Rice (Oryza sativa L.) is the principal crop of North Eastern Tanzania but production is threatened by salt affected soils, drought and the use of un-adapted cultivars, among other constraints. Little research and hardly any breeding have been done on the aspects of salt tolerance of the crop in sub Saharan Africa, leading to low yields and low production in rice irrigation schemes under arid and semi arid conditions. A project was therefore implemented in North Eastern Tanzania during 2007-2010 seasons to investigate the possible breeding contributions to enhance productivity and production of the crop in salt affected areas. The objective of this study was to: a) determine farmers’ perceptions on both salt problems and their effects on rice crop productivity as well as establishing farmers’ needs and preferences for rice varieties in the targeted irrigated environment; b) determine the extent of salt problem in both soil and irrigation water in the available rice irrigation schemes in the North-eastern Tanzania; c) identify the major physiological mechanisms associated with salt tolerance in farmer-preferred native varieties and landraces; and d) determine the mode of inheritance of salt tolerance in rice. Participatory rural appraisal was conducted in Mkomazi and Mombo villages in Tanga region with the aim of understanding characteristics of rice–based farm economy, farmers’ perception of agriculture constraints and variety preferences in salt affected areas of North-eastern Tanzania. This was followed by a preliminary study to understand soil characteristics in relation to salt problems and its extent in selected nine rice irrigation schemes. Studies was established under controlled conditions to assess the salt tolerance of some rice farmers preferred rice cultivar and evaluate the putative traits in the rice materials that contribute to the performance of a genotype under saline and saline-sodic condition. Thereafter, genetic mechanism governing various morpho-physiological parameters in selected Tanzania local farmers’ preferred varieties and salt tolerant donors under saline and sodic soil conditions of North Eastern Tanzania were determined. A participatory rural appraisal (PRA) established that rice was a major staple food and cash crop and rice farming was a major economic activity in the area. However, soil degradation through increased salt affected soils was identified as the major factor responsible for irrigated rice yield decline. Major varieties grown are salt sensitive, and salt tolerant varieties were not available. The study also revealed that most farmers’ preferred traits of rice cultivars were high yield potential, aroma, early maturing, medium plant stature, tolerance to salt and drought. Improvement of these characters in new salt tolerant varieties would increase food production in fields with low or zero productivity and the well-being of the poor farmers. A soil characterisation study indicated the magnitude of the problem, whereby, seven out of nine studied irrigation schemes were affected and sodic and saline-sodic conditions were the dominant types of soils. Poor irrigation canals and management of irrigation water were the driving factors that contributed to salts accumulation causing a decline in productivity. Experiments were established under controlled environments to evaluate the tolerance of 10 and 11 rice genotypes under saline and saline-sodic stresses, respectively. Significant variation between genotype and significant interactions between genotype and salt treatment (P<0.001) were observed for all characters studied. Genotype Pokkalli, IR 67076-2B-21-2 and IR 56 showed superior performance under saline, whereas CSR 27, Nerica 2 and IR 56 had superior performance under saline-sodic. The study therefore established that, all the local farmer preferred cultivars except IR 56 performed poorly under both salt stress environments. High seedling vigour, less leaf injury, less Na+ and high K+ accumulation in leaves, low Na+/K+ ratio of ion uptake, high spikelet fertility, increased grains per panicle and 1000 grain weight were considered as the desirable characteristics therefore can be used in developing lines for salt tolerance for production under saline and saline - sodic conditions. Gene action and combining ability studies for nine morpho-physiological traits were studied under normal, saline and sodic soil environments. The rice populations were generated through 7 x 7 full diallel crosses and advanced to F2. The parents comprised two donors for saline tolerance, one donor for sodic tolerance and four salt sensitive farmers preferred varieties. Both additive and non-additive gene effects were important in the inheritance of the characters studied in all soil environments. However, additive effects were more important for the number of tillers, shoot Na+, Na+/K+ ratio and plant height. Both additive and non-additive gene effects were important for spikelet fertility, days to 50% flowering, number of grains per panicle, 1000 grain weight, and grain yield; however the magnitude of additive gene effect was higher than non additive effects. Amongst the parental lines, the best general combiners for yield along with other traits were TXD 306 and IR 67076-2B-21-2 under normal non-saline/sodic condition; IR 56, Pokalli and TXD 306 under saline condition and CSR 27 and TXD 306 under sodic conditions. The overall results from this study indicated the possibility of improving both yield and salt tolerance from this set of germplasm; therefore contributing to increasing rice yields in the marginal salt affected environments. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

[Truncated abstract] In southern Australian farming systems the replacement of deep-rooted perennial native vegetation with shallow-rooted annual crops and pastures has resulted in rising groundwater tables and an increased incidence of dryland salinity. It has been suggested that to address this issue by restoring hydrological balance, large areas of agricultural land need to be vegetated with perennial plants. One of the most agriculturally productive ways to do this is to introduce perennial pastures, both into upslope groundwater

Title page, table of contents and abstract only. The complete thesis in print form is available from the University of Adelaide Library. / Transient salinity in soils is characterised by high concentrations of salts in the subsoil. Durum wheat (Triticum turgidum L. Var. durum) is less tolerant of transient salinity than locally developed bread wheat (Triticum aestivum) varieties, and this results in reliable durum production being restricted to relatively unaffected soils. Field trials were conducted to assess the relative impact of transient salinity, boron toxicity and bicarbonate on crop production and highlighted the importance of combining tolerance to all three subsoil constraints into varieties intended for widespread adoption; and if the area of durum production is to be expanded. The Na exclusion locus from the landrace Na49 was found to improve the adaptation of durum to sites affected by transient salinity and is now being intogressed into a wide range of breeding material. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1152134 / Thesis (Ph.D.) -- University of Adelaide, School of Agriculture and Wine, 2005

Puccinellia (puccinellia ciliata) and tall wheatgrass (Thinopyrum ponticum) often show ecological zonation in saline landscapes, with puccinellia occurring in less elevated more saline/waterlogged locations, and tall wheatgrass occurring in more elevated less saline/waterlogged locations. The aims of this study were to: (a) characterize the observed ecological zonation at a field site, (b) quantify the effects of variables likely to explain growth differences of the two plants in glasshouse experiments, and (c) identify and compare anatomical and physiological mechanisms that explain these zonation patterns. At an experiment in the field near Kojonup (0522824E, 6244579N), puccinellia was found to colonise the lower more severely salinised and waterlogged zones of the landscape, with tall wheatgrass occupying the higher less affected zones. These differences in zonation were clearly associated with variance in soil salinity and water-table depth. Glasshouse experiments in soil revealed that low pH values, low calcium concentrations and variation in salinity alone did not explain the ecological zonation observed in the field. However, there was a substantial difference in the responses of the two plant species to waterlogging in combination with salinity. Puccinellia grew better under saline waterlogged conditions than tall wheatgrass, which was associated with better regulation of Na+ and K+ under saline/waterlogged conditions than in tall wheatgrass. Under non-saline conditions, waterlogging (hypoxia) decreased shoot weights in puccinellia by 15% and in tall wheatgrass by 20%. Similar growth results were obtained in nutrient solution culture, where waterlogging was simulated by lowering the oxygen in solutions through bubbling with N2 gas. Under saline hypoxic conditions, puccinellia, compared to tall wheatgrass, showed increased growth and maintenance of selectivity of K+ over Na+ across adventitious roots. Solution experiments revealed adaptive traits responsible for conveying better growth and ion maintenance present in puccinellia, but not tall wheatgrass, such as inducement of a barrier to radial oxygen loss in the basal regions of adventitious roots (not previously reported in the literature for puccinellia), formation of root aerenchyma and packing of cortical cells and suberin deposition in hypodermal and endodermal root cell layers. These results should assist in targeting pasture species, and predicting their growth response, in saline and waterlogged landscapes. Further work on examining the genetic material of puccinellia is warranted in order to identify genes that could be transferred into crop plants to convey salt and waterlogging tolerance.

The Kat River is an agricultural catchment that drains salt rich geology. Potential salinity impacts on ecological condition of the river were investigated. Monthly salt concentrations and flow discharges were monitored at ten sites along the Kat River below the Kat Dam. Monthly salt loads were computed to relate salinity to land use and ionic data used to assess the toxicity of major salts using the TIMS model. Concentration duration curves for sodium chloride were derived from flow concentration relationships, representing sodium chloride concentrations to which the aquatic ecosystem had been exposed. The ecological condition was assessed at nineteen sites using SASS5 biotic index over four seasons. Finally, the modelled instream salt concentrations and bioasessments were evaluated in terms of the modelled level of species protection afforded at different salt concentrations. Species Sensitivity Distributions (SSDs) were used for this exercise. There was a general downstream increase in salinity with the minimum concentrations recorded at the Fairbain tributary (84 mg/L) and maximum levels at the sewage outfall in Fort Beaufort (1222 mg/L). There was evidence that citrus irrigation upstream of Fort Beaufort increased salinisation. Sodium chloride, and to a lesser extent magnesium sulphate, were the dominant salts in the Kat River catchment, with the latter being more toxic. However these had little or no impact on the aquatic ecosystem. Flow-derived sodium chloride concentrations showed that both the Balfour and Blinkwater tributaries were in a fair/ poor condition. However with regard to ecological condition, it was demonstrated that the river is generally in a good state except for the Blinkwater River and the lower catchment. Degraded habitat condition at the Blinkwater was responsible for poor ecological condition. Integrating SSD derived classes, sodium chloride classes and ecological condition indicated that sodium chloride is a driver of ecological condition at the sewage treatment works and the subsequent site (only two of nineteen biomonitoring sites).