Nototodarus sloanii is an important component of the Southern Ocean fauna, and the basis of a large commercial fishery. Despite this, much is unknown about the biology of this species. This study examines some aspects of the biology of N. sloanii. Stomach contents analysis identified no significant differences in diet between male and female squid. Sixteen putative species, including 12 identifiable teleosts, 2 crustaceans, and 2 cephalopods were identified in the diet of this species. The euphausid, Nyctiphanes australis was the most important prey item, Lanternfish, Lampanyctodes hectoris, and Pearlside, Maurolicus muelleri, were of secondary importance. Squid were aged using counts of statolith micro-increments and back-calculation from the date of capture showed that hatching occurred between August and February, with a peak in the austral winter/spring and another smaller peak in the austral summer. Growth rate for male squid differed depending on whether squid were hatched in the winter/spring or summer. Growth rates were more variable in the winter/spring-hatched individuals, and they attained larger size than summer-hatched squid. This was not the case for female squid. Mean age for immature winter/spring-hatched squid was significantly higher than for summer-hatched squid, although there was no significant difference in mean mantle length or body mass. No significant differences between mean age, mantle length, or body mass for same-gender mature squid, regardless of hatch season, were apparent. However, mature female squid hatched in the winter/spring season were significantly longer (ML) than mature male squid hatched in winter/spring. No squid was found to be older than 211 days. All squid had started to mature by 91-120 days old and all were fully mature at 180 days. Validation experiments run on juvenile squid using calcein markers were inconclusive, however the increments in the statoliths were very similar to those found in other validated species of ommastrephid squid, thus for the purposes of this study they were assumed to be of daily periodicity. Gladius increments identify a gender difference in growth rate, with female squid having a shorter initial slow growth phase than male squid. Gonadosomatic indices (GSIs) were calculated for male and female squid. These were low (7.12%�0.3% for females and 1.9%�0.2% for males) suggesting that these squid are intermittent spawners. This is further supported by a histological examination, which found germinal cells of different stages present in the same gonad. Lack of mature individuals in this study means that these results are suggestive rather than definitive; more examination of the reproductive process of this squid is required. Histological examination was also used to validate the Lipinski maturity scale for use with this species, while some misidentification occurred the scale is useful to place squid into the broad categories of immature, maturing, or mature. New maturity scales were created for N. sloanii utilising these broad categories. Finer-scale identification is not possible using this scale, as maturation appears to be a continuous process. Morphometric measurements were taken from both hard and soft tissues and were analysed using non-metric multidimensional scaling and analysis of similarity. Divisions were only apparent in the hard structure measurements. They did not appear to be age, dietary or reproductive differences.

Nototodarus sloanii is an important component of the Southern Ocean fauna, and the basis of a large commercial fishery. Despite this, much is unknown about the biology of this species. This study examines some aspects of the biology of N. sloanii. Stomach contents analysis identified no significant differences in diet between male and female squid. Sixteen putative species, including 12 identifiable teleosts, 2 crustaceans, and 2 cephalopods were identified in the diet of this species. The euphausid, Nyctiphanes australis was the most important prey item, Lanternfish, Lampanyctodes hectoris, and Pearlside, Maurolicus muelleri, were of secondary importance. Squid were aged using counts of statolith micro-increments and back-calculation from the date of capture showed that hatching occurred between August and February, with a peak in the austral winter/spring and another smaller peak in the austral summer. Growth rate for male squid differed depending on whether squid were hatched in the winter/spring or summer. Growth rates were more variable in the winter/spring-hatched individuals, and they attained larger size than summer-hatched squid. This was not the case for female squid. Mean age for immature winter/spring-hatched squid was significantly higher than for summer-hatched squid, although there was no significant difference in mean mantle length or body mass. No significant differences between mean age, mantle length, or body mass for same-gender mature squid, regardless of hatch season, were apparent. However, mature female squid hatched in the winter/spring season were significantly longer (ML) than mature male squid hatched in winter/spring. No squid was found to be older than 211 days. All squid had started to mature by 91-120 days old and all were fully mature at 180 days. Validation experiments run on juvenile squid using calcein markers were inconclusive, however the increments in the statoliths were very similar to those found in other validated species of ommastrephid squid, thus for the purposes of this study they were assumed to be of daily periodicity. Gladius increments identify a gender difference in growth rate, with female squid having a shorter initial slow growth phase than male squid. Gonadosomatic indices (GSIs) were calculated for male and female squid. These were low (7.12%�0.3% for females and 1.9%�0.2% for males) suggesting that these squid are intermittent spawners. This is further supported by a histological examination, which found germinal cells of different stages present in the same gonad. Lack of mature individuals in this study means that these results are suggestive rather than definitive; more examination of the reproductive process of this squid is required. Histological examination was also used to validate the Lipinski maturity scale for use with this species, while some misidentification occurred the scale is useful to place squid into the broad categories of immature, maturing, or mature. New maturity scales were created for N. sloanii utilising these broad categories. Finer-scale identification is not possible using this scale, as maturation appears to be a continuous process. Morphometric measurements were taken from both hard and soft tissues and were analysed using non-metric multidimensional scaling and analysis of similarity. Divisions were only apparent in the hard structure measurements. They did not appear to be age, dietary or reproductive differences.

Thesis (M.Sc) -- Memorial University of Newfoundland. / Typescript. Bibliography : leaves 122-128. Also available online.

The chokka squid, Loligo vulgaris reynaudii, is a commercially important species supporting a large, high-value export fishery for South Africa. This study reviewed its population dynamics and reproductive biology. Biological information collected on biannual research cruises from September 1986 to April 1999 on the Agulhas Bank as well as information from commercial vessels operating in the inshore environment collected between April 1988 and July 1989 and again between June 1999 and May 2000 were analysed. Size ranges of juveniles, subadults and adults were calculated and used to determine seasonal distribution and abundance patterns. Based on Gonadosomatic Indices (GSI) and percentages of mature squid in each month, two peak reproductive seasons in summer and winter were identified although mature squid were present all year round. Seasonal peaks in sex ratio were also apparent with males outnumbering females by up to 4:1 in the peak-breeding season. The size at which squid matured, demonstrated both spatial and temporal patterns. Squid caught in spring matured at a smaller size than squid caught in autumn and at successively smaller sizes from west to east across the Agulhas Bank. Size at maturity was highly variable especially in males where “sneaker males” were evident in both seasons. Length-to-weight linear regression revealed significant differences between maturity stages and between sexes. Females demonstrated steeper length-to-weight regression slopes than males in the peak-breeding seasons. Aspects of squid biology pertinent to fishery management were highlighted as well as potential areas where research should be directed in order to develop future stock assessment models.

Erratic and highly variable catches in the South African chokka squid Loligo vulgaris reynaudii fishery, cause socio-economic hardship for the industry and uncertainty for resource managers. Catch forecasting can reduce this problem as it is believed that catch variability is strongly influenced by environmental factors. In this study, data were collected at varying temporal and spatial scales. Data for the hourly time-scale study were collected from 1996-1998, aboard commercial vessels, whilst for the longer time-scales, data were extracted for Kromme Bay (a single fishing area) from existing databases (1991-1998) that were comprised of compulsory catch returns and oceanographic data. The environment-catch relationship for chokka squid on the inshore spawning grounds was then investigated using multiple correlation and regression analysis, analysis of variance, contingency table analysis and cross-correlation statistical techniques. This simple, direct, 'black box' statistical approach was relatively successful in developing a predictive capability. On a short time-scale (hourly), the regression model accounted for 32% of the variability in catch, with turbidity the main determinant (13%). On a daily monthly time-scale, the best prediction model was on a monthly scale, accounting for 40% of the variability in catch. The principal determinant, bottom temperature anomaly (11 %), was found to lag one month forward. Seasonal and diel catch variations induced changes in the relative importance of turbidity, water temperature and wind direction on catches. A strong, positive relationship was found between easterly winds (which cause upwelling) and catch, particularly in summer. Catch rates, however, decreased with an increase in turbidity. The correlation between temperature and catch was generally negative, however, higher catches were associated with a temperature range of 13-18°C. Highest catch rates were associated with easterly winds, zero turbidity conditions and sea surface temperatures from 15.0-16.9°C. Selected case studies (in situ observations) suggested that upwelling and turbidity events act as environmental triggers for the initiation or termination of the spawning process, respectively. A holistic approach is required to improve predictive capability of chokka squid abundance. Although short-term predictability remains essential (i.e. hourly-scale), future research should concentrate on long-term prediction models (e.g., monthly time-scales) involving greater spatial variation, which are the most important for management.

In the past decade we have seen fast development of new quantum technologies that promise to revolutionise communications and computing. Many different routes are explored to physically implement such quantum technologies. Among others, we can mention superconducting circuits, spin-based devices and photonic devices.  An active area of research concerns hybrid quantum systems, which aim at combining the best properties of these different implementations. Recently quantum acoustics has been gaining interest as a potential intermediate in such hybrid systems. Indeed, phonons can couple to many different degrees of freedom and could therefore form an interface between different quantum systems.One method to convert microwaves to an acoustic signal relies on the exploitation of the piezoelectric effect. However, for transducer devices based on the piezoelectric effect, the operating bandwidth has remained limited. By using tunable matching circuits, we propose a device capable of performing piezoelectric transduction over large bandwidths. The tunability is achieved by using SQUID transmission lines. This work reports some preliminary studies towards the creation of such a platform. We conduct measurements at cryogenic temperatures on suspended lithium niobate delay lines. These allow us to characterise the dependence of the IDT response on various parameters such as the number of fingers and the angle relative to the underlying crystal. We show that certain angles favour transduction into a single acoustic mode. In parallel, we characterise transmission lines consisting of one-dimensional arrays of SQUIDs. By applying magnetic flux to these lines, we show that it is possible to tune their impedance. These experiments improved our understanding of both IDTs and SQUID transmission lines and pave the way for the implementation of our experimental platform. / Under det senaste decenniet har vi sett en snabb utveckling av ny kvantteknologi som kommer att revolutionera telekommunikation och databehandling. Många olika vägar utforskas för att fysiskt realisera sådan kvantteknologi. Bland annat kan vi nämna supraledande kretsar, spinbaserade anordningar och fotoniska anordningar.  Ett aktivt forskningsområde är hybrida kvantsystem som kombinera de bästa egenskaperna hos dessa olika tillämpningar. På senare tid har kvantakustik fått ökat intresse som en potentiell mellansteg i sådana hybridsystem. Fononer kan kopplas till många olika frihetsgrader och skulle därför kunna fungera som ett gränssnitt mellan olika kvantsystem.En metod för att omvandla mikrovågor till en akustisk signal bygger på utnyttjandet av den piezoelektriska effekten. För transduceranordningar som bygger på den piezoelektriska effekten har dock den operativa bandbredden fortfarande varit liten. Genom att använda avstämbara anpassningskretsar föreslår vi en anordning som kan utföra piezoelektrisk transduktion över stora bandbredder. Avstämbarheten uppnås med hjälp av SQUID-överföringsledningar. I detta arbete rapporteras några preliminära studier för att skapa en sådan plattform. Vi utför mätningar vid kryogena temperaturer på upphängda fördröjningsledningar av litiumniobat. Dessa gör det möjligt för oss att karakterisera IDT-svarets beroende av olika parametrar, t.ex. antalet fingrar och vinkeln i förhållande till den underliggande kristallen. Vi har visat att vissa vinklar gynnar transduktion till ett enda akustiskt läge. Parallellt karakteriserar vi transmissionsledningar som består av endimensionella matriser av SQUIDs. Genom att applicera magnetiskt flöde på dessa linjer visar vi att det är möjligt att ställa in deras impedans. Dessa experiment förbättrade vår förståelse av både IDT:er och SQUID-överföringslinjer och banar väg för genomförandet av vår experimentella plattform.

published_or_final_version / Environmental Management / Master / Master of Science in Environmental Management

Thesis (M.Sc.) -- Memorial University of Newfoundland. / Typescript. Bibliography : leaves 232-238. Also available online.

It was previously thought that the South African chokka squid Loligo reynaudi is exclusively an inshore, shallow water spawner. Although spawning mostly within shallow bays (<60 m) the presence of squid eggs in trawls at depths up to 130 m indicates this species frequently makes use of deeper spawning areas on the mid-shelf. The extent of mid-shelf spawning (referred to as deep spawning) and the contribution to recruitment has yet to be assessed. Studies have shown mid-shelf bottom temperature to vary considerably from those inshore, suggesting chokka squid spawn in two very different oceanographic environments. Considering these apparent environmental differences, what leads to the mid-shelf environment becoming a suitable spawning habitat? Does a suitable benthic habitat, required for the attachment of egg pods, occur on the mid-shelf? These questions are not only important for determining the extent of deep spawning, but also to the understanding of factors “driving” deep spawning. The fate of deep spawned hatchlings is another unknown. It has been proposed that the main chokka squid inshore spawning grounds are positioned to exploit the net westward currents on the Eastern Agulhas Bank, i.e. paralarvae would be transported west from the hatching site to the cold ridge, an area of high primary and secondary productivity on the Central Agulhas Bank. This concept has come to be known as the Western Transport Hypothesis. Lagrangian ROMS-IBMs (regional ocean model system – individual-based model) predict the net westward transport of paralarvae from both the inshore and deep spawning grounds, to the cold ridge. These simulations were used to investigate the transport of hatchlings to the cold ridge feeding grounds before the exhaustion of yolk reserves. The fate of paralarvae on reaching the feeding grounds has not yet been investigated. This work has contributed new knowledge to our understanding of deep spawning and its role in recruitment. Specific aims of this study were to (1) determine the extent, range and importance of the deep spawning grounds relative to those inshore; (2) investigate the deep spawning ground habitat (Agulhas Bank mid-shelf) morphology and oceanographic environment; (3) determine the transport and survival of deep spawned hatchlings; and (4) investigate the origin and distribution of chokka squid paralarvae on the Agulhas Bank. The extent, depth range and importance of the deep spawning grounds, relative to those inshore was assessed using 23 years of demersal trawl survey data. Data for both the west and south coasts of South Africa were examined for egg capsules. No spawning was found on the west coast. Data showed that chokka squid preferred the Eastern Agulhas Bank for spawning. Spawning occurred not only inshore but also on the mid-shelf extending to depths of 270 m near the shelf edge. The majority of deep spawned eggs however, were found in the depth range 71-130 m. Squid egg density markedly decreased beyond 70 m, suggesting delineation between the inshore and deep spawning grounds. Total egg biomass calculations for depths shallower and deeper than 70 m indicated the coastal area to be strongly favoured, i.e. 82 vs. 18%. These results contest the commonly accepted notion that chokka squid is an inshore spawner and redefine the spawning grounds to extend across the shelf. Apart from an initial study investigating bottom temperature on the mid-shelf, very little is known about the deep spawning habitat. St Francis Bay, a commonly used spawning location, was chosen as a demonstration area for further study. The deep spawning grounds (71-130 m) were mapped and benthic habitat described from underwater video footage. A study investigating cross-shelf bottom conditions was undertaken off Thys Bay. CTD data were used to compare seasonal bottom temperature and oxygen on the St Francis Bay inshore and deep spawning grounds. Squid movement between the two spawning habitats was assessed using filament tagging. Predation and fishing pressure across the spawning grounds was reviewed. The mid-shelf benthic habitat was found to be similar to that inshore and available for spawning. Despite the generally colder bottom temperatures on the mid-shelf, this study showed that bottom temperature in deeper waters can at times be warmer than inshore. Although mid-shelf warming events lasted from a few hours to a number of days, they resulted in similar conditions to those on the inshore spawning grounds. It is likely these events act to expand or shift spawning habitat. The movement of squid between the two spawning habitats makes it possible for them to seek patches of warm bottom water with appropiate substrate. This suggests they are spawning habitat opportunists. Predation and fishing pressure appear to be higher on the inshore spawning grounds. It is feasible that this also forces spawners to seek out more favourable habitat offshore. An individual-based model was used to predict the fate of mid-shelf and inshore hatched paralarvae. Within the model, both the highly productive cold ridge and inshore spawning grounds were considered feeding or nursery areas. Paralarvae were released from six inshore and six deep spawning sites, spanning the coast between Port Alfred and Knysna. All paralarvae not reaching the feeding areas before the exhaustion of yolk-reserves (≤5 days), not retained within the feeding grounds (≥14 days), and not retained on the Agulhas Bank after exiting the feeding grounds were considered lost. This work illustrated the dependence of paralarval transport success on both spawning location and time of hatching, as established in earlier studies. The current IBM has expanded on initial work, emphasizing the importance of the cold ridge and inshore spawning grounds as nursery areas for deep and inshore spawned paralarvae, respectively. This work has highlighted the complex interactions between processes influencing recruitment variability for chokka squid. Possible relationships between periods of highest recruitment success and spawning peaks were identified for both spawning habitats. Based on the likely autumn increase in deep spawning off Tsitsikamma, and the beneficial currents during this period, it can be concluded deep spawning may at times contribute significantly to recruitment. This is particularly true for years where the cold ridge persists into winter. Data on chokka squid paralarval distribution are scarce. Paralarval distribution and abundance, in relation to Agulhas Bank oceanography, was investigated using bongo caught paralarvae and corresponding oceanographic data. Individual-based models (IBMs) were used to predict the origin or spawning site of the wild caught paralarvae, with reference to inshore versus deep spawning. Although failing to predict realistic points of origin, this study provided evidence to support a number of scenarios previously assumed to influence chokka squid recruitment. First is the possible influence of coastal upwelling on the retention, and hence spatial distribution, of paralarvae on the inshore spawning grounds. The second factor thought to impact recruitment is the loss of paralarvae from the Agulhas Bank ecosystem. This study confirmed the removal of paralarvae from the Eastern Agulhas Bank due to Agulhas Current boundary phenomena and resultant offshelf leakage. In addition, data suggested that the formation of the cold ridge could enhance retention on the Central Agulhas Bank, and so prevent offshelf leakage from the Central and Western Agulhas Bank. A synthesis of the main conclusions is presented. Implications of the findings and directions for future research are discussed.

It is currently hypothesised that the chokka squid (Loligo reynaudi) consist of a single stock. This was tested through a spatial comparison of the morphology of this species. Forty three morphometric characters were measured from 1079 chokka squid collected from three regions: the south coast of South Africa, the west coast of South Africa, and southern Angola. While no significant differences were found for the hard body parts, results from discriminant function analyses showed the soft body morphometric characters from each of the three regions differed, with an overall correct classification rate of 100% for males and 99% for females in all three regions. Due to the existing model being used to assess the resource currently being updated it was not feasible to apply this model to the area-disaggregated data from this study. Rather, the CPUE trends and catches from the area-disaggregated data were compared against those of the area-aggregated data, as a first attempt to discern any appreciable differences which would suggest the use of disaggregated data in future assessments. Both the trawl and jig CPUE trends from the area-disaggregated analysis differed only slightly from those of the area-aggregated data. Similarly, the spring and autumn biomass trends for the main spawning area (east of 22°E) followed the same trends as for the full area. It is therefore concluded that there is currently no need to assess the resource on an area-disaggregated basis.