Root architecture governs the uptake of water and nutrients from the soil and thus is essential for plant growth and survival. The control of lateral root branching is a crucial aspect of determining root architecture, and is a process largely controlled by the phytohormone auxin, which promotes lateral root organogenesis from founder cells within the vasculature and also subsequent lateral root elongation. A small posttranslationally modified peptide, CTERMINALLY ENCODED PEPTIDE1 (CEP1) is a bioactive 15-amino acid peptide cleaved from a larger precursor protein previously shown to negatively affect primary root elongation and lateral root branching in Arabidopsis thaliana. Within this thesis, genetic, biochemical and pharmacological approaches are used to demonstrate that another member of the CEP family, CEP5, reduces primary root length and negatively regulates lateral root branching in Arabidopsis thaliana with minor effects on aboveground architecture. CEP5 is also demonstrated to have an antagonistic relationship with auxin, with increased abundance of CEP5 leading to downstream stabilisation of the auxin signalling repressor AUXIN/INDOLE ACETIC ACID (AUX/IAA) proteins. Correspondingly, reduced abundance of CEP5 increases auxin responses, including enhanced lateral root progression. These studies suggest CEP5 regulates lateral root branching through attenuation of auxin responses.

It is thought that climate change will have a major impact on species distributions by changing the habitat suitability for species. Species distribution modelling is a modern approach to assess the potential effect of climate change on biodiversity. We used 11 environmental variables with the MaxEnt algorithm to model the distributions of 114 Egyptian medicinal plant species under current conditions, then projecting them into three different future times (2020, 2050, and 2080) under two different climate-change emission scenarios (A2a and B2a), under two hypotheses about the capability of the species for dispersal (unlimited and no dispersal). Species richness maps for current and future times were produced. We tested the value of Egypt’s Protected Areas under climate change by estimating the species richness inside and outside under each scenario. We assessed Egyptian medicinal plants based on IUCN Red List categories and criteria, and then used the SDMs for conservation planning with and without consideration of socioeconomic factors using Zonation software. The A2 emission scenario was more harmful than B2 under all assumptions. Species richness inside Protected Areas was significantly higher than outside for all models. Based just on the records, between 75% and 90% of species could be classified as Least Concern, according to the assumptions made. Similarly, based on SDMs all species could be classified as LC at the current time, whilst in the future under climate change, up to 18% of species face the risk of extinction, depending on assumptions and based on the absolute time gap between the two future times. Based on 10 years, most species were assigned as Least Concern. Areas within PAs were no better in conservation prioritization value than area outside when socioeconomic costs (especially the Human Influence Index) were taken into account. Species distribution models appear to be extremely useful for conservation planning under climate change, particularly when only sparse data are available. Socioeconomic information adds a new dimension to conservation planning, which is actually misleading and incomplete without it.

This thesis investigates the influence of hedges and roads (linear landscape features) on the patch-to-patch foraging movements of insect pollinators and consequent pollen- mediated gene flow in white clover, Trifolium repens. Experimental arrays were located within the lowland UK agricultural landscape incorporating a range of patch separation distances from 25m to 250m (using both artificial and natural linear features). Mark-re-sight, “residence” (the number of visits per foraging bout) and pollen transport observations were used to observe pollinator movement characteristics between experimental patches and re-parameterise an existing model of patch-to-patch gene flow. Levels and directions of plant gene flow were observed with phenotypic and isozyme markers, allowing validation of model predictions. Harmonic radar technology was used for the first time to track butterfly flight paths; data support the hypothesis of a 150 to 200m perceptual range, and non-random flight direction but limited association to wind direction, hedges, tracks or fence lines. Mark-re-sight observations indicated similar levels of patch visitation regardless of patch location, and trap-lining by Bombus spp. only between patches 50m or less apart. A single track road significantly enhanced gene flow between connected patches and was not a barrier to gene flow across it. In contrast, a hedge did not facilitate enhanced gene flow between connected patches and was a partial barrier where it occurred between patches. Model predictions of gene flow (1.3%, range 0.8 to 2.5%) agreed well with observed levels (ranging from 0.2 to 31.4%). It is proposed that pollinator movement observations alone could not provide an accurate means of estimating low level gene flow unless the variables of residence and pollen carryover were also considered. The possible influence of spatial and temporal variables including the role of hetero-specific forage on pollinator foraging movements and consequent plant gene flow from the local to landscape scale is also discussed

The formation of viable pollen relies upon a complex interaction of genes in time and space within the anther. One of the most important maternal tissues involved in the production of functional pollen is the tapetum, which is a highly active tissue that plays a major secretory role during pollen development. This project involved the molecular analysis of genes that are expressed in the anther tapetum and are critical for functional pollen development. A number of these are thought to be regulated by, or interact with MALESTERILITY1 (MS1), a transcriptional regulator of male gametogenesis (Yang et al., 2007) or ABORTED MICROSPORE (Xu et al., 2010). Work involved analysis of an ABC transporter (At3g13220), which has been shown to be critical for viable pollen formation and confirmed as directly regulated by AMS (Xu et al., 2010). Another protein, POB2, which appears to be involved in ubiquitin-based proteolytic breakdown, is thought to interact with the MS1 protein. POB2 was identified from a previous screen of a stamen specific yeast-2-hybrid library using the MS1 protein. This interaction has been subsequently confirmed in this work by further yeast two hybrid analyses and bifunctional fluorescent complementation. Further work involved verification of this interaction in vitro and in planta by pull-downs and transient expression of proteins in E. coli and Nicotiana benthamiana respectively. Other work focused on identifying factors that regulate MS1 expression; this identified novel male sterile mutants derived from screening fast neutron mutagenised seed carrying the MS1Prom:MS1-GFP functional fusion protein. Microscopic observation of the fluorescent reporter showed changes in the stage specific expression of MS1 in some of these mutants. Backcrossing of the male sterile mutants with the parental plants (carrying the MS1Prom:MS1-GFP fusion construct) and the ms1 mutant confirmed one as a new mutant and the other three as being allelic to the ms1 mutation. Gene mapping of this mutant was subsequently conducted and suggest that it may be located on chromosome 3. These results are providing insight into the regulatory network of MS1 and AMS during anther development.

The structural organisation of species-rich plant-pollinator networks is important to understanding their ecology and evolution and is essential for making informed conservation and restoration decisions. This thesis reports on a study located at different altitudes in nine tributary valleys of the Sacred Valley, Vilcanota Highlands, Peru. The assemblages of flower visitors were described and the plant-flower visitor matrices were analysed and compared to those found from other montane systems. Additionally, the thesis also addressed how the European honeybee (Apis mellifera) fits into these communities. Previous studies have predicted that abundance, diversity, and importance of hymenopterans as pollinators decrease with increasing altitude, where they are replaced by Lepidoptera and Diptera. Contrary to other temperate montane areas, Hymenoptera were more diverse at higher elevations. Diptera was the most abundant functional group overall but did not significantly increase in abundance with altitude as predicted. Species richness of visited plants reached a maximum at the highest altitudes. Using ordination analysis, hummingbirds, honeybees, flies and beetles were identified as major functional groups of flower visitors with significantly different visitation profiles. Nestedness analysis revealed that the plant-flower visitor networks had a similar structure to other published networks, consisting of core groups of generalist plants and animals which interacted with one another and with specialised flower visitors and plants, respectively. The core species varied in identity between valleys, but were usually the species in greatest abundance, implying that the networks were abundance structured. In addition, 85% of the interactions were observed only in single valleys. This context specificity may have implications for the conservation of plant-pollinator interactions in the Sacred Valley. Comparisons of the pollinator efficiencies of honeybees, hummingbirds, native bees and moths to Duranta mandonii (Verbenaceae) demonstrated significant variation among flower visitors in rates of visitation, pollen removal ability and contribution to fruit set. This variation was not correlated: hummingbirds were by far the most frequent visitors but removed virtually no pollen and did not contribute to fruit set. Despite the taxonomic diversity of flower visitors, the main pollinators were large native bumblebees and honeybees. Results highlighted the importance of measuring efficiency components when documenting plant-pollinator interactions, and also demonstrated that visitation rates may give little insight into the relative importance of flower visitors. Overall, the study showed that Apis was the most generalist flower visitor and a dominant core species within networks. However, although Apis visited a relatively large proportion of the flora compared to native taxa, they only intensively utilised a small proportion of available plant species. No evidence was found from the surveys to suggest that honeybees used interference competition and displaced other species. It was suggested that because specialised rare species are frequently dependent on a core of generalist taxa honeybees may play an important role for the possibilities of rare species to persist. However, perhaps the greatest threat to biodiversity and the persistence of plant-flower visitor communities in the Sacred Valley is from the destruction and fragmentation of habitats and from facilitative interactions between native and alien plants, mediated through visitation from honeybees

Nutrient dynamics of two sub-types of peat swamp forest, mixed swamp forest and low pole forest, in the upper catchment of the Sebangau River in Central Kalimantan, Indonesia were studied. Three permanent study plots, 50 x 50 m, were established in each forest sub-type to facilitate collection of throughfall, stemflow, litterfall, decomposition, above ground and below ground biomass, peat and water samples. Graphical presentation, Wilm's method, and analysis of variance were carried out for both sub-types of forest in order to analyse data to detect any significant differences. Rainfall is slightly acid (pH 5.96+0.35) with a predominance of NH4-N, Ca and K. Throughfall and stemflow are enriched in most elements analysed compared to rainfall and the pH values are lower. Throughfall pH is 4.76±0.33 in mixed swamp forest and 4.37±0.33 in low pole forest. Stemflow pH is 4.03±0.19 in mixed swamp forest and 3.57±0.11 in low pole forest. Greater litter production was obtained in mixed swamp forest (8,411 kg ha-1 yr-1) than in low pole forest (6,534 kg ha-1 yr-1). Dry weight of the different fractions of litterfall (leaves, branches, reproductive parts and other debris) for MSF and LPF were 6216,1246, 460 and 489 kg ha-1 and 4864,1251,169 and 251 kg ha-1, respectively. Decomposition rates (k) in the MSF and LPF are 0.396 yr-1and 0.285 yr-1 respectively. Above ground biomass in MSF and LPF are 313,899 and 252,547 kg ha-1 respectively, while below ground (root biomass) is 26,533 and 14,382 kg ha respectively. Nitrogen is the predominant nutrient in peat soil at 50 cm depth in both MSF and LPF, while manganese is the lowest. Calcium is the element in greatest amount in water run off in MSF and LPF at 8,15 and 7.15 kg ha-1 yr-1 respectively, while manganese was the lowest at 0.01 and 0.02 kg ha-1 yr-1, respectively. Nutrient inputs were higher than nutrient losses during the 1-year study period with the greatest nutrient gain for calcium while manganese was the lowest in both sub-types of forest. Moreover, the results of this study highlight that nutrient concentrations in peat soils are low and the substrates are acidic. These factors are likely to be strongly limiting to agricultural development, including plantations of estate crops and trees. Under such conditions the maintenance of intact forest for natural ecosystem services (e. g. carbon storage, watershed, biodiversity maintenance, timber production in certain time period) is likely to be a far wiser land use from a long-term perspective.

Radioisotopes of caesium (Cs) and strontium (Sr) have been distributed in the environment due to weapons testing, nuclear power production and accidents at nuclear facilities. Radiocaesium and radiostrontium are of major concern in the medium to long term following accidental releases as they have high energies, long half lives (137Cs≈30 years; 90Sr≈29 years) and their easy assimilation into biological systems due to their similarity to the biologically important elements potassium (K) and calcium (Ca), respectively. Radio-caesium and -strontium are transferred to humans primarily via plant root uptake, and therefore minimising this uptake has been the focus of a number of remediation strategies, such as ploughing and fertiliser application. Species or cultivar substitution, where a species/cultivar that has higher uptake is replaced by a species/cultivar that has lower uptake, has been proposed as an effective and socially acceptable remediation strategy for contaminated agricultural land, but not enough is known about its efficacy for it to be recommended internationally. The aim of this thesis is to evaluate the potential of species or cultivar substitution as a remediation strategy for contaminated agricultural areas. Chapter 2 consists of meta-analysis of the available data (115 experiments) on the inter-cultivar variation in Cs and Sr accumulation by 27 plant species. Chapter 3 includes experiments conducted in the laboratory (UK) and two experiments in the field (Ukraine) investigating inter-cultivar variation in radiocaesium and radiostrontium accumulation in Brassica oleracea, and whether consistently lower-accumulating cultivars could be identified. Chapter 4 details analysis of samples from grass breeding experiments in Aberystwyth and Edinburgh (UK) from four forage grass species; hybrid ryegrass (Lolium perenne L. x Lolium multiflorum Lam.), L. perenne, L.multiflorum and Festuca arundinacea Shreb., and investigates inter-species and inter-cultivar variation in uptake of stable Cs and Sr. Hybrid ryegrass cultivars that were lower-accumulating in Cs and/or Sr were also identified. Chapter 5 compares the stable Cs and Sr uptake in six L. perenne and two F. arundinacea cultivars grown in Aberystwyth and Narodychi (Ukraine). Chapter 6 compares the performance in terms of yield and forage quality (elemental concentrations, digestibility and water soluble carbohydrate content) of six hybrid ryegrass cultivars and ten F. arundinacea cultivars identified as consistently lower-accumulating in Cs and/or Sr against the performance of two commercial hybrid ryegrass cultivars. The mean inter-cultivar variation in Cs and Sr was 1.8-fold and 2.0-fold,respectively when 27 plant species were studied. Thirty-five-fold variation in radiocaesium and 23-fold variation in radiostrontium was found between c.70 Brassica oleracea cultivars. In two field experiments in Ukraine, five cultivars had consistently lower radiocaesium concentration ratios and two cultivars consistently lower radiostrontium concentration ratios. One cultivar had lower radiocaesium and radiostrontium concentration ratios. Festuca arundinacea cultivars had lower Cs and Sr concentration ratios than cultivars of hybrid ryegrass, L. perenne and L. multiflorum. Three out of 17 hybrid ryegrass cultivars had consistently lower Cs concentration ratios, two cultivars consistently lower Sr and one consistently lower Cs and Sr. Despite differences in soil properties and environmental conditions, F. arundinacea cultivars grown in Aberystwyth and Narodychi accumulated less stable and radioactive Cs and Sr than L. perenne cultivars. One L. perenne cultivar also accumulated less Cs and Sr at both sites. F. arundinacea cultivars accumulated less Cs and Sr than commercial hybrid ryegrass cultivars, but alsohad up to 59% lower yield and a reduction of up to 19% in K accumulation, up to 46% in Ca accumulation, up to 7% in dry matter digestibility and up to 17% in water soluble carbohydrate content. Selecting lower accumulating cultivars was found to reduce Cs and Sr accumulation less, but with a smaller yield penalty and a smaller reduction in digestibility and water soluble carbohydrate content. It is concluded that species and cultivar substitution could be an effective remediation strategy in contaminated agricultural land provided implications for yield and quality are considered.