Direct, gas phase propylene epoxidation reactions are carried out on model slabs representing Ru-Cu(111) bimetallic and Cu(111) metallic catalyst surfaces with periodic Density Functional Theory (DFT) calculations. Ru-Cu(111) surface is modelled as a Cu(111) monolayer totally covering the surface of Ru(0001) surface underneath. The catalytic activity is evaluated following the generally accepted oxametallacycle mechanism. It is shown that the Ru-Cu(111) surface has a lower energy barrier (0.48 eV) for the stripping of the allylic hydrogen of propylene and a higher energy barrier (0.92 eV) towards propylene oxametallacycle (OMMP) formation compared to 0.75 eV barrier for OMMP formation and 0.83 eV barrier for allylic hydrogen stripping on Cu(111), and thus ineffective for propylene oxide production based on the investigated models and mechanism. In order to analyze the observed inability of the Ru-Cu(111) surface to selectively catalyze propylene oxide formation, a Lewis acid probe, SO2, was adsorbed on the oxygenated Cu(111) and Ru-Cu(111) surfaces and the binding energies, a measure of the basicity of the chemisorbed oxygen on the surfaces, on two systems are compared. As a conclusion, the reason behind this ineffectiveness of the Ru-Cu(111) surface for selectively catalyzing propylene epoxidation is related to the higher basicity of the atomic oxygen adsorbed on Ru-Cu(111) compared to the oxygen on Cu(111). The results are consistent both with recent publications about propylene epoxidation and previous studies performed about the structure of Ru-Cu catalysts.

Thesis (Ph. D.)--University of Washington, 2003. / Vita. Includes bibliographical references (leaves 115-124).

This thesis is based on theoretical studies of the molecular and electronic structure of solvated ions and molecules. Very detailed information of the system can be obtained from theoretical calculations, but a realistic model is dependent on an accurate computational method. Accurate calculations of core level electronic spectra, and evaluation of the modeling against experiments, are central parts of this work. The main tools used for characterization of the systems are high-level quantum chemistry and molecular dynamics simulations.  Molecular components in solutions are involved in many key processes converting sunlight into chemical or electrical energy. Transition metal complexes, with their pronounced absorption in the visible light region of the electromagnetic spectrum, are core components in various energy conversion applications, and the iodide/triiodide redox couple is a commonly used electrolyte. The local structure of the electronic valence in transition metal complexes and the details of the solvation mechanisms of electrolyte solutions are investigated through the combination of computational modeling and core level spectroscopy. The studies of model systems show that interactions between the solute and solvent are important for the electronic structure, and knowledge of the details in model systems studied can be relevant for energy conversion applications. Furthermore, high-level quantum chemistry has been applied for interpreting time-resolved spectra, where the electronic structure of a metal complex is followed during a photoinduced chemical reaction in solution. With advanced modeling in combination with recent experimental developments, more complex problems than previously addressed can be dissected. / <p>At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 3: Submitted. Paper 8: Manuscript.</p>

Computational modelling of chemical systems is most easily carried out in the vacuum for single molecules. Accounting for environmental effects accurately in quantum chemical calculations, however, is often necessary for computational predictions of chemical systems to have any relevance to experiment. This PhD thesis focuses on accounting for environmental effects in quantum chemical calculations by quantum mechanics/ molecular mechanics (QM/MM) approaches, taking on diverse examples from the solid state, the liquid phase and the protein environment. The methods are applied to compute a variety of properties from transition metal NMR properties of molecular crystals and enzymes, via conformational properties of zwitterions in aqueous solution, to an intramolecular amidation reaction in peptides. Chapter 3 concerns QM/MM calculations of molecular properties in the solid state, both molecular crystals and metalloenzymes, with a focus on transition metal chemical shift and EFG properties. We demonstrate that solid-state effects on such properties in molecular crystals can be accounted for by a simple general black-box QM/MM approach. We also describe preliminary QM/MM calculations of 51V anisotropic NMR properties for a vanadium-dependent enzyme. In Chapter 4 the focus is on solvent effects on the conformational preference of a small zwitterionic molecule, 3F-γ-aminobutyric acid (3F-GABA), calculated using QM/MM molecular dynamics simulations. NMR spin-spin coupling constants in solution are also calculated. Our simulations highlight the difficulty of accounting for solvation effects well enough to achieve agreement with experimental observations. Chapter 5 concerns the reaction mechanism of an intramolecular amidation reaction in a bacterial peptide, predicted by QM/MM calculations. We predict a reaction mechanism that accounts well for the experimental observations both for the wild-type and mutants. We demonstrate that environmental effects can often be satisfactorily accounted for by QM/MM approaches, thus helping to bridge the gap between theory and experiment.

The study is focused on the thermal entanglement of spin chains. Chains consisting of two and three qubits are considered. These chains are considered open because they are coupled to bosonic baths at different temperatures. The baths represent the environment. The dynamics of these open systems are examined as are the effects of different parameters - such as bath temperature - on the entanglement of the spins. The measure of entanglement used in these cases is the concurrence. Comparisons are made between a model that assumes a strong spinspin interaction and one that assumes a weak one. In all these cases, analytical solutions for the system dynamics are presented. It is found that at large times, all systems converge to a state that depends only on bath temperature. It is also found that increases in bath temperatures diminish the entanglement between spins and that at high enough temperatures the entanglement vanishes altogether. The time and temperature dependence of the entanglement is different for the two models that are studied. / Thesis (M.Sc.)-University of KwaZulu-Natal, Westville, 2010.

No description available.

Acrylic free radical polymerization at high temperature proceeds via a complex set of mechanisms, with many rate coefficients poorly known and difficult to determine experimentally. This problem is compounded by the large number of monomers used in industry to produce coatings and other materials. Thus, there is a strong incentive to develop a methodology to estimate rate coefficients for these systems. This study explores the application of computational chemistry to estimate radical addition rate coefficients for the copolymerization of acrylates, methacrylates and styrene. The software package Gaussian is used to calculate heats of reaction (ΔHr) values for monomer additions to monomeric and dimeric radicals, using minimum energy structures identified and characterized for the reactants and products. The Evans-Polanyi relationship is applied to estimate reactivity ratios from the relative differences in ΔHr. The validity of this methodology is tested through a comparison of calculated monomer and radical reactivity ratios for acrylate, methacrylate, vinyl acetate, ethene and styrene systems to available experimental data for copolymerization systems. The methodology is found to work for some systems while there is computational breakdown in others due to steric crowding and/or breakdown of the Evans-Polanyi relationship. / Thesis (Ph.D, Chemical Engineering) -- Queen's University, 2008-04-25 16:13:12.091 / NSERC

Chemical reactions usually involve the conversion of reactants to products by overcoming an energetic barrier. Most commonly, this process can be assisted by adding energy through heat (thermochemistry), light (photochemistry) or electric current (electrochemistry). The fourth option is to overcome the reaction barrier through application of mechanical work, termed mechanochemistry. This method has received much attention from the scientific community in the last decade. Both theoretical and experimental studies have been performed, demonstrating the ability of mechanochemistry to activate reactions, with a strong focus on ringopening reactions. The vast majority of studies have focused on unimolecular reactions involving bond-rupture, which is very intuitively activated by the application of tensile stress. However, bimolecular reactions, which often involve bond formation as well as rupture, have received much less attention. In this thesis, we seek to change this by undertaking an in-depth study of mechanochemical activation of addition reactions to carbon-carbon double bonds, which involve the formation of two single bonds while the double bond becomes a single bond. We observe that large barrier changes can be induced by applying external force to reactions of this type, and the magnitude of these changes can be controlled by the choice of alkene substrate. By studying the changes induced in the geometry of the substrate, we are able to begin explaining the origins of the barrier reduction effect. In addition, by studying the contributions to the barrier change from mechanical work and the contributions from geometry changes, we discover that steric hindrance to a reaction can play a very significant role in the mechanochemical activation of the reaction. / Thesis (Master, Chemistry) -- Queen's University, 2010-11-29 10:43:04.945

Spin-orbit coupling and the related effects of A-doubling and spin-splitting have been well known to spectroscopists for some considerable time. The importance of these phenomena stems from the advent of radioastronomy and the study of the interstellar medium. Identification of the molecules, and the molecular transitions, in the interstellar dust clouds is necessary for an understanding of the cooling process by which these clouds can contract to form new stars.

This thesis presents time-dependent density functional theory studies on electronic and vibronically resolved linear and nonlinear optical absorption and dichroism spectra of organic molecules. Special attention has been paid to the influence of solvent environment and molecular vibrations on one-, two- and three-photon absorption and one- and two-photon circular dichroism. It is found that dielectric medium as described by polarizable continuum model can enhance remarkably three-photon absorption cross section of a highly conjugated fluorene derivative, for which the simplified two-state model is shown to be largely inadequate. Origin-invariant density functional calculations on one- and two-photon circular dichroisms of a chiral molecule confirm that the recently developed CAMB3LYP functional performs better than the popular B3LYP functional for Rydberg-states. The first experimental measurement of TPCD spectra is performed on an axial chiral system in tetrahydrofunan, where the double L-scan technique is applied. Theoretical calculations well reproduce the experimental profiles when both the electron correlation and the solvent effect are taken into account. Vibronically resolved one- and two-photon absorption spectra of charge-transfer molecules have been obtained using a Linear Coupling model, where the 'borrowing mechanism' for the so-called Herzberg-Teller contribution is analyzed in detail. It is shown that Herzberg-Teller contribution can introduce a change of sign to the chiral responses of a molecule without the involvement of different electronic states, which has important consequences for the assignment of absolute configurations of chiral molecules. Adiabatic harmonic Franck-Condon model is also applied to simulate vibronically resolved one- and two-photon circular dichroism spectra of the same chiral system, where the sign-inversion and the interference between Franck-Condon and Herzberg-Teller contributions are also observed. / QC 20100727