Surface water-groundwater interaction can provide various stream functions including temperature regulation, nutrient cycling, pollutant attenuation, and habitat creation. However previous literature is divided on the extent and conditions of these benefits. This dissertation has explored the dominance of hydraulic conductivity (K) on hyporheic hydraulics and implications to hyporheic zone functions through a series of modeling studies and field experiments. Computational Fluid Dynamics (CFD) software was used to model the effect of varying K on weir-induced hyporheic exchange hydraulics and heat transport. Fundamental shifts in hydraulics and temperature dynamics occurred at threshold K's. Surface water began noticeably sinking into the bed above a threshold of K=10-3 m/s and inertial forces caused deviation from Darcy's Law. The heat transport model indicated net downstream surface water cooling from weir-induced exchange was maximized by maximizing K (flow-limited function) and thermal heterogeneity increased with K, particularly above K=10-5 m/s. Results suggest that using CFD to predict surface water-groundwater interaction may be important to accurately predict hyporheic hydraulics and functions dependent on flow-rate or residence time. The importance of macropores to hyporheic transport through meander bends was explored. Transport velocities, hydraulic head gradients, and solute transport rates through the meander bend were increased by macropores. Results indicate that macropores can dictate solute or pollutant transport through meander bends and in the hyporheic zone, which in turn may influence biogeochemical cycling and pollutant attenuation. Surface-connected macropores along streams were studied as hydrologically important subsurface heterogeneities for surface water-groundwater interaction. Macropores were common geomorphic features in the Appalachian province of southwestern Virginia, and were inundated during storm events over a one-year period. Banks with macropores experienced increased hydraulic head fluctuations, temperature fluctuations, and K. Macropores increased bank storage rates and solute transport between the channel and riparian groundwater zones, which in turn may influence biogeochemical cycling, pollutant attenuation, and hyporheic habitat. Macropores may be important to hyporheic flow and solute transport in a wide range of conditions and may broaden the portion of the landscape in which hyporheic exchange is important. Future work is needed to further assess the impacts of macropores on hyporheic functions and explore new methods to map and quantify macropore geometries and inter-connectivity. / Ph. D.

The advective motion of seawater governs the transport of almost everything, animate or inanimate, present in the ocean and those lacking the ability to outswim the currents have to follow the flow. This makes modelling of advective ocean transports a powerful tool in various fields of science where a displacement of something over time is studied. The present thesis comprises four different applications of ocean-transport modelling, ranging from large-scale heat transports to the dispersion of juvenile marine organisms. The aim has been to adapt the method not only to the object of study, but also to the available model-data sets and in situ-observations. The first application in the thesis is a study of the oceanic heat transport. It illustrates the importance of wind forcing for not only the heat transport from the Indian to the Atlantic Ocean, but also for the net northward transport of heat in the Atlantic. In the next study focus is on the particle-transport differences between an open and a semi-enclosed coastal area on the Swedish coast of the Baltic Sea. The modelled patterns of sedimentation and residence times in the two basins are examined after particles having been released from a number of prescribed point sources. In the two final studies the transport-modelling framework is applied within a marine-ecology context and the transported entities are larvae of some Scandinavian sessile and sedentary species and non-commercial fishes (e.g. the bay barnacle, the blue mussel, the shore crab and the gobies). The effects of depth distribution of dispersing larvae on the efficiency of the Marine Protected Areas in the Baltic Sea are examined. Further, the diversity in dispersal and connectivity depending on vertical behaviour is modelled for regions with different tidal regimes in the North Sea, the Skagerrak and the Kattegat. The spatial scales dealt with in the studies varied from global to a highly resolved 182-metres grid. The model results, excepting those from the global study, are based on or compared with in situ-data. / <p>At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 2: Submitted. Paper 3: Submitted. 4: Manuscript.</p>

In this study, RF coil geometries are designed for MRI applications using inhomogeneous main magnetic fields. The current density distributions that can produce the desired RF magnetic field characteristics are obtained on predefined cubic, cylindrical and planar surfaces and Tikhonov, CGLS, TSVD and Rutisbauer regularization methods are applied to match the desired and generated magnetic fields. The conductor paths, which can produce the current density distribution calculated for each surface selection and regularization technique, are determined using stream functions. The magnetic fields generated by the current distributions are calculated and the error percentages between the desired and generated magnetic fields are found. Optimum conductor paths that are going to be produced on cubic, cylindrical and planar surfaces and the required regularization method are determined on the basis of error percentages and realizability of the conductor paths. The optimum conductor path calculated for the planar coil is realized and in the measurement done by LakeShore 3-Channel Gaussmeter, an average error percentage of 11 is obtained between the theoretical and measured magnetic field. The inductance values of the realized RF coil are measured / the tuning and matching capacitance values are calculated and the frequency characteristics of the system is tested using Electronic Workbench 5.1. The quality factor value of the tested system is found to be 162.5, which corresponds to a bandwidth of 39,2 KHz at 6,387 MHz (operating frequency of METU MRI system). The techniques suggested in this study can be used in order to design and realize RF coils on prede&macr / ned arbitrary surfaces for inhomogeneous main magnetic fields. In addition, a hand held MRI device can be manufactured which uses a low cost permanent magnet to provide a magnetic field and generates the required RF field with the designed RF coil using the techniques suggested in this study.