Thesis (M.A. Agricultural Management (Plant Production)) -- University of Limpopo, 2015 / Tomato (Solanum lycopersicum L.) production had been ranked as the most important commodity in terms of job and wealth creation within the auspices of the National Development Plan (NDP) framework in Limpopo Province. However, soil-borne diseases including plant-parasitic nematodes preclude the successful monoculturing of this commodity and therefore inducing instability in job creation. Generally, after growing a tomato crop for one season in commercial tomato-production systems, the land is being fallowed for 3-5 years under natural grasses. Attempts are being initiated to ensure that during the 3-5 years the land be occupied by an economic alternative crop in order to level off job instability as broadly articulated in the NDP framework. The production of sweet stem sorghum (Sorghum bicolor L.) for ethanol production during the 3-5 years fallowing period could potentially be attractive to commercial tomato-producing famers. Preliminary agronomic evaluations demonstrated that sweet stem sorghum var. ndendane-X1 had attributes to fulfil the identified need. However, the degree of nematode resistance of the variety to Meloidogyne incognita race 2 and M. javanica, which are dominant in Limpopo Province, along with the compatibility of var. ndendane-X1 to phytonematicides used in tomato production had not been documented. The objectives of the study were, therefore, to determine whether sweet stem sorghum var. ndendane-X1: (1) had any degree of nematode resistance to M. incognita race 2 under both greenhouse and microplot conditions, (2) had any degree of nematode resistance to M. javanica under greenhouse conditions, and (3) would be compatible with phytonematicides used in suppression of population densities of xiv Meloidogyne species in tomato production under field conditions. In the greenhouse trials, seeds were sown in 20-cm-diameter plastic pots and each seedling inoculated with 0, 600, 1 000, 1 400, 1 800 and 2 200 eggs and second-stage juveniles (J2s) of M. incognita race 2 or M. javanica. Treatments were arranged in a randomised complete block design (RCBD), with 10 replicates (n = 60). In the microplot trial, seeds were sown in 30-cm-diameter plastic pots and buried 75% deep in a 0.30-m intra-row and 0.25-m inter-row spacing. Treatments, namely, 0, 200, 600, 1 000, 1 400, 1 800 and 2 200 J2s of M. incognita race 2 were arranged in RCBD, with 14 replications (n = 98). In a Meloidogyne-infested field trial, seeds were sown at 0.2-m inter-row and 0.3-m intra-row spacing, with treatments 0, 2, 4, 6, 8 and 10 g nemafric-BG phytonematicide/plant, arranged in RCBD, with 13 replications (n = 78). The degree of nematode resistance was measured using host-status and host-sensitivity, which provide information on reproduction of the target nematode and plant damage due to nematode infection, respectively. Nematode reproduction was measured through the reproductive factor (RF), which is a proportion of final nematode population density (Pf) to initial nematode population density (Pi), summarised as RF = Pf/Pi. In all nematode resistance trials, RF was equivalent to zero, which implied that var. ndendane-X1 was a non-host to both M. incognita race 2 and M. javanica. Additionally, in both greenhouse and microplot trials, sweet stem sorghum var. ndendane-X1 did not suffer any significant damage due to infection by Meloidogyne species. Using nematode-plant relation concepts, sweet stem sorghum var. ndendane-X1 was resistant to M. incognita race 2 and M. javanica under greenhouse and microplot conditions. Under field conditions, nemafric-BG phytonematicide reduced eggs and J2s of Meloidogyne species in root and soil samples xv by 76-85% and 24-65%, respectively, without nematode effect on plant growth, suggesting that nemafric-BG could be integrated with nematode resistance in var. ndendane-X1 to manage nematode population densities. In conclusion, pilot projects where sweet stem sorghum var. ndendane-X1 could be used during the 3-5 years fallowing period in a tomato-sweet stem sorghum crop rotation system should be established to assess: (i) the economics of the proposed cropping system, (ii) the effect of the cropping system on soil-borne diseases, including plant-parasitic nematodes, and (iii) the effect of the cropping system on soil health.

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Differences in pea (Pisum sativum L.) and chickpea (Cicer arietinum L.) microbial compatibility and/ or their associated farming practices may influence root fungi of the following crop and affect the yield. The main objective of this research was to explain the difference in durum wheat (Triticum turgidum L.) yield the year after pea and chickpea crops through changes in the functional diversity of wheat root fungi. The effect of fungicides used on chickpea on the root fungi of a following durum wheat crop was studied using plate culture and pyrosequencing. Pyrosequencing detected more Fusarium spp. in the roots of durum wheat after fungicide-treated chickpea than in non-fungicide treated chickpea. Plate culture revealed that the functional groups of fungi responded differently to fungicide use in the field but the effect on total community was non-significant. Highly virulent pathogens were not affected, but antagonists were suppressed. More fungal antagonists were detected after the chickpea CDC Luna than CDC Vanguard. Fungal species responded differently to the use of fungicides in vitro, but the aggregate inhibition effect on antagonists and highly virulent pathogens was similar. The effect of chickpea vs. pea previous crop and different chickpea termination times on root fungi of a following durum wheat crop was studied. The abundance of Fusarium spp. increased after cultivation of both cultivars of chickpea as compared to pea according to pyrosequencing and was negatively correlated with durum yield. Plate culture analysis revealed that fungal antagonists were more prevalent after pea than both cultivars of chickpea and chickpea CDC Vanguard increased the abundance of highly virulent pathogens. The abundance of highly virulent pathogens in durum wheat roots was negatively correlated to durum yield. Early termination of chickpea did not change the community of culturable fungi in the roots of a following durum crop. It is noteworthy that Fusarium redolens was identified for the first time in Saskatchewan and its pathogenicity was confirmed on durum wheat, pea and chickpea. The classical method of root disease diagnostics in cereals is based on the examination of the subcrown internode. I evaluated the method by comparing the fungal communities associated with different subterranean organs of durum wheat. The fungal community of the subcrown internode was different from that of roots and crown, suggesting cautious use of this method.