Thesis (M.S.)--University of North Carolina at Wilmington, 2004. / Includes bibliographical references (leaves : 78-82).

Thesis (Ph. D.)--Rutgers University, 2008. / "Graduate Program in Ecology and Evolution." Includes bibliographical references (p. 127-138).

Thesis (M.R.P.)--University of Pennsylvania, 1977. / Includes bibliographical references (p. 132-137).

Thesis (M. S.)--Earth and Atmospheric Sciences, Georgia Institute of Technology, 2007. / Dr. Emanuele Di Lorenzo, Committee Member ; Dr. Ellery Ingall, Committee Member ; Dr. Martial Taillefert, Committee Chair.

There is a paucity of published information on fish utilization of salt marshes outside North America. This dissertation represents the first intensive examination of the ichthyofauna associated with salt marshes in southern Africa and examines the species composition, diversity, size structure, distribution and estuarine dependence of fishes that utilize salt marshes in the Kariega Estuary. The research was concentrated on Taylor's salt marsh, with comparative studies being conducted on other salt marshes and habitats within the marine dominated Kariega Estuary. The possible importance of salt marshes as feeding and refuge areas for fishes was examined, as was the role of salt marshes in the food web of the estuary. The fishes frequenting salt marshes in the Kariega Estuary were predominantly the juveniles of marine species, with Mugilidae being the dominant family. The ichthyofauna was distributed primarily in the intertidal creeks with very few specimens captured on the vegetated Spartina maritima and Sarcocomia perennis flats. The different reaches of the intertidal creek were characterised by distinct fish assemblages. The fish assemblages associated with the intertidal salt marsh creeks were significantly different from those found in the eelgrass beds, the other dominant intertidal habitat in the Kariega Estuary. The eelgrass beds were dominated by estuarine fish species and had a higher density and standing stock of fishes when compared to the salt marsh creeks. The diversity of fishes in the two habitats was however similar. The intertidal salt marsh creek ichthyofauna also differed significantly from that found in the main estuary channel. The creek ichthyofauna was dominated by 0+ juveniles while the main channel had many subadult and adult fishes. The channel habitat also had numerous large piscivorous fishes which were absent from the salt marsh creeks. The low number of piscivorous fishes, together with limited fish predation from other sources, may be the reason why salt marshes provide a refuge for juvenile fishes that frequent these habitats. Unlike previous studies on North American, Australian and European salt marshes, the dominant fish species that frequented Taylor's marsh were not recorded feeding extensively on the marsh, and those that did had a limited distribution. The role of fishes in the transfer of energy off the Kariega salt marshes is therefore likely to be minimal. A stable carbon isotope study on the dominant primary producers and consumers within the Kariega Estuary revealed that detritus originating from the high lying salt marsh plants Sarcocornia perennis and Chenolea diffusa was not utilized by fishes in the Kariega Estuary. Preliminary results indicated that the cord grass Spartina maritima may be an important energy source to the fishes in the Kariega Estuary, but further research is needed to confirm this.

A comprehensive field and laboratory study of nitrogen uptake in intertidal seaweeds was undertaken. Methods for measuring nitrogen uptake rates were evaluated. Short initial periods of rapid ammonium uptake were common in nitrogen deficient plants. The presence of ammonium inhibited nitrate uptake, but a certain degree of nitrogen starvation overcame this suppression. Laboratory studies with Porphyra perforata showed that nitrogen starved cultures maintained rapid initial ammonium uptake rates. The nitrate uptake system did not remain activated. Nitrogen starvation also resulted in a general decrease in soluble nitrogen content and a transient increase in nitrate reductase activity. The effectiveness of in vitro and in vivo nitrate reductase assays was investigated. The rate of nitrite production in the in vivo assay varied with incubation time. Therefore, the in vitro assay was used. Nitrate grown cultures of Porphyra perforata maintained high ammonium uptake rates. It was suggested that the rate of nitrate reduction was limiting the supply of nitrogen for further assimilation which may control ammonium uptake. Ammonium arid ammonium plus nitrate grown cultures had very low nitrogen uptake rates and nitrate reductase activities. Field studies with Gracilaria verrucosa confirmed that growth on ammonium inhibited nitrate uptake, nitrate accumulation and nitrate reductase activity. The presence of ammonium did not inhibit nitrate uptake rates in severely starved populations. All populations maintained high ammonium uptake rates suggesting that they were nitrogen limited at this time (August). Ammonium and nitrate uptake were saturable in the high intertidal G. verrucosa population but not in the low intertidal population. An investigation was made into the effect of nitrogen source and periodic exposure to air on growth, development and nitrogen uptake in Fucus distichus germlings. Gamete release, fertilization, germination and germling growth had no requirement for a specific form of nitrogen. Periodic exposure to air increased secondary rhizoid development. Ammonium and nitrate uptake rates of the germlings were much higher than for the mature thalli, but the affinity for nitrate was similar. The germlings showed saturable uptake kinetics but the mature thalli did not. The presence of ammonium inhibited nitrate uptake by the mature plants but not by the germlings. Mild desiccation enhanced nutrient uptake rates in several intertidal seaweeds. This uptake response occurred when growth was limited by that particular nutrient and when the thallus had been exposed to periodic desiccation for several weeks. The degree of enhancement, the percent desiccation producing maximum uptake rates and the tolerance to higher degrees of desiccation were related to intertidal location. This was shown to be an intraspecific as well as an interspecific adaptation. Transplant experiments with G. verrucosa showed that enhanced nutrient uptake rates after desiccation were related to intertidal height and not geographic location and that this response could be induced in approximately five weeks. It was suggested that this enhanced uptake response was an adaptation to nitrogen procurement and C/N homeostasis following periodic exposure when carbon was assimilated but when other nutrients were not available. / Science, Faculty of / Botany, Department of / Graduate

As sea levels continue to rise, the projected damage that will ensue presents a great challenge for conservation and management of coastal ecosystems in Florida. Since Juncus roemerianus is a common marsh plant throughout Florida with unique growing characteristics that make it a popular restoration plant, this study implemented a 20 week greenhouse split plot experiment to examine the effects of sea level rise on J. roemerianus and ultimately determine its tolerance ranges to salinity and inundation in a high nutrient environment. Overall, salinity level and the interaction effect of salinity level and water level had the greatest effects on measured growth parameters including average mature height, maximum height, density, basal area, root length, and biomass. An inverse relationship between increasing salinity and the measured growth variables was observed with the greatest growth and survivability in 0 ppt water, survivability and reduced growth in 20 ppt water, survivability and little growth in 30 ppt water, and nearly complete senesce in 40 ppt water. This was the first laboratory study to determine the effect of 40 ppt water on J. roemerianus. Elevated water levels resulted in higher growth variables in the 20 ppt, 30 ppt, and 40 ppt treatments while inundated water levels produced higher growth variables in the 0 ppt treatment despite previous research finding inundation to have completely adverse effects on J. roemerianus. It is likely that the high nutrient environment provided for this study is the cause for this anomaly. The results of this study have major implications for the future of coastal ecosystems that are dominated by stands of J. roemerianus in South Florida and can be used in conjunction with studies on bordering marsh plants to predict shifts in the ecosystems of Florida that are responding to sea level rise scenarios. / Includes bibliography. / Thesis(M.S.)--Florida Atlantic University, 2015 / FAU Electronic Theses and Dissertations Collection

Fixed nitrogen is important as a nutrient for organic matter formation and as an electron donor (nitrification) and acceptor (denitrification) for energy generation, but it is scarcely available in aquatic systems. Nitrification oxidizes ammonium to nitrite and nitrate. Denitrification uses these fixed species to form dinitrogen gas. The classic understanding of the nitrogen cycle requires dissolved oxygen for nitrification and assumes denitrification reduces nitrate to dinitrogen through various intermediates in anaerobic conditions. The global nitrogen budget is imbalanced with more marine denitrification measrued than previously estimated in the classic nitrogen cycle, suggesting alternative anaerobic nitrification and denitrification pathways exist. One alternative denitrification pathway is anammox, which directly oxidizes ammonium to dinitrogen with nitrite as the electron acceptor. Other alternative pathways for both nitrification and denitrification involve redox metals as catalysts. Manganese-catalyzed anaerobic nitrification and denitrification are thermodynamically favorable at neutral pH. However, experimental evidence for these processes is still lacking. This investigation seeks to uncover evidence of manganese-catalyzed nitrification and denitrification in saltmarsh sediments. Batch reactors with anaerobic sediment slurries from a saltmarsh in coastal Georgia were incubated in the presence and absence of colloidal manganese oxides and isotope-labeled ammonium and nitrate to trace dinitrogen formation. Results show that denitrification is more prominent in the manganese-treated reactors and that the classic denitrification pathway may not be substantial in shallow saltmarsh sediments. These data indicate that anammox and/or manganese-coupled denitrification are major contributors to the removal of fixed nitrogen. Ammonium removal in the manganese-treated reactors is accompanied by a high nitrite production compared to the nitrogen-only treatment, indicating manganese-coupled denitrification exists and/or anammox is promoted in the presence of manganese. Primary productivity is generally high in saltmarshes, but oxygen penetrates less than a few millimeters in the sediment. These observations suggest that oxygenic nitrification does not fuel denitrification below the sediment-water interface. The data show that manganese may play a role in the formation of nitrite and nitrate in oxygen-limited sediments.

Unclear predictions surrounding climate change, associated sea-level rise and potential impacts upon coastal environments have placed an emphasis on the importance of sea-level change. Past sea-level fluctuations have been measured using biological and geomorphological forms of evidence. One such biological proxy is salt-marsh foraminifera, which have been used as a high-resolution indicator of past sea-level change, based on the assumption that surface foraminiferal assemblages are similar in composition to buried fossil foraminifera. In South Africa, there is ongoing research seeking to produce high-resolution records of sealevel change, however foraminifera remain an underutilized source of proxy evidence. This research applies salt-marsh foraminifera as precise indicators of relative sea-level change at Kariega Estuary on the Eastern Cape coastline of South Africa. Distributions of modern foraminiferal assemblages were investigated, revealing vertical zonation across the intertidal zone. The foraminiferal and marsh vegetation zones were in part similar and overlapped to a certain extent, identifying three zones; high, low and tidal flats. This suggested foraminiferal distribution is a direct function of elevation relative to tidal fluctuation. A 94 cm core consisting of peat, sand and clay sediments was extracted from the salt marsh. A chronological framework for the core was based on five AMS radiocarbon age determinations of both bulk sediment and shell fragment samples placing the record within the last 1500 years Before Present (BP). The basal shell age was a clear outlier to all bulk sediment ages, possibly as a result of shell recrystallisation. The bulk sediment age determinations suggested two possible age reversals, potentially linked to sedimentary hiatus or contamination. These inconsistencies in the chronology were best viewed as separate age models. The core was analysed at a high resolution, whereby fossil foraminifera were extracted every 2 cm’s down the core. A transfer function was applied to calculate the former elevation at which each core sample once existed, to produce a relative sea-level reconstruction. The reconstruction was related to the age models to produce two possible sea-level curve scenarios. Reconstructed curves from both scenarios depict a 0.5 m (±0.16 m) sealevel highstand at 1500 cal years BP followed by a lowstand of -0.6 m (±0.03 m). Scenario One reached its lowest recorded sea-level between 600 cal years BP and 500 cal years BP and then fluctuated below present day levels. Scenario Two reached its lowest recorded sea-level around 1200 cal years BP, followed by low amplitude fluctuations and a relatively stable period from 100 cal years BP till the present day. The 1500 cal years BP highstand recorded for both scenarios correlates well with existing palaeoenvironmental literature from the southern African coastline. Chronological limitations associated with the remainder of the record hinder inter-comparison with previous studies. The outcomes of this research suggest that intertidal saltmarsh foraminifera demonstrate enormous potential for the high-resolution reconstruction of relative sealevel change in the South African context. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Thesis (M.S.)--University of North Carolina Wilmington, 2008. / Title from PDF title page (viewed September 22, 2008) Includes bibliographical references (p. 60-62)