In these studies we evaluated specific environmental stimuli relevant to Salmonella virulence and physiology in the gastrointestinal tract of chickens. Results from Salmonella growth in steady state, glucose-limiting continuous culture (CC) indicated that the optimal growth condition was observed between 0.05 h-1 and 0.27 h-1 dilution rates (D). Cell protein concentrations increased proportionally with an increase in D at each steady state, but after D 0.27 h-1 there was a reduction in the cell protein concentrations as the D increased. Genetic responses generally indicated that the lowest D exhibited highest hilA relative expression. Relatively higher expression of hilA was largely observed at low D (low glucose) (0.0125 h-1, 0.025 h-1, 0.05 h-1). Salmonella incubated in CC at different pH shifts demonstrated that cell protein concentration, glucose utilization, Yield ATP and Acetate:Propionate ratios were influenced by an increase in pH (6.14 to 7.41). These parameters increased and decreased consistently with a corresponding increase and decrease in pH. Polymerase chain reaction-based denaturant gradient gel electrophoresis showed that the overall amplicon band patterns of microbial similarity have demonstrated that hens molted with Alfalfa (ALC+) diet were similar to the Full-Fed (FF+) treatment group. Additional, FF+ and ALC+ treatment groups exhibited a higher percentage similarity coefficient (>90%) than the feed deprived treatment group. Fermentation response from cecal inocula on feed substrates revealed that alfalfa based samples yielded consistently higher short chain fatty acid levels when compared to other feed substrates. Salmonella Enteritidis (SE) colonization in liver, spleen and ovaries was significantly (P < 0.05) higher in FW+ hens compared to ALC+ and FF+ treatments groups. A 4-fold (log10 1.29) reduction in SE colonization for ALC+ hens compared to feed withdrawal hens (FW+) (log10 5.12) SE colonization was observed. Relative expression of hilA in all treatment groups was significantly (P < 0.05) higher in FW+ compared to FF+ and ALC+ groups. hilA expression in FW+ hens was 3.2-, 4.2-, and 1.9-fold higher for Days 6, 11 and 12 respectively, when compared with to ALC+ hens. These results suggest that Salmonella virulence in the gastrointestinal ecology of chickens could be impacted by a combination of low nutrients availability and pH shifts.

Higher risks of food-borne illness associated with increased consumption of poultry products make it necessary to identify potential sources of contamination and apply intervention strategies that will prevent or minimize the risk of contamination during processing. This study investigated the effects of chemical and natural decontamination treatments including sprayed application of acidified calcium sulfate (ACS) in combination with -polylysine (EPL), dry-rubbing kosher salt coating and molten paraffin wax dipping application on microbial populations of broiler carcasses and parts. Treatments were evaluated for their effectiveness in reducing the numbers of artificially inoculated rifampicin resistant Salmonella Typhimurium strain NVSL 95-1776 on the skin surface of bone-in chicken breasts. General model procedures were used to find statistical differences (P<0.05) and separation of means was done with least square means using SAS 9.1. Chemical interventions (ACS + EPL) caused an overall reduction of ~0.65 CFU/ml of rifampicin resistant Salmonella Typhimurium populations in inoculated chicken breasts. Similar reductions were observed in validation experiments in whole carcasses when compared to post-eviscerated control samples as well as post chilled treated samples when compared to post-chill controls. Kosher salt interventions caused ~1.15 CFU/ml log reductions in rifampicin resistant Salmonella Typhimurium loads. Significant differences (>2 log reductions) were also observed in validation trials in both pre- and post-chilled samples when compared to non-treated pre- and post-chilled controls. Only for psychrotrophic counts, chilled and post-chill interventions did not have a significant effect (P>0.05). The use of molten paraffin wax caused <0.51 CFU/ml log reductions on rifampicin resistant Salmonella Typhimurium in chicken breasts. In addition, drip loss on kosher treated samples was 53.8% lower than non-treated counterparts. However, kosher salt application caused a decrease in lightness (*L values) and yellowness (*b values) on treated carcasses when compared to controls, redness (*a values) were not significantly affected. Results indicate that the combined use of ACS and EPL at the stated conditions and the coating application of kosher salt on broiler carcasses significantly reduce pathogen contamination and microbial indicator loads, thus providing an alternative validated antimicrobial intervention for potential use by the poultry industry.

Autophagy, a cellular degradative pathway, plays a key role in protecting the cytosol from bacterial colonization, but the mechanisms of bacterial recognition by this pathway are unclear. Autophagy is also known to degrade cargo tagged by ubiquitinated proteins, including aggregates of misfolded proteins, and peroxisomes. Autophagy of ubiquitinated cargo requires p62, an adaptor protein with multiple protein-protein interaction domains. Previous studies demonstrated that the intracellular bacterial pathogen S. typhimurium is targeted by autophagy during infection of host cells. Here I show that p62 is recruited to S. typhimurium targeted by autophagy, and that the recruitment of p62 is associated with ubiquitinated proteins localized to the bacteria. Expression of p62 is required for efficient autophagy of bacteria, and restriction of their intracellular replication. My study demonstrates that the surveillance of misfolded proteins and bacteria occurs via a conserved pathway and reveals a novel function of p62 in innate immunity.

The enteropathogenic bacteria Salmonella are the main cause of food borne gastroenteritis worldwide. The activation of Toll-like receptor 4 (TLR4) by LPS triggers an immune response to counter infection. Signaling by TLR4 requires the adaptor proteins, TIRAP and TRAM. Recruitment and activation of these molecules is dependent on the membrane lipid, PIP2. The Salmonella effector, SigD, is a 4-phosphatase that depletes PIP2 from the host plasma membrane during invasion. Thus, we investigated if SigD could lead to the interruption of the TLR4 pathway. We observed that SigD expression caused the disappearance of TIRAP from the Salmonella containing vacuoles (SCVs) in HeLa cells. Furthermore, we demonstrated that SigD attenuates NF-κB activation, implicating SigD in the disruption of the MyD88 dependent pathway. In addition, the observed inhibition of PKCε phosphorylation suggests SigD may also block the other branch of the TLR4 signaling cascade, the MyD88 independent pathway.

The enteropathogenic bacteria Salmonella are the main cause of food borne gastroenteritis worldwide. The activation of Toll-like receptor 4 (TLR4) by LPS triggers an immune response to counter infection. Signaling by TLR4 requires the adaptor proteins, TIRAP and TRAM. Recruitment and activation of these molecules is dependent on the membrane lipid, PIP2. The Salmonella effector, SigD, is a 4-phosphatase that depletes PIP2 from the host plasma membrane during invasion. Thus, we investigated if SigD could lead to the interruption of the TLR4 pathway. We observed that SigD expression caused the disappearance of TIRAP from the Salmonella containing vacuoles (SCVs) in HeLa cells. Furthermore, we demonstrated that SigD attenuates NF-κB activation, implicating SigD in the disruption of the MyD88 dependent pathway. In addition, the observed inhibition of PKCε phosphorylation suggests SigD may also block the other branch of the TLR4 signaling cascade, the MyD88 independent pathway.

Autophagy, a cellular degradative pathway, plays a key role in protecting the cytosol from bacterial colonization, but the mechanisms of bacterial recognition by this pathway are unclear. Autophagy is also known to degrade cargo tagged by ubiquitinated proteins, including aggregates of misfolded proteins, and peroxisomes. Autophagy of ubiquitinated cargo requires p62, an adaptor protein with multiple protein-protein interaction domains. Previous studies demonstrated that the intracellular bacterial pathogen S. typhimurium is targeted by autophagy during infection of host cells. Here I show that p62 is recruited to S. typhimurium targeted by autophagy, and that the recruitment of p62 is associated with ubiquitinated proteins localized to the bacteria. Expression of p62 is required for efficient autophagy of bacteria, and restriction of their intracellular replication. My study demonstrates that the surveillance of misfolded proteins and bacteria occurs via a conserved pathway and reveals a novel function of p62 in innate immunity.

Lactobacillus plantarum is known to reduce the inflammatory response of macrophages in vitro and decrease inflammation in vivo during colitis. A predominance of M2, anti-inflammatory, macrophages correlates with a reduced severity of colitis. The purpose of this study was to determine if L. plantarum-conditioned media is able to produce an anti-inflammatory macrophage response during Salmonella-induced colitis while also reducing inflammation. Female C57BL/6 mice were infected with Salmonella after streptomycin pretreatment, then gavaged with L. plantarum-conditioned media (or a control) four hours prior to infection and twenty-four hours post-infection, they were sacrificed forty-eight hours post-infection. Samples of the intestines, blood, peritoneal exudate macrophages, spleen derived macrophages, and bone marrow-derived macrophages were collected. L. plantarum-conditioned media was found to limit inflammation in a dose related manner. Inflammation was measured by cecum histology, myeloperoxidase activity in the intestine, and monocyte chemoattractant protein-1 levels in the blood. IκB-α levels in the intestinal epithelium were measured by Western blot and degradation was reduced by L. plantarum-conditioned media treatment of Salmonella infected mice. Macrophages from L. plantarum-conditioned media treated Salmonella infected mice were found to have an M2 phenotype that was not found in any other treatment group. The phenotype markers arginase-1 and Ym-1 were found to be elevated in L. plantarum-conditioned media treated Salmonella infected mice by Western blot, while Src homology 2-containing inositol phosphatase-1 was reduced. Flow cytometry for the M2 markers CD206 and CD14 along with the M1 markers CD16 and CCR7 showed a similar M2 phenotype shift of macrophages from L. plantarum-conditioned media treated Salmonella infected mice. The cytokine profile of macrophages from L. plantarum-conditioned media treated Salmonella infected mice was anti-inflammatory with elevated IL-10 and decreased IL-6, IL-12, and TNF-α supporting the M2 phenotype. The protective effects of L. plantarum-conditioned media were found to be at least partially macrophage dependent in a macrophage transfer experiment. In vitro, L. plantarum-conditioned media was also found to produce M2 phenotype macrophages but have no effect on phagocytic or bactericidal function. In conclusion, L. plantarum-conditioned media provides a novel means of producing an anti-inflammatory immune response during Salmonella infection without compromising the host’s ability to combat infection. / Thesis (Master, Microbiology & Immunology) -- Queen's University, 2011-09-29 10:07:20.666

In these studies we evaluated specific environmental stimuli relevant to Salmonella virulence and physiology in the gastrointestinal tract of chickens. Results from Salmonella growth in steady state, glucose-limiting continuous culture (CC) indicated that the optimal growth condition was observed between 0.05 h-1 and 0.27 h-1 dilution rates (D). Cell protein concentrations increased proportionally with an increase in D at each steady state, but after D 0.27 h-1 there was a reduction in the cell protein concentrations as the D increased. Genetic responses generally indicated that the lowest D exhibited highest hilA relative expression. Relatively higher expression of hilA was largely observed at low D (low glucose) (0.0125 h-1, 0.025 h-1, 0.05 h-1). Salmonella incubated in CC at different pH shifts demonstrated that cell protein concentration, glucose utilization, Yield ATP and Acetate:Propionate ratios were influenced by an increase in pH (6.14 to 7.41). These parameters increased and decreased consistently with a corresponding increase and decrease in pH. Polymerase chain reaction-based denaturant gradient gel electrophoresis showed that the overall amplicon band patterns of microbial similarity have demonstrated that hens molted with Alfalfa (ALC+) diet were similar to the Full-Fed (FF+) treatment group. Additional, FF+ and ALC+ treatment groups exhibited a higher percentage similarity coefficient (>90%) than the feed deprived treatment group. Fermentation response from cecal inocula on feed substrates revealed that alfalfa based samples yielded consistently higher short chain fatty acid levels when compared to other feed substrates. Salmonella Enteritidis (SE) colonization in liver, spleen and ovaries was significantly (P < 0.05) higher in FW+ hens compared to ALC+ and FF+ treatments groups. A 4-fold (log10 1.29) reduction in SE colonization for ALC+ hens compared to feed withdrawal hens (FW+) (log10 5.12) SE colonization was observed. Relative expression of hilA in all treatment groups was significantly (P < 0.05) higher in FW+ compared to FF+ and ALC+ groups. hilA expression in FW+ hens was 3.2-, 4.2-, and 1.9-fold higher for Days 6, 11 and 12 respectively, when compared with to ALC+ hens. These results suggest that Salmonella virulence in the gastrointestinal ecology of chickens could be impacted by a combination of low nutrients availability and pH shifts.

Three studies were conducted to investigate the use of molecular techniques to identify Salmonella serotypes in poultry. In the first experiment, two polymerase chain reaction (PCR)-based techniques: denaturing gradient gel electrophoresis (DGGE) and polyacrylamide gel electrophoresis (PAGE) were used to analyze Salmonella serotype isolates from two turkey processing plants (A and B). Genotypic patterns of each isolate were compared with those of known serotypes identified by traditional antibody precipitation methods. In Plant A, four different Salmonella serotypes were identified: Derby, Hadar, Montevideo, and Senftenberg. In plant B, ten serotypes were identified: Agona, Anatum, Brandenburg, Derby, Hadar, Meleagridis, Montevideo, Reading, Senftenberg, and Typhimurium. S. Derby was predominant in Plant A (83%) while S. Typhimurium was the most common serotype recovered in Plant B (39%). Overall, DGGE was more sensitive than PAGE. Isolates of the same serotypes were all grouped together by DGGE, while PAGE failed to group all like serotypes. Next, DGGE and REP-PCR were used as genotyping tools for identifying Salmonella. Fifty-four Salmonella isolates from two turkey processing plants (A and B) were evaluated. The isolates were comprised of the following serotypes: Brandenburg, Derby, Hadar, and Typhimurium (n = 6, 21, 12, and 15, respectively). Both methods were very sensitive and detected diverse fingerprint profiles among the isolates. The data suggested that REP-PCR and DGGE are useful tools for identifying Salmonella serotypes in research trials of this type. The final trial was carried out to track Salmonella serotypes throughout an integrated poultry operation using DGGE. Four flocks were sampled from grow-out through processing. The data showed that there was correlation between Salmonella serotypes found on processed carcasses and during grow-out. In addition, the isolates were compared against 15 known serotypes in our data base and only S. Hadar from the data base matched the unknown Salmonella isolates. Overall, these studies demonstrate that PCR-based methods could be considered as an alternative to conventional methods of antibody-based serotyping. Molecular methods were found to be reliable, sensitive, inexpensive, reproducible, and less labor intensive than conventional methods.

Bacteria produce and respond to external stimuli using molecules termed autoinducers. Poultry meat contains inhibitors which interfere with AI-2 signaling. The primary objective of this work was to understand the effects of AI-2 on the virulence and growth of Salmonella Typhimurium, and if the introduction of AI-2 inhibiting compounds would influence these effects. Using DNA microarray analysis, expression of 1136 virulence-related genes in a Salmonella Typhimurium wild type and a luxS mutant strain, PJ002 (unable to produce AI-2), was monitored after exposure to treatments containing in vitro synthesized AI-2 (AI-2) and poultry meat (PM) inhibitors. Responding gene expression was unique in the presence of AI-2, with 23 genes differentially expressed at least 1.5-fold (p < 0.05). The combined AI-2 + PM treatment resulted in 22 genes being differentially expressed. Identification of inhibitory compounds was attempted using GC analysis on a hexane solvent extract obtained from a PM wash. From this analysis, chemical standards of linoleic, oleic, palmitic, and stearic acid were tested for inhibition using V. harveyi BB170. Combined fatty acids (FA) demonstrated inhibition against AI-2 at 60 % while 10-fold and 100-fold concentrations had inhibition of 84 % and 70 %, respectively. Growth of PJoo2, was studied using M-9 minimal medium with FA of varying concentrations, supplemented with either AI-2, or 1X phosphate buffered saline (PBS). Comparative analysis was done calculating the growth constants based on OD 600 values for each treatment. No significant difference in the combined FA + AI-2 treatments was observed against the AI-2 treatment. A significant increase in the growth rate constants of the AI-2 treatments was observed, however, compared to the PBS control (P = 0.01). Bacterial invasiveness, using a murine macrophage cell line, RAW 264.7, was also studied. AI-2 decreased cell invasiveness (P = 0.02), while the addition of combined FA improved invasiveness to normal levels. The results of these studies indicate that AI-2 does have an effect on the growth and virulence of Salmonella, but this is not uniformly modulated by the introduction of fatty acids, that inhibit AI-2 activity, suggesting that inhibition may be based on species specific transport systems.