Thesis supervisor: Ann F, Budd. Includes bibliographic references (p. 46-49).

Coral reefs are threatened due to anthropogenic stressors, especially due to warming. Corals typically live in a narrow range of environmental conditions; however, some individuals are able to thrive in extreme temperatures. Such colonies could provide insight into how the coral holobiont acclimates or adapts to extreme temperatures. This study used the model coral species Stylophora pistillata (Esper, 1797) in the Saudi Arabian Red Sea, which is abundant and occurs across a range of desired microhabitats to examine the role of the environment on population structure and physiology. Specifically, this project aimed to 1) review the literature on S. pistillata used in stress studies to better understand the threats it faces, and where knowledge gaps exist, 2) conduct a demographic assessment of S. pistillata populations across different reefs and microhabitats, and 3) evaluate the physiological state of S. pistillata colonies occurring in these microhabitats with differing temperature profiles. The literature review revealed disparities in stress studies on S. pistillata, with most originating from the Gulf of Aqaba and conducted on temperature tolerance. The population assessment showed a high spatial variability in size structure, but a tendency for offshore reefs to have larger colonies and higher colony density. It also showed that purple color morphs tended to be more frequently encountered in the exposed reef flat zones. Similarly, the physiological study showed high spatial variability in chlorophyll, protein and lipid content, and skeletal and symbiont density. However, there was a clear seasonal component, with a multivariate analysis revealing the coolest sampling period as distinct. The metabolic profiles of S. pistillata indicated that offshore colonies differ from midshelf and nearshore colonies. Finally, an opportunistic study reports a case of S. pistillata bleaching due to an unusual occurrence of cold stress coupled with a low tide, supporting the notion that continued monitoring of this population on the reef flat is important for documenting rare evets and understanding their impacts on coral ecology. Taken together, this thesis establishes baseline information on the ecology of an important Red Sea coral inhabiting an extreme environment, and will be important for understanding its response to future changes.

La formation d’un squelette de CaCO3 par les coraux Scléractiniaires est à la base de l’édification des récifs coralliens. Nombre de ces coraux constructeurs de récif vivent en symbiose avec des Dinoflagellés photosynthétiques. Ces deux processus reposent sur le transport et l’utilisation de carbone inorganique (Ci) provenant de l’eau de mer pour la photosynthèse, et du métabolisme animal pour la calcification. Cette thèse s’est intéressée à l’étude moléculaire et physiologique des mécanismes, permettant l’utilisation de ce carbone inorganique.Malgré l’importance des transports de HCO3-, aucun transporteur n’a été caractérisé à cejour et leur implication dans la physiologie des coraux n’est que suggérée par la pharmacologie. Durant cette thèse nous avons cloné un gène codant pour un transporteur deHCO3- chez le corail Acropora sp. La conversion de ce HCO3- en CO2 pour la photosynthèse est facilitée par l’acidification de l’environnement proche du Dinoflagellé dans la cellule animale. Cette acidification est causée par une H+-ATPase de type P que nous avons caractérisée. Ce gène est le premier à montrer une expression dépendante de la vie en symbiose chez le symbiote.Nous avons aussi cloné et localisé deux anhydrases carboniques (AC). L’une impliquée dans la calcification et l’autre dans la régulation du pH intracellulaire et l’équilibre entre leCO2 et HCO3-. Une étude pharmacologique de ces deux AC, a identifié des molécules inhibitrices et activatrices qui ont permis des expériences de physiologie in vivo. Celles-ci permettent une analyse plus discriminante du rôle des AC dans la calcification. / Coral reefs edification is based on the formation of a calcium carbonate skeleton byscleractinian corals. Many of these reef-building corals establish a symbiotic association with photosynthetic Dinoflagellates. Both processes involve the transport and utilization of inorganic carbon (Ci) coming from seawater for photosynthesis, and from animal metabolismfor calcification. This work focused on the molecular and physiological study of poorlyknown mechanisms that allow the utilization of Ci.Despite the importance of bicarbonate transport, no transporter has been characterized and their role in coral physiology is only suggested by pharmacological experiments. We have cloned a gene encoding a bicarbonate transporter in the coral Acropora sp. The conversion of this bicarbonate into CO2 for photosynthesis is mediated by the acidification of the are asurrounding the Dinoflagellate in the animal cell. This is performed by a P type H+-ATPasethat we characterized here. This is the first gene with a symbiosis-dependent expression in the symbiont.This work also allowed the cloning and the localization of two carbonic anhydrases (CA).The first one is involved in calcification, the second one plays a role in the intracellular pHregulation and the CO2 / HCO3- equilibrium. A pharmacological study of these two enzymes identified inhibitor and activator compounds that have been then used in physiology experiments. This last approach represents a more accurate study of the role of CAs incalcification.