impurity acts as a probe of its environment. To describe the dynamics of such a strongly-correlated system we use the powerful and near-exact time-evolving block decimation (TEBD) method, which we describe in detail. The second part of this thesis then analyses, for the first time, the performance of this method when applied to simulate non-equilibrium classical stochastic processes. We study its efficacy for a well-understood model of transport, the totally-asymmetric exclusion process, and find it to be accurate. Next, motivated by the inefficiency of sampling-based numerical methods for high variance observables we adapt and apply TEBD to simulate a path-dependent observable whose variance increases exponentially with system size. Specifically we calculate the expected value of the exponential of the work done by a varying magnetic field on a one-dimensional Ising model undergoing Glauber dynamics. We confirm using Jarzynski's equality that the TEBD method remains accurate and efficient. Therefore TEBD and related methods complement and challenge the usual Monte Carlo-based simulators of non-equilibrium stochastic processes.

The self-assembly of structured particles into monodisperse clusters is a challenge on the nano-, micro- and even macro-scale. While biological systems are able to self-assemble with comparative ease, many aspects of this self-assembly are not fully understood. In this thesis, we look at the strategies and rules that can be applied to encourage the formation of monodisperse clusters. Though much of the inspiration is biological in nature, the simulations use a simple minimal patchy particle model and are thus applicable to a wide range of systems. The topics that this thesis addresses include: Encapsulation: We show how clusters can be used to encapsulate objects and demonstrate that such `templates' can be used to control the assembly mechanisms and enhance the formation of more complex objects. Hierarchical self-assembly: We investigate the use of hierarchical mechanisms in enhancing the formation of clusters. We find that, while we are able to extend the ranges where we see successful assembly by using a hierarchical assembly pathway, it does not straightforwardly provide a route to enhance the complexity of structures that can be formed. Pore formation: We use our simple model to investigate a particular biological example, namely the self-assembly and formation of heptameric alpha-haemolysin pores, and show that pore insertion is key to rationalising experimental results on this system. Phase re-entrance: We look at the computation of equilibrium phase diagrams for self-assembling systems, particularly focusing on the possible presence of an unusual liquid-vapour phase re-entrance that has been suggested by dynamical simulations, using a variety of techniques.

This thesis considers quantum impurity models that exhibit a quantum phase transition (QPT) between a Fermi liquid strong coupling (SC) phase, and a doubly-degenerate non-Fermi liquid local moment (LM) phase. We focus on what can be said from exact analytic arguments about the LM phase of these models, where the system is characterized by an SU(2) spin degree of freedom in the entire system. Conventional perturbation theory about the non-interacting limit does not hold in the non-Fermi liquid LM phase. We circumvent this problem by reformulating the perturbation theory using a so-called `two self-energy' (TSE) description, where the two self-energies may be expressed as functional derivatives of the Luttinger-Ward functional. One particular paradigmatic model that possesses a QPT between SC and LM phases is the pseudogap Anderson impurity model (PAIM). We use infinite-order perturbation theory in the interaction, U, to self-consistently deduce the exact low-energy forms of both the self-energies and propagators in each of the distinct phases of the model. We analyse the behaviour of the model approaching the QPT from each phase, focusing on the scaling of the zero-field single-particle dynamics using both analytical arguments and detailed numerical renormalization group (NRG) calculations. We also apply two `conserving' approximations to the PAIM. First, second-order self-consistent perturbation theory and second, the fluctuation exchange approximation (FLEX). Within the FLEX approximation we develop a numerical algorithm capable of self-consistently and coherently describing the QPT coming from both distinct phases. Finally, we consider a range of static spin susceptibilities that each probe the underlying QPT in response to coupling to a magnetic field.

Molecular biophysics is a rapidly evolving field aimed at the physics-based investigation of the biomolecular processes that enable life. In this thesis, we explore two such processes: the thermodynamics of DNA bending, and the mechanism of the RecQ DNA helicase. A computational approach using a coarse-grained model of DNA is employed for the former; an experimental approach relying heavily on single-molecule fluorescence for the latter. There is much interest in understanding the physics of DNA bending, due to both its biological role in genome regulation and its relevance to nanotechnology. Small DNA bending fluctuations are well described by existing models; however, there is less consensus on what happens at larger bending fluctuations. A coarse-grained simulation is used to fully characterize the thermodynamics and mechanics of duplex DNA bending. We then use this newfound insight to harmonize experimental results between four distinct experimental systems: a 'molecular vise', DNA cyclization, DNA minicircles and a 'strained duplex'. We find that a specific structural defect present at large bending fluctuations, a 'kink', is responsible for the deviation from existing theory at lengths below about 80 base pairs. The RecQ DNA helicase is also of much biological and clinical interest, owing to its essential role in genome integrity via replication, recombination and repair. In humans, heritable defects in the RecQ helicases manifest clinically as premature aging and a greatly elevated cancer risk, in disorders such as Werner and Bloom syndromes. Unfortunately, the mechanism by which the RecQ helicase processes DNA remains poorly understood. Although several models have been proposed to describe the mechanics of helicases based on biochemical and structural data, ensemble experiments have been unable to address some of the more nuanced questions of helicase function. We prepare novel substrates to probe the mechanism of the RecQ helicase via single-molecule fluorescence, exploring DNA binding, translocation and unwinding. Using this insight, we propose a model for RecQ helicase activity.