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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Structural principles for dynamics of glass networks

Lu, Linghong 26 April 2008 (has links)
Gene networks can be modeled by piecewise-linear (PL) switching systems of differential equations, called Glass networks after their originator. Networks of interacting genes that regulate each other may have complicated interactions. From a `systems biology' point of view, it would be useful to know what types of dynamical behavior are possible for certain classes of network interaction structure. A useful way to describe the activity of this network symbolically is to represent it as a directed graph on a hypercube of dimension $n$ where $n$ is the number of elements in the network. Our work here is considering this problem backwards, i.e. we consider different types of cycles on the $n$-cube and show that there exist parameters, consistent with the directed graph on the hypercube, such that a periodic orbit exists. For any simple cycle on the $n$-cube with a non-branching vertex, we prove by construction that it is possible to have a stable periodic orbit passing through the corresponding orthants for some sets of focal points $F$ in Glass networks. When the simple cycle on the $n$-cube doesn't have a non-branching vertex, a structural principle is given to determine whether it is possible to have a periodic orbit for some focal points. Using a similar construction idea, we prove that for self-intersecting cycles where the vertices revisited on the cycle are not adjacent, there exist Glass networks which have a periodic orbit passing through the corresponding orthants of the cycle. For figure-8 patterns with more than one common vertex, we obtain results on the form of the return map (Poincar{\'e} map) with respect to how the images of the returning cones of the 2 component cycle intersect the returning cone themselves. Some of these allow complex behaviors.

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