This thesis deals with the development of application for fundamental analysis of stocks. Main goal of the thesis is to make application, which will be helpful for individual investors in performing fundamental analysis of stocks. It is desktop application, which performs calculations with high precision and it uses free on-line sources of financial data. The application was developed in Java programming language. It will be available as a~freeware alternative to proprietary fundamental analysis software on the market. The first part describes capital market and stock exchange, makes characteristics of stock and explains principle of fundamental analysis of stocks. In the second part, the market research of fundamental analysis software was realized, design and implementation of the application for fundamental analyiss was described and the application was evaluated.