Le lien entre la macrofaune et les communautés bactériennes benthiques a été déterminé selon deux approches : (1) une approche expérimentale à l’échelle de l’individu ciblée sur les effets de l’activité et de la bioturbation du polychète déposivore de surface Melinna palmata sur la distribution des communautés bactériennes des premiers millimètres de l’interface eau-sédiment ; (2) une approche in situ à l’échelle de la communauté de mise en corrélation des patrons spatiaux de distribution des communautés de macrofaune et de bactéries.Melinna palmata appartient à un nouveau groupe fonctionnel de bioturbation décrit pour la première fois, convoyeur de surface. L’utilisation de ce nouveau modèle biologique a permis de mettre en évidence que les activités de prospection et d’égestions modifient significativement la distribution des communautés bactériennes de la couche oxique de l’interface eau-sédiment. Ce lien est à la fois influencé par l’apport de matière organique de différentes qualités, et impacte la consommation et la minéralisation de cette matière organique.Le lien entre les patrons spatiaux de distribution des communautés de macrofaune et de bactéries a été étudié in situ, dans la vasière Ouest-Gironde. Les deux compartiments ont évolué le long d’un gradient avéré de teneur en matière organique et de taille des particules dans cette vasière.La corrélation des matrices biologiques n’a cependant pas été statistiquement significative et nécessite d’être approfondi. / The link between benthic macrofauna and bacterial communities was assessed with two different approaches: (1) an experimental approach at the individual scale, focused on the effects of behaviour and bioturbation of the deposit feeder polychaete Melinna palmata on the bacteria lcommunity distribution on the very sediment-water interface; (2) an in situ approach at the scale of the community, focused on the correlation between spatial distribution patterns of the two biological compartments. Melinna palmata belongs to a new functional group of bioturbation described for the first time: surface conveyor. Its use allowed determining that prospection and egestion induced a significant change of bacterial communities on the sediment-water interface. This link was influenced by organic matter enrichment while influencing its fate. In a second part, the link between spatial distribution patterns of the communities was assessed in situ in the West-Gironde mud patch. Both macrofauna and bacteria changed along a gradient of organic matter quantity and quality and of particles size described in this system. However, the correlation between matrices was not statistically significant and needs to be more developed.

Os sedimentos marinhos são receptores finais de vários compostos da coluna de água, possuindo uma participação ativa nos ciclos biogeoquímicos. Comunidades microbianas possuem um papel crucial nestes ciclos, sendo responsáveis por grande parte da remineralização da matéria orgânica em sedimentos superficiais. Foram realizados dois experimentos com simulações de processos oceanográficos em microcosmos: Enriquecimento Orgânico, testando a diferença entre a chegada de fitoflagelados e diatomáceas no sedimento e Ressuspensão, simulando a passagem de frente fria. Foram analisados os compostos referentes à qualidade e quantidade da matéria orgânica sedimentar, assim como o fluxo de nutrientes da interface água-sedimento. No Experimento Enriquecimento, as diferentes algas causaram respostas distintas nos processos de degradação da matéria orgânica, aumentando a qualidade e o metabolismo das comunidades presentes, além de modificar os fluxos de nutrientes, sendo notada uma resposta mais rápida nos mecanismos de degradação devido à adição do fitoflagelados. No Experimento Ressuspensão, o distúrbio físico ocasionou uma resposta imediata e significativa na liberação dos nutrientes do sedimento para a interface água-sedimento e alterações nas concentrações de ácidos graxos, principalmente nos dois primeiros dias após a simulação. Logo, os diferentes eventos oceanográficos simulados comprovaram sua influência frente aos processos biogeoquímicos, principalmente na disponibilidade de ácidos graxos e na liberação de nutrientes para a água sobrejacente / Marine sediments are the final receivers of many organic compounds from the water column, playing an important role in biogeochemical cycles. Microbial communities are important to these cycles as they remineralize organic matter within surface sediments. Microcosm experiments were conducted to simulate two important oceanographic processes: Organic Enrichment, to test differences between sinking patterns of phytoflagellates and diatoms and Resuspension, simulating the passage of a cold front. The quality and amount of the organic matter was assessed, as well as the nutrient flow between the sediment-water interface. In the Enrichment Experiment, distinctive responses in the degradation processes were noted between treatments where the addition of phytoflagellates increased the quality of the organic matter, caused faster metabolism communities present in the sediment, and modify the patterns of nutrient flux rates. In the Resuspension Experiment, the physical disturbance caused an immediate and significant release of nutrients from the sediment to the sediment-water interface and changed the in the concentrations of fatty acid content most notably during two days after the resuspension event. Thus, the different simulated oceanographic events influenced biogeochemical processes, particularly in the availability of fatty acids and the release of nutrients to the overlying water

Os sedimentos marinhos são receptores finais de vários compostos da coluna de água, possuindo uma participação ativa nos ciclos biogeoquímicos. Comunidades microbianas possuem um papel crucial nestes ciclos, sendo responsáveis por grande parte da remineralização da matéria orgânica em sedimentos superficiais. Foram realizados dois experimentos com simulações de processos oceanográficos em microcosmos: Enriquecimento Orgânico, testando a diferença entre a chegada de fitoflagelados e diatomáceas no sedimento e Ressuspensão, simulando a passagem de frente fria. Foram analisados os compostos referentes à qualidade e quantidade da matéria orgânica sedimentar, assim como o fluxo de nutrientes da interface água-sedimento. No Experimento Enriquecimento, as diferentes algas causaram respostas distintas nos processos de degradação da matéria orgânica, aumentando a qualidade e o metabolismo das comunidades presentes, além de modificar os fluxos de nutrientes, sendo notada uma resposta mais rápida nos mecanismos de degradação devido à adição do fitoflagelados. No Experimento Ressuspensão, o distúrbio físico ocasionou uma resposta imediata e significativa na liberação dos nutrientes do sedimento para a interface água-sedimento e alterações nas concentrações de ácidos graxos, principalmente nos dois primeiros dias após a simulação. Logo, os diferentes eventos oceanográficos simulados comprovaram sua influência frente aos processos biogeoquímicos, principalmente na disponibilidade de ácidos graxos e na liberação de nutrientes para a água sobrejacente / Marine sediments are the final receivers of many organic compounds from the water column, playing an important role in biogeochemical cycles. Microbial communities are important to these cycles as they remineralize organic matter within surface sediments. Microcosm experiments were conducted to simulate two important oceanographic processes: Organic Enrichment, to test differences between sinking patterns of phytoflagellates and diatoms and Resuspension, simulating the passage of a cold front. The quality and amount of the organic matter was assessed, as well as the nutrient flow between the sediment-water interface. In the Enrichment Experiment, distinctive responses in the degradation processes were noted between treatments where the addition of phytoflagellates increased the quality of the organic matter, caused faster metabolism communities present in the sediment, and modify the patterns of nutrient flux rates. In the Resuspension Experiment, the physical disturbance caused an immediate and significant release of nutrients from the sediment to the sediment-water interface and changed the in the concentrations of fatty acid content most notably during two days after the resuspension event. Thus, the different simulated oceanographic events influenced biogeochemical processes, particularly in the availability of fatty acids and the release of nutrients to the overlying water

L’estuaire de Seine est un géosystème macrotidal présentant un hydrodynamisme fort lié à la combinaison des courants fluviatiles et tidaux. Ces phénomènes entrainent l’érosion et le dépôt des sédiments au niveau des vasières intertidales. Au sein des vasières, l’interface eau-sédiment est une zone importante car c’est à cet endroit que se réalise les échanges en nutriment (C, N, P) entre le sédiment et la colonne d’eau. L’objectif de cette thèse est d’évaluer l’impact des forçages hydrodynamiques, physiques et thermiques sur les flux de nutriment à cette interface en utilisant une double approche expérimentale de terrain et de modélisation. Dans ce but, une vasière d’embouchure et une vasière amont de l’estuaire sont échantillonnées au cours des mois de mars-avril 2017. Des échantillonneurs passifs ainsi que des instruments de mesure en continu sont implantés dans le sédiment. Les données obtenues sont ensuite intégrées en entrée dans des modèles de diffusion et d’advection afin d’estimer la contribution relative de la diffusion et des mouvements d’eau dans les flux de nutriment. Les résultats expérimentaux obtenus montrent les différences de fonctionnement hydrodynamiques des deux vasières du fait de leur localisation différente dans l’estuaire. Ils mettent aussi en avant l’hétérogénéité des sédiments des deux vasières d’un point de vue hydrodynamique, physique et biogéochimique. Enfin ils permettent de comprendre la dynamique de la température du sédiment en lien avec le cycle diurne et la marée. La partie modélisation de cette étude est divisée en deux parties distinctes : l’étude de la diffusion et de l’advection à l’interface eau-sédiment. La diffusion est étudiée de façon horizontale et verticale. Le facteur prépondérant de la dynamique de diffusion est la température, celle-ci est modulée par plusieurs paramètres. Les flux potentiels de diffusion sont aussi calculés pour les deux vasières. L’étude de l’advection au sein du sédiment est réalisée à l’aide de deux modèles : le modèle VFLUX et le modèle 1DTempPro. Les vitesses d’écoulement de l’eau interstitielle sont fonction du phasage-déphasage du cycle diurne avec celui de la marée. Ces résultats mettent en avant le rôle prédominant de l’advection par rapport à la diffusion dans la dynamique des flux de nutriment et permettent de proposer un modèle conceptuel des échanges thermiques et de l’advection-diffusion au sein des vasières intertidales / The Seine estuary is a macrotidal geosystem with a strong hydrodynamism linked to the combination of fluvial and tidal currents. These phenomena cause erosion and sediment deposition on the intertidal mudflats. Within the mudflats, the water-sediment interface is an important area because it is there that nutrient exchanges (C, N, P) take place between the sediment and the water column. The objective of this thesis is to evaluate the impact of hydrodynamic, physical and thermal forcing on nutrient fluxes at this interface using a dual experimental field and modelling approach. For this purpose, a mudflat situated at the mouth of the river and an upstream mudflat of the estuary are sampled during the months of March-April 2017. Passive samplers and continuous measuring instruments are implanted in the sediment. The resulting data are then integrated into diffusion and advection models to estimate the relative contribution of water diffusion and movement in nutrient fluxes.The experimental results show differences in the hydrodynamic functioning of the two mudflats due to their different location in the estuary. They also highlight the heterogeneity of the sediments of the two mudflats from the hydrodynamic, physical and biogeochemical points of view. Finally, they allow us to understand the dynamics of sediment temperature in relation to the diurnal cycle and the tide. The modelling part of this study is divided into two distinct parts: the study of diffusion and advection at the water-sediment interface. The diffusion is studied in a horizontal and vertical direction. The main factor of diffusion dynamics is temperature, which is modulated by several parameters. The potential diffusion fluxes are also calculated for the two mudflats. The study of advection within the sediment is performed using two models: the VFLUX model and the 1DTempPro model. Interstitial water flow velocities are a function of the phase-diphase shift of the diurnal cycle with that of the tide. These results highlight the predominant role of advection compared to diffusion in the dynamics of nutrient flows and allow to propose a conceptual model of heat exchange and advection-diffusion within intertidal mudflats.