Doctor of Philosophy / Department of Chemistry / Ryszard J. Jankowiak / This dissertation reports the low temperature frequency domain spectroscopic study of three different natural pigment protein complexes and one artificial antenna system. The main focus of this work is to better understand electronic structure, excitation energy transfer (EET), and electron transfer (ET) dynamics in these systems that could have impact on achieving higher efficiency in future artificial solar cells. In the first part of this dissertation, electronic structure and EET pathways in isolated intact CP43 prime protein complex, which is isolated from Cyanobacterium synechocystis PCC 6803 grown under iron stressed conditions, are investigated using low-temperature absorption, fluorescence, fluorescence excitation, and hole-burning (HB) spectroscopies. This work suggests that, in analogy to the CP43 complex of PSII core, CP43 prime possesses two quasi-degenerate low energy states, A prime and B prime. The various low-temperature optical spectra are fitted considering an uncorrelated EET model. This work suggests that for optimal energy transfer from CP43 prime to PSI, the A prime and B prime state chlorophylls belonging to each CP43 prime should face towards the PSI core. The second part of dissertation reports the photochemical HB study on novel Zinc bacterial reaction center (Zn-RC) from Rhodobacter sphaeroides and its β-mutant (Zn-β-RC). This study shows that ET in the two samples is similar; however, the quantum efficiency of charge separation in the mutant decreases by 60 %. This finding suggests that the coordination state of the HA site zinc bacteriochlorophyll does not tune the active branch ET. Simultaneous fits of various optical spectra using experimentally determined inhomogeneity provides more reliable electron phonon coupling parameters for the P870 state of both RC samples. In the last part of this dissertation, EET in a novel artificial antenna system (ethynyl linked chlorophyll trefoil, ChlT1) is investigated. EET time in ChlT1 is ~2 ps. ChlT1 in MTHF/ethanol glass forms four different types of aggregates, A1-A4. The EET time in A1 and A2 type aggregates slows down only by a factor of 5 and 7, respectively. This study suggests that ChlT1 and its aggregates can be used as efficient antenna systems in designing organic solar cells.

Doctor of Philosophy / Chemistry / Ryszard J. Jankowiak / The structure-function relationships of natural pigment–protein complexes are of great interest, as the electronic properties of the pigments are tuned by the protein environment to achieve high quantum yields and photon utilization. Determination of electronic structure and exciton dynamics in protein complexes is complicated by static disorder and uncertainties in the properties of system-bath coupling. The latter is described by the phonon profile (or spectral density), whose shape can only be reliably measured experimentally for the lowest energy state. Low-temperature, laser-based spectroscopies are applied towards model pigment–protein complexes, i.e., the Fenna-Matthews-Olson (FMO) and water-soluble chlorophyll-binding (WSCP) complexes, in order to study system-bath coupling and energy transfer pathways. Site-selective techniques, e.g., hole burning (HB) and fluorescence line narrowing, are utilized to overcome static disorder and reveal details on homogeneous broadening. In addition, excitonic calculations with non-Markovian lineshapes provide information on electronic structure and exciton dynamics. A new lognormal functional form of the spectral density is recommended which appropriately defines electron-phonon parameters, i.e., Huang-Rhys factor and reorganization energy. Absorbance and fluorescence spectral shifts and HB spectra reveal that samples of FMO may contain a subpopulation of destabilized proteins with modified HB efficiencies. Simulations of spectra corresponding to intact proteins indicate that the entire trimer has to be taken into account in order to properly describe fluorescence and HB spectra. The redshifted fluorescence spectrum of WSCP is described by uncorrelated energy transfer as opposed to previous models of excited state protein relaxation. Also, based on nonconservative HB spectra measured for WSCP, a mechanism of electron transfer between chlorophylls and aromatic amino acids is proposed.

Dans de nombreux systèmes de traitement de l'information, le signal est numérisé, traité informatiquement, puis reconverti dans le domaine analogique. La faible bande passante de ces étapes de conversion numérique/analogique limite considérablement le débit d'informations traitées. Une solution purement analogique améliorerait donc considérablement le temps de traitement et la bande passante. Notre approche consiste à transférer le signal RF à traiter sur une porteuse optique puis à procéder à son traitement dans le domaine optique. L'étape de traitement est assurée par la traversée d'un cristal dopé en ions terres rares convenablement "programmé". Cette étape de programmation consiste à graver dans le profil d'absorption du cristal une fonction caractéristique de l'opération de traitement du signal à réaliser. Deux opérations ont ainsi été implémentées : 1) le renversement temporel de signaux RF : c'est l'opération consistant à générer analogiquement le signal renversé temporellement s(−t) d'un signal incident s(t). La fonction à graver dans le profil d'un cristal d'Er:YSO est alors un réseau spectral de pas variable. 2) l'analyse spectrale large bande instantanée : c'est l'opération permettant d'accéder au contenu spectral d'un signal. On impose au protocole de fournir instantanément le spectre d'un signal large bande. La fonction à graver dans le profil d'un cristal de Tm:YAG est alors un réseau spectro-spatial de pas variable. / Many signal processing devices rely on the digitalization of the incoming signal. After being processed by a computer, the signal needs to be converted back to its original analog form. Due to the limited bandwidth of analog-to-digital and digital-to-analog stages, the data flow rate is significantly limited. A purely analog solution would then significantly improve the processing time and bandwidth. In our approach, we first transfer the incoming RF signal on an optical carrier, allowing us to process it in the optical domain. For the processing stage, we propose to engrave the absorption profile of a rare earth ion-doped crystal with different shapes (each shape is specific to one processing operation). In this work, two operations are implemented: 1) time reversal of RF signals: we analogically generate the time reversed replica s(−t) of an incoming signal s(t). For this purpose, the shape to be engraved in the absorption profile of a Er:YSO crystal is a non-periodic spectral grating. 2) instantanous broadband spectral analysis: we want to instantaneously access the spectral components of a broadband signal. For this purpose, the shape to be engraved in the absorption profile of a Tm:YAG crystal is a spectro-spatial grating with a variable period.

Harvesting only 4 % of light striking the Earth could possibly fulfill present energy demands of a mankind. Chlorosome of green sulfur bacteria is re- garded as suitable light-harvesting system for photosynthesis imitation. This work presents comparison of absorption and hole burning spectra of artificially prepared aggregates similar to chlorosomes with different compositions in order to verify the proposed role of quinones in excitation quenching and its redox de- pendence. Absorption spectra at room and helium temperature showed a resem- blance between artificial aggregates and chlorosomes. Hole burning experiments verified the role of quinones in excitation quenching under aerobic conditions. Even more pronounced excitation quenching was observed under anaerobic con- ditions. Significant improvements of the original experimental set-up provided better experimental data which raised many further question that are worth trying to answer in the future.

Les horloges à réseau optique montrent des performances impressionnantes et sont en train de soulever la question de la redéfinition de la seconde. Dans ces systèmes, un laser ultra-stable est utilisé en tant qu’oscillateur local pour sonder des transitions optiques très étroites d’atomes neutres piégés dans un réseau optique. La stabilité ultime de ces dispositifs, déterminée par le nombre d’atomes interrogés à chaque cycle et évaluée à quelques 10−17/sqrt(tau) (où tau est le temps d’intégration), n’est actuellement pas atteinte et est limitée à quelques 10−16/sqrt(tau) par les fluctuations de phase du laser sonde. Si l’amélioration des cavités ultra-stables sur lesquels sont stabilisés les lasers sonde est largement étudiée, le LNE-SYRTE a opté pour une approche plus récente, dans laquelle la référence de fréquence utilisée est un trou brûlé spectral creusé dans un cristal dopé terres rares refroidi à température cryogénique (environ 4 K). Une stabilité court terme de quelques 10−18 pourrait alors être atteinte. Cette thèse décrit la construction de l’expérience et montre ensuite les résultats d’une étude spectroscopique à haute résolution sur des trous brûlés spectraux étroits (FWHM = 3.3 kHz) creusés dans le cristal Eu3+ : Y2SiO5. L’influence du cryostat à cycle fermé sur la stabilité des trous brûlés spectraux est notamment mise en évidence et diminuée. Enfin, une méthode d’asservissement originale basée sur une détection hétérodyne d’un trou brûlé spectral et un asservissement numérique via un FPGA qui permet de verrouiller le laser sur le sommet du trou brûlé spectral étroit est décrit et montre une stabilité court terme de quelques 10−14, ce qui est un premier résultat encourageant pour la suite du projet. / Optical lattice clocks show impressive performances and are begining to raise the question of the redefinition of the SI second. In these systems, an ultra-stable laser is used as local oscillator to probe very narrow optical transitions of neutral atoms trapped in an optical lattice. The ultime stability of these systems, determined by the number of atoms interrogated at each clock cycle, evaluated at a few 10−17/sqrt(tau) (where tau is the integration time), is currently not reached and is limited to a few 10−16/sqrt(tau) by the phase fluctuations of the probe laser. If the enhancement of the ultra-stable cavities, on which are currently stabilized the probe lasers, is widely studied, LNE-SYRTE has adopted a more recent approach where the frequency reference is a spectral hole burned in rare earth doped crystal cooled down at cryogenic temperature (around 4 K). A short term stability of a few 10−18 could be achieved. This thesis describes the construction of the experiment and present the results of a high resolution spectroscopy of narrow spectral holes (FWHM = 3.3 kHz) burned in the crystal Eu3+ : Y2SiO5. The influence of the closed cycle cryostat on the behaviour of the spectral holes is hightlighted and reduced. Finally, an original locking scheme based on a heterodyne detection of a spectral hole and a numerical lock program using FPGA in order to stabilize the laser frequency on the top of the narrow spectral hole is described and shows a short term stability of a few 10−14, which is a first promising result for the future of the project.

La propriété de creusement spectral, que l’on retrouve dans certains cristaux dopés aux ions de terres rares refroidis à basse température offre des possibilités prometteuses pour le traitement analogique de signaux radiofréquence. En effet, celle-ci permet de programmer des fonctions de traitement dans le spectre d’absorption du cristal.Partant des premières démonstrations de principe d’un analyseur spectral radiofréquence large bande instantanée, l’objectif est d’en améliorer les performances, ce qui requiert une modélisation précise de l’interaction laser-matière et de l’ensemble des perturbations inhérentes à la montée en maturité technologique du dispositif. Nous avons par conséquent développé un modèle et cherché à étendre son domaine de validité pour qu’il s’applique à un maximum de protocoles.Nous l’avons ensuite appliqué à un matériau en particulier, à savoir un cristal de Tm³ ⁺ :YAG. Après avoir effectué une série de mesures des différentes caractéristiques intrinsèques à ce cristal, nous avons choisi un protocole d’application relativement proche de celui de l’analyseur spectral que nous cherchons à optimiser, à savoir la création de réseaux spectraux large bande. La comparaison des résultats expérimentaux à ceux de notre modèle nous a permis de démontrer sa validité.Nous avons finalement appliqué notre modèle au cas précis de l’analyseur spectral radiofréquence. Les simulations nous ont permis de déterminer théoriquement comment optimiser ses performances, en particulier la dynamique, avec des paramètres réalistes, atteignables expérimentalement. / The Spectral Hole Burning property, found in some rare-earth ion-doped crystals at low temperature is particularly relevant for analogic processing of radiofrequency signals. Indeed, it enables processing functions to be programmed in the crystal’s absorption spectrum.Starting with the first demonstrations of a wideband radiofrequency spectrum analyser, we aim at improving its performances, which requires an accurate modelling of the light-matter interaction and all the perturbations arising from the upgrade in TRL (Technology Readiness Level). Therefore, we have developed a model and extended its validity domain to a broad variety of SHB-based protocols.We applied this model on a particular material, namely a Tm³ ⁺:YAG crystal. After measuring experimentally the relevant intrinsic parameters of this crystal, we applied our model to a protocol which is quite similar to the one of the spectrum analyser we aim at optimizing, namely the engraving of wideband spectral gratings. The comparison of our experimental results to the simulations from our model proved its validity.Finally we applied it to the exact case of the radiofrequency spectrum analyser. With the simulations, we determined how to improve its performances, and particularly increase the dynamic range with realistic experimental parameters.