Seagrass ecosystems are some of the most productive in the world and provide a variety of ecosystem services but are facing global decline chiefly due to anthropogenic disturbance. Mechanical disturbances to seagrass meadows from anchoring, propeller scars, and mooring scars result in losses or damage to both shoots and the underlying rhizome. I conducted a literature synthesis on the extent of, recovery from, and ecological impacts of these mechanical disturbances to seagrass meadows. The literature suggests that anchoring damage tends to be worst in deeper water where larger vessels anchor and can cause large (>100m2) loss per anchoring and recovery may take decades to over a century. Propeller damage is of largest concern in shallow (<2m) areas experiencing heavy boat traffic because propeller damage can only occur where the propeller can come close to the seagrass. Mooring damage is highly variable depending on the type of mooring used (>10m2 to >1000m2 scoured per mooring). Seagrass patches experiencing these mechanical disturbances have, in some studies, been found to have lower seagrass percent cover and shoot density than reference areas. This indicates scars can have "halos" of impacted seagrass meadow. Some seagrass systems cannot recover within a century (e.g. Posidonia oceanica meadows at the extent of their depth tolerance) while others recover annually from some disturbances (e.g., anchor scars <1m2). Systems face altered species composition when scars are preferentially recolonized by certain species and patterns of recovery are affected by altered biogeochemical conditions following disturbances. Additionally, mooring, anchoring, and propeller scarring frequently alter meadow density, cover, patch size, patch shape, patch isolation, edge area, and ratios of edge to interior meadow leading to changes in faunal community structure. Correlations between these disturbances and faunal abundances, densities, and richness in seagrass ecosystems are complex, vary temporally (sometimes on the scale of days), and may result in species showing positive, negative, or no responses to a wide range of disturbance regimes. To explore the connections between mooring scarring, the surrounding seagrass meadow condition and epifaunal community, in the second part of this thesis I measured 30 mooring scars to determine average scar size. To explore any potential "halo" effect around mooring scars for seagrass or epifauna and to seek any difference in epifaunal community between mooring and reference sites I also sampled paired sites at eight locations in Nantucket Harbor, Massachusetts three times each in the summer of 2015. Each location consisted of a meadow site actively experiencing mooring scarring and a reference site without moorings. My conservative sampling methods of the 30 sampled mooring scars found scars to average 21.1m2. Across my paired sites, seagrass was found to have lower cover and lower canopy height in mooring versus reference sites. Seagrass cover and canopy height were lower in the first few meters (typically 2-3m) surrounding each scar in comparison to paired reference quadrats indicating a "halo" effect of each scar. I did not detect a difference in epifaunal community composition or density per blade between mooring and reference sites; however, the relatively constant per blade concentration of epifauna combined with the differences in seagrass biomass between the mooring versus reference sites indicate an overall increase in the total amount of epifauna in areas with less disturbance. Epifaunal community composition was different and between locations and sampling dates indicating these factors are more important than proximity to mooring scarring in determining epifaunal abundance and richness. When considering scar area and the "halo" of each scar I estimate that at least 32ha (2%) of Nantucket Harbor was impacted by mooring scarring. Given that the estimates of seagrass do not include areas previously denuded of this plant and that my measurements were conservative, likely a larger portion of this harbor's potential seagrass habitat is impacted. Combined with the findings of loss due to these direct boat-related physical disturbances of seagrass meadows worldwide across regions, this halo effect is likely to also be found for moorings globally. I encourage management of the issue by employing and fine-tuning mooring methods (such as deploying moorings with anchor connections that do not drag on the sea floor) to minimize these unintentional but strong effects of mooring on the recipient habitat.

Seagrass meadows are highly productive, ecologically and economically valuable ecosystems. However, increased human activities along the coastal areas leading to processes such as eutrophication have resulted in the rapid loss and deterioration of seagrass ecosystems worldwide. This thesis focuses on the responses of seagrasses to increases in nutrients, subsequent increases in ephemeral algae, and changes in the physical-chemical properties of seawater induced by interaction with other marine biota. Both in situ and laboratory experiments conducted on the tropical seagrasses Cymodocea serrulata and Thalassia hemprichii revealed that increased concentrations of water column nutrients negatively affected seagrass photosynthesis by stimulating the growth of the epiphytic biomass on the seagrass leaves. Interaction between seagrasses and other marine organisms induced different responses in seagrass photosynthesis. Ulva intestinalis negatively affected the photosynthetic performance of the temperate seagrass Zostera marina both by reducing the light and by increasing the pH of the surrounding water. On the other hand, the coexistence of mussels Pinna muricata and seagrass Thalassia hemprichii enhanced the photosynthetic activity of the seagrass, but no effect on the mussels' calcification was recorded. This study demonstrates that seagrass productivity is affected by a multitude of indirect effects induced by nutrient over-enrichment, which act singly or in concert with each other. Understanding the responsive mechanisms involved is imperative to safeguard the ecosystem by providing knowledge and proposing measures to halt nutrient loading and to predict the future performance of seagrasses in response to increasing natural and human perturbations. / At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Papers 1, 3 and 4: Submitted. Paper 2: Manuscript. / Swedish Agency for Research Cooperation (Sida/SAREC) marine bilateral programme

This thesis examines a number of natural and anthropogenic disturbances within marine macrophyte habitats of the Caribbean. Understanding the effects of disturbance and the patterns associated with such dynamics is fundamental to ecological studies. Dynamics of interest included: interactions between populations; interactions between life history strategies; successional regimes; and alterations of community structure including loss of trophic heterogeneity and the possibility of "alternate" states. First I explored natural physical disturbance and succession. The dominance of macroalgae in the mid-shore, between areas of seagrass, challenged "classic" succession in such communities. I therefore proposed a model that included chronic "stress" by wave energy that could lead to a reversal in the climax state. Next, I investigated the importance of other grazers (i.e. trophic heterogeneity) in mediating the strength of trophic cascades (e.g. overgrazing). The enclosure experiments used suggested that different life history strategies respond differently to experimental conditions and that interference competition between specialist (conch) and generalist (urchins) grazers results in urchins switching to alternate resources and displaying lower condition. This dynamic may indirectly "buffer" the community against population expansions of urchins and overgrazing of diversity enhancing detritus. Under high nutrient enrichment, urchins maintained themselves, the trophic cascade and low diversity by switching to "expanded" autochthonous and "new" allochthonous resources. I continued to examine the effects of increasing nutrient enrichment, which correlated well with increasing human density, by examining eleven seagrass beds. The patterns of increasing consumer density and decreasing consumer diversity corresponded well to increasing enrichment and loss of autochthonous detritus. At high levels of enrichment, the community was dominated (> 90%) b

Includes bibliographical references (leaves 290-333). / xxiv, 333 leaves : ill. (chiefly col.) ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / Describes research into the nutritional value of aquatic plants as novel or non-conventional feedstuffs for ruminants in general and for sheep in particular, with especial reference to those which are available in high amount in southern Australia, such as the seagrass, Posidonia australis. / Thesis (Ph.D.)--University of Adelaide, Dept. of Animal Science, 1996?

Thesis (M.S.)--Mississippi State University. Department of Biological Sciences. / Bibliography: leaves 30-35. Also available on the World Wide Web.

Thesis (Ph.D.)--University of Wollongong, 2007. / Typescript. Includes bibliographical references: page 256-281.

Thesis (Ph.D.)--University of Wollongong, 2009. / Typescript. Includes bibliographical references: leaf 146-171.

Florida Bay is a shallow, subtropical lagoon located south of the Florida mainland. Bordered by the Florida Keys to the east and south, and shallow mud banks to the west, the Bay is protected from wave action and is considered a low energy environment. Utilizing a 100 year bathymetric dataset the geomorphology of Florida Bay was examined to see if significant changes were occurring despite the lack of strong wave action and water circulation. Changes in bathymetry were investigated from using a high-resolution bathymetric dataset from 1890 and 1990. Analysis was concentrated on the three main ecological habitats of Florida Bay: seagrass beds, mud banks and basins. This study of changes in geomorphology revealed that percent coverage of seagrass beds was positively correlated to amount of shallowing, basins larger than 27 km2 have gotten deeper and the mud banks of Florida Bay have been migrating southward at approximately 1 m/y. The significant changes to bathymetry within Florida Bay reveal that the environment is quite dynamic despite being sheltered from open waters. Most importantly, the presence of the 1890 bathymetric dataset allows for remote sensing techniques to be used to follow geological processes.

Plant roots host a wide spectrum of endophytic fungi ranging from parasites through neutralistic fungi to mutualistic mycorrhizal fungi. In most of terrestrial ecosystems, these groups of symbiotic fungi are well documented. However, much less is known about fungal endophytes of aquatic plants, especially the only group of submerged marine plants, seagrasses. We focused on roots of the seagrass species Posidonia oceanica which is a Mediterranean endemite. Its roots hosted an abundant presence of endophytic fungi. We examined the roots using optical and electron microscopy in order to study its morphology. We isolated the mycobionts and determined their taxonomic classification. A specific symbiosis of P. oceanica roots and dark coloured septate fungus has been recorded all over a vast area of the Mediterranean spreading from southern Spain to south Turkey. The fungus forms distinctive and typical structures: superficial hyphae occasionally forming hyphal sheaths or dense hyphal nets, intraradical hyphae colonizing extracellular space and, occasionally, primary cortex cells, and finally intracellular microsclerotia. The colonization pattern of the fungi resembles dark septate endophytes (DSE), group of fungi commonly found in roots of both terrestrial and freshwater plants. In our following studies, we...

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