Studies were undertaken to identify the basis of differences in seed coat pigmentation between selected yellow- and brown-seeded Brassicaceae, and near-isogenic yellow- and brown-seeded lines of </i>Brassica carinata</i> (PGRC/E 21164). Histochemical analyses of dissected seed coats from six genera of the Brassicaceae revealed condensed tannin (proanthocyanidin) and phlobaphene pigments in dark-seeded species and in scattered spots in most yellow-seeded species. Anthoeyanins were not detected in any seed coat tissue of these species. In leaf tissue, anthocyanin content was lower in yellow-seeded 'B. carinata' at the three- to four-leaf stage grown at 20 to 25°C, compared to similarly grown brown-seeded plants. At 15 to 18°C, both yellow- and brown-seeded lines produced similar amounts of anthocyanin in the seedling leaves. In TLC and HPLC analyses, 't'-cinnamic acid, dihydromyricetin [trace amounts], dihydroquercetin, dihydrokaempferol and flavonols (quercetin, kaempferol) were more abundant in extracts from seed coats of yellow-seeded ' B. carinata' than in extracts from seed coats of brown-seeded ' B. carinata'. Myricetin was not detected in any seed coat extracts. Mass spectra were determined for phenylpropanoid and flavonoid aglycones from the seed coat extracts and for authentic standards. Dihydroflavanol reductase ('DFR') transcripts from developing seed were absent or less abundant at 5, 10, 20 and 30 days after pollination in the yellow-seeded line compared to the brown-seeded line of 'B. carinata'. 'DFR' transcripts in seedling leaves from the yellow-seeded line grown in warm, bright conditions were less abundant compared to similarly grown brown-seeded material. Seedlings grown at 15 to 18°C produced greater amounts of 'DFR' transcript in both yellow- and brown-seeded lines of 'B. carinata' compared to warm-grown plants. Data from these experiments suggest that seed coat pigmentation in the Brassicaceae is due to condensed tannin and phlobaphene accumulation, not anthocyanins, and that seed coat pigment biosynthesis is down-regulated at dihydroflavonol reductase. The regulatory factor controlling 'DFR' expression in developing seed may be temperature sensitive and also affect anthocyanin biosynthesis in seedlings and in related metabolic pathways: thioglycolic lignin concentration was significantly lower in the yellow-seeded Brassicaccae and in the seed coat tissue of yellow-seeded 'B. carinata' compared to dark-seeded samples.

An understanding of the genetic regulation of low-temperature (LT) tolerance is a prerequisite for the development of cold tolerant cultivars for high stress regions. The objectives of this study were to determine if LT tolerance genes are developmentally regulated. Low-temperature response curves were determined for spring wheat and barley genotypes grown at 4°C under 8 hour (h) short day (SD) and 20 h long day (LD) photoperiods for various acclimation periods up to 112 days. Final leaf number (FLN) and growth of shoot apex was used to determine the stage of phenological development. Expression of LT tolerance genes was determined by LT50. A delay in transition from the vegetative to the reproductive phase in SD sensitive, non-hardy AC Minto spring wheat and highly SD sensitive Dicktoo barley grown under SD resulted in an increased level and/or longer retention of expression of LT tolerance genes. In vernalization requiring winter genotypes photoperiod response of SD sensitive winter barley and wheat genotypes was reflected in the level of expression of LT tolerance genes beginning in the early stages of vernalization and plant development. A delay in transition to the vegetative stage allowed LT acclimation to continue to colder temperatures under SD compared to LD conditions in photoperiod sensitive genotypes. To determine the interrelationships between the developmental stages and LT gene expression, winter wheat genotypes were LT acclimated at 4°C under SD and LD from 0 to 112 d. Also, three de-acclimation (20C) and re-acclimation cycles were used beginning before and after vegetative/reproductive transition. Development of the SD de-acclimated plants was greatly delayed compared to LD plants as determined by shoot apex development, and this delay was reflected in the ability of SD plants to re-acclimate to much lower temperatures. Results indicated that expression of LT tolerance genes is governed by developmental regimes and plants in the vegetative phase have a much greater ability to LT acclimate than plants in the reproductive phase. These results support the hypothesis that level and duration of expression of LT tolerance genes determine the degree of LT tolerance and that LT tolerance genes are developmentally regulated.

Kabuli chickpea (<i>Cicer arietinum</i> L.) has two leaf types, the fern and unifoliate. Yield potential is limited for kabuli chickpea in Saskatchewan. It is limited by a short-season, a semi-arid environment, and end-of-season rainfall. Manipulating plant population, and choosing chickpea cultivars with the best leaf type for biomass production, radiation interception and yield for the early, middle, or late growth season, may increase chickpea yield. Therefore, the objectives of this study were: to (i) determine the relationship between leaf type and key growth parameters of six chickpea cultivars varying in leaf morphology at moderate and high plant population densities; (іі) to characterize the reaction of the fern and unifoliate leaf to altered canopy light environments. Different light environments were created by 50% defoliation at vegetative growth, first flower, and 50% shading from vegetative growth to first flower, as well as two light enrichment treatments initiated at the first flower and pod formation stages.<p> Fern leaf cultivars exhibited higher maximum light interception, seasonal cumulative intercepted radiation and a higher harvest index compared to unifoliate leaf cultivars. However, both leaf type canopies had less than 95% light interception for most of the season. The fern and unifoliate leaf type contributed to similar radiation use efficiency in three out of four location-years. In addition, fern leaf cultivars produced significantly higher seed yield than cultivars with unifoliate leaves.<p>Plant density influenced growth parameters. For example, the 45 plants m-2 treatment had a higher harvest index than the 85 plants m-2 treatment, in two location-years, while both population treatments were similar in the other two location-years. Yield of chickpea was increased by higher plant population in only one location-year, but was not significantly affected by plant population in the other location-years. The effect of canopy light environment manipulation on chickpea yield depended on the stages of plant development when they were applied. Defoliation at vegetative growth and first flower had no effect on yield. However, plants responded significantly to the 50% shade treatment; the crop growth rate, harvest index and yield were less in the shaded treatment compared to the control. Shading also increased plant height. Light enrichment treatments increased the yield. However, the degree of yield increase was greater when light enrichment occurred at first flower, than at the later stage of pod formation. These results highlighted the importance of the amount of irradiance during the flowering stage. It was concluded that chickpea breeders should select lines with fern leaves for improved radiation interception when breeding cultivars for semiarid short-season environments such as in Saskatchewan. Management and breeding practices should ensure that the crop can make efficient use of the solar radiation at flowering to maximize yield. Improvement at the canopy and subsequent yield level is yet to be made in Saskatchewan environments by increased light interception, increased growth before flowering, and increased and stable harvest index.

The objectives of the study were to provide a documented record of the vegetation of the grassland vegetation of the Red River Valley. The native prairies of this Valley are dominated by various combinations of Andropogon gerardi, Andropogon scoparius, Agropyron smithii, Bouteloua curtipendula, Calamagrostis inexpansa, Calamovilfa longifolia, Koeleria cristata, Muhlenbergia richardsonis, Sorghastrum nutans, Spartina pectinata, Sporobolus heterolepis, Stipa comata, Stipa spartea and Stipa viridula. At present only relicts of these grasslands remain. One hundred and fifty-one stands including 299 species, encompassing a wide range of floristic and habitat variability, were selected for study. The species composition frequency) of each stand was sampled by the use of thirty 0.5 X 0.5 m quadrats. A presence list was prepared for each stand and the dominant graminoid species determined by an estimate of cover contribution to the upper strata. The standing crop of green herbage of .34 stands was sampled by clipping five 0.5 X 0.5 m quadrats, and the material oven dried for weight determination. Environmental measurements were taken to determine physiographic position and soil profile characteristics. Soil samples were collected from the "A" horizon of each stand for textural analysis, field capacity, salinity and pH determinations. An analysis based on indicator species determined by physiographic association, indicated that the various species responded in a continuous manner to a moisture gradient. This was suggested by a gradation of importance from one physiographic habitat to another, with its position of peak performance in association with a specific drainage position. Vegetational types were also associated with physiographic position, but the dominant species and to a lesser degree secondary species showed modification of behavior by soil texture. The total number of species and their levels of importance (frequency) within the various vegetational types was used as a measure of diversity. The mid prairie dominance types with high numbers of species, many with high importance, were the most diverse of all types examined. It was further indicated that mid prairie stands in the northern portion of the area studied had higher diversity than all others. Geographic differences in diversity were related to historical development of the grasslands. The yield of green herbage varied according to prairie division, leading dominant, soil texture and geographic location. A high positive correlation between green herbage yield and length of growing season suggested that geographic location was the most effective determinant in production, with southern stands producing about 100% more green herbage than comparable stands in the north. The species comprising the grasslands of the Red River Valley suggest an amalgamation of species of eastern and western origin. The dominant graminoids, however, are most closely associated with the grasslands to the east and suggest the placement of the Red River Valley grasslands within the True Prairie.

The need to curb increased pollution of environmental resources caused by excessive nitrogen (N) fertilizer application and N fertilizer use inefficiencies in wheat (Triticum aestivum) production systems warrants an inexpensive, sustainable, environmentally sound solution, the root system. Wheat germplasm containing the short arm of rye chromosome 1 (1RS) has recently been found to have larger root system sizes in pot experiments in addition to previously documented higher yields and resistance to leaf, stem and yellow rust. These 1RS lines could therefore be useful in wheat breeding efforts targeting superior root system traits for yield improvements as well as environmental and economic benefits. This dissertation evaluated field root biomass production of Pavon 76 and its wheat-rye (1RS) translocations, effects of root biomass on nitrogen use efficiency, and the temporal variation in their root morphological traits and early growth vigor. The translocation 1RS.1BL had 9 and 23 % higher total root biomass than Pavon 76 at jointing and physiological maturity respectively. Root N uptake peaked at the jointing, where it comprised 22-34% of the total plant N uptake and was lowest at physiological maturity for all genotypes. The inclusion of root N uptake reduced the N utilization efficiency and N harvest index by 6-14 and 7-15% respectively, indicating that the use of only the above ground plant parts over estimates these parameters. In pot experiments, the translocation 1RS .1AL had 12 and 39% higher root biomass than Pavon 76 at anthesis and maturity respectively. 1RS.1BL had 38% higher root mass and 16% longer roots than Pavon76 at physiological maturity. This suggests the existence of differences among the genotypes in below ground partitioning of assimilates at peak nutrient demand (anthesis) for grain filling, and also in rates of root decay and senescence. The lack of differences in root morphological traits among genotypes at early growth stages (6-46 days after sowing) indicates that there are minimal differences in early root growth vigor. The 1RS translocations could therefore expand the wheat breeder's tool box in selections for superior root traits for improved NUE without adverse effects on grain yield.

The accumulation of salts in soil is an important agricultural problem that limits crop productivity. Salts containing sodium (Na⁺) are particularly problematic, as cytosolic Na⁺ can interfere with cellular metabolism and lead to cell death. Maintaining low levels of cytosolic Na⁺, therefore, is critical for plant survival during growth in salt. Mechanisms to regulate Na⁺ accumulation in plant cells include extrusion of Na⁺ from the cell and sequestration of Na⁺ into intracellular compartments. Both of these processes are controlled in part through the action of Na⁺/H⁺ exchangers belonging to the Cation/Proton Antiporter-1 (CPA1) gene family. Genes belonging to this family have been identified in both salt-sensitive and salt-tolerant species, suggesting that salt-tolerant species may have evolved salt tolerance through modification of these existing pathways. The research presented here has focused on understanding how salt tolerance has evolved in Brassicaceae species, and particularly on the role that CPA1 genes have played in the adaptation to salinity of Eutrema salsugineum. Specific projects have sought to understand 1) how copy number variation and changes in coding sequences of CPA1 genes contribute to salt tolerance in E. salsugineum and its salt-tolerant relative Schrenkiella parvula, 2) whether functional or regulatory changes in Salt Overly Sensitive 1 (SOS1) from E. salsugineum (EsSOS1) contribute to its enhanced salt tolerance, and 3) whether accessions of Arabidopsis thaliana differ significantly in their response to salt stress.The results indicate that EsSOS1 and SOS1 from S. parvula (SpSOS1) both confer greater salt tolerance in yeast than SOS1 from A. thaliana (AtSOS1) when activated by the complex of the SOS2 kinase and SOS3 calcium-binding protein, whereas only EsSOS1 confers enhanced salt tolerance in the absence of activation. When expressed in A. thaliana, EsSOS1 also confers greater salt tolerance than AtSOS1 through regulatory changes that likely involve differences in expression pattern. Together, the results presented here suggest that mechanisms regulating cellular Na⁺ accumulation that exist in salt-sensitive crop species could be altered to enhance growth in salty soils. In addition, the 19 A. thaliana accessions used to create the MAGIC population were shown to differ significantly in their response to salt stress.

Upland cotton (Gossypium hirsutum) is cultivated in many contrasting production environments and is often subjected to a combination of abiotic stresses such as high temperature (heat) and water deficit (drought) stress. In the present dissertation, two recombinant inbred line populations were constructed from heat-tolerant and -susceptible parental lines and evaluated in multiple environments under the presence of two treatments, well-watered (heat stress) and water-limited in the presence of high temperature (combination of heat and drought stresses). We assessed two agronomic traits, seed cotton yield and lint yield, as well as six fiber traits, lint percent, micronaire, length, strength, uniformity, and elongation. Fiber traits had moderate to very high broad-sense heritabilities, while heritabilities of agronomic traits were lower for both populations in each irrigation regime. Correlations between traits were not effected by the irrigation regimes. A stability analysis across the range of environments tested demonstrated that high seed cotton yield performance and greater stability may play a role in tolerance to the combination of heat and drought stresses. Additionally, we constructed linkage maps for both recombinant inbred line populations and mapped QTL controlling variation all eight traits. A total of 138 QTL were identified across populations for the eight traits. Climate change in the form of rising temperatures and reduced water availability will increase the occurrence of the combination of heat and drought stresses in a farmer's field. Thus, current cotton breeding programs will need to focus on the development of cotton varieties tolerant to heat, drought, and the combination of the two.

The purpose of this study was to test the feasibility of allowing concurrent enrollment in the College of Agriculture to selected high schools in the state of Utah. "Introduction to Agricultural Plant Science" (Plant Science 100 ) was the course being tested. A purposive sampling technique was used to identify four vocational agriculture programs to participate. There were 86 high school students in the study and 38 college students who took the course on campus at Utah State University. In this study, 47.7% of the high school students passed the course with a 70% average or above. Comparisons between high school and college student performance showed a marked difference in percentage points accumulated on exams and the final, with the college students performing more consistently.

As one of the most diverse and ecologically important clades of life, fungi are best known as pathogens, saprotrophs, mycorrhizae, and lichens. Yet an enormous amount of previously unknown diversity occurs among endophytic and endolichenic fungi--species-rich, horizontally transmitted fungi that live within asymptomatic photosynthetic structures such as leaves and lichens. Here, I explore the biodiversity of these understudied symbiotrophs and the ecological and biogeographic factors influencing their communities.To evaluate methods currently used in ecological studies of environmental samples of fungi, I assessed inter- and intraspecific divergence of a fast-evolving locus for four genera commonly found as endophytes, and compared analytical methods for identifying and delimiting OTUs. Then I used the most robust methods to show that after soil contact, seeds of a focal tree species contain diverse fungi that are closely related to endophytes and pathogens.To explore the ecological specificity of symbiotrophic fungi, I examined endophytic, endolichenic, and saprotrophic communities inhabiting physically proximate hosts in a biotically rich area of southeastern Arizona. I found that endolichenic fungi are largely distinct from plant-associated fungi, with the exception of a group of ecologically flexible symbionts that occur in lichens and mosses. Although numerous endophytes were found in non-living leaves, fungi that were highly abundant in leaf litter were seldom found as endophytes.To assess symbiotroph biodiversity and ecological specificity at a broad geographic and phylogenetic scale, I isolated>4100 endophytic and endolichenic fungi from diverse communities of plants and lichens across five climatic regions in North America. I found that the abundance, diversity, and composition of these nearly ubiquitous fungi differ as a function of climate, locality, and host. Differences among communities reflect environmental characteristics more strongly than geographic distance.Last, I addressed a series of hypotheses regarding the ecological specificity of fungi inhabiting living and non-living leaves. I show that like endophytes, saprotrophic communities are structured by environmental characteristics, and at small spatial scales by host and leaf status. Yet, differences in communities between living leaves and leaf litter suggest that most endophytes either rapidly complete their life-cycle or are out-competed by robust saprotrophs once leaves senesce.

Calcium is a component of signal transduction pathways that allow plants to respond to numerous endogenous and environmental signals during growth and development. Calcium-mediated signaling involves multiple components including: 1) channels, pumps, and exchangers that act in concert to generate a change in cytosolic calcium, 2) calcium-binding proteins that sense the calcium change, and 3) downstream target proteins that modify enzyme activity and gene expression needed for the subsequent response. One method for achieving specificity during calcium signaling is through regulation of the calcium-binding proteins that perceive changes in cytosolic calcium. These proteins can be regulated through differences in expression in response to stimuli, localization within the cell or plant, affinity for calcium, and interaction with downstream target proteins; all of which can result in specific cellular responses. My projects have focused on the Arabidopsis thaliana (Arabidopsis) CALCINEURIN B-LIKE10 (CBL10) calcium-binding protein, and specifically on understanding: 1) how post-transcriptional regulation of the CBL10 gene is used to modulate seedling growth in saline conditions (salinity), and 2) CBL10’s function in the flower during growth in salinity. In addition, 3) I have examined the roles of two putative CBL10-interacting proteins in plant growth and development. CBL10 is alternatively spliced into two transcripts; CBL10 encoding the characterized, full-length protein and CBL10 LONG A (CBL10LA) encoding a putative truncated protein due to a pre-mature termination codon within a retained intron. When seedlings are grown in the absence of salinity, both alternatively spliced transcripts are detected; however, in response to salinity, levels of the CBL10LA transcript are reduced. My data suggest a model in which the relative abundance of the two transcripts regulates the SALT-OVERLY-SENSITIVE (SOS) pathway involved in maintaining cellular sodium ion homeostasis. The presence of CBL10LA in the absence of salinity ensures that the SOS pathway is inactive. The removal of CBL10LA in response to saline conditions results in CBL10 activation of the SOS pathway to prevent sodium ions from accumulating to toxic levels in the cytosol. Successful fertilization during flowering requires the coordinated development of stamens and pistils. Stamens must elongate and anthers dehisce to release pollen onto the stigma while the pistil prepares to receive the pollen and promote growth and targeting of the female gametophyte. When the cbl10 mutant is grown in salinity, flowers are sterile due to decreased stamen elongation, reduced anther dehiscence, and abnormal pistil development. My studies demonstrated that the SOS pathway is not involved in maintaining flower development in salinity and indicate that CBL10 functions in different pathways to regulate vegetative and reproductive development during growth in saline conditions. An in silico search for Arabidopsis proteins that might interact with CBL10 resulted in the identification of two components of the Mediator complex involved in the regulation of transcription in eukaryotes. While additional studies I carried out suggest that interaction with CBL10 is unlikely, I have shown that these proteins are important for plant growth in high levels of chloride and in maintenance of growth in short-day conditions.