Typescript. / Bibliography: leaves [110]-118. / vi, 118 l illus

A compost consisting 95% of the sugar mill byproducts: bagasse, filter press mud, and fly ash, applied at 5 t ha$ sp{-1}$, increased vesicular-arbuscular mycorrhizal infection of sugarcane roots in one of three experimental fields in Barbados. In a plant cane field, compost stimulated formation of intracellular hyphal coils and arbuscules, but not vesicles or hyphae. Infection was greater in roots 35 cm and 65 cm than 5 cm distant from the plant stem, and compost effects were not significant at 5 cm. Two other sources of phosphorus, filter press mud and triple superphosphate, did not affect and suppressed mycorrhizal infection, respectively. Two ratoon crops showed no residual effect of compost on mycorrhizal infection. Compost also stimulated tillering, phosphorus content, and perhaps yield of cane, but did not differentially effect high versus low tillering or sloped versus flat areas. Root length, weight, and specific root length were unaffected by compost addition, but root branching was decreased.

South Africa is the leading producer of sugarcane in Africa and one of the largest sugarcane producers in the world. Sugarcane is grown under a wide range of climatic, agronomic, and socio-economic conditions in the country. Stress factors such as water and nutrient deficiencies, and insect pests and diseases are among the most important factors affecting sugarcane production in the country. Monitoring of stress in sugarcane is therefore essential for assessing the consequences on yield and for taking action of their mitigation. The prediction of sugarcane yield, on the other hand is also a significant practice for making informed decisions for effective and sound crop planning and management efforts regarding e.g., milling schedules, marketing, pricing, and cash flows. In South Africa, the detection of stress factors such as nitrogen (N) deficiency and sugarcane thrips (Fulmekiola serrata Kobus) damage and infestation are made using traditional direct methods whereby leaf samples are collected from sugarcane fields and the appropriate laboratory analysis is then performed. These methods are regarded as being time-consuming, labour-intensive, costly, and can be biased as often they are not uniformly applied across sugarcane growing areas in the country. In this regard, the development of systematically organised geo-and time-referenced accurate methods that can detect sugarcane stress factors and predict yields are required. Remote sensing offers near-real-time, potentially inexpensive, quick and repetitive data that could be used for sugarcane monitoring. Processing techniques of such data have recently witnessed more development leading to more effective extraction of information. In this study the aim was to explore the potential use of remote sensing to quantify stress in and predict yield of sugarcane in South Africa. In the first part of this study, the potential use of hyperspectral remote sensing (i.e. with information on many, very fine, contiguous spectral bands) in estimating sugarcane leaf N concentration was examined. The results showed that sugarcane leaf N can be predicted at high accuracy using spectral data collected using a handheld spectroradiometer (ASD) under controlled laboratory and natural field conditions. These positive results prompted the need to test the use of canopy level hyperspectral data in predicting sugarcane leaf N concentration. Using narrow NDVI-based vegetation indices calculated from Hyperion data, sugarcane leaf N concentration could reliably be estimated. In the second part of this study, the focus was on whether leaf level hyperspectral data could detect sugarcane thrips damage and predict the incidence of the insect. The results indicated that specific wavelengths located in the visible region of the electromagnetic spectrum have the highest possibility of detecting sugarcane thrips damage. Thrips counts could also adequately be predicted for younger sugarcane crops (4–5 months). In the final part of this study, the ability of vegetation indices derived from multispectral data (Landsat TM and ETM+) in predicting sugarcane yield was investigated. The results demonstrated that sugarcane yield can be modelled with relatively small error, using a non-linear random forest regression algorithm. Overall, the study has demonstrated the potential of remote sensing techniques to quantify stress in and predict yield of sugarcane. However, it was found that models for detecting a stress factor or predicting yield in sugarcane vary depending on age group, variety, season of sampling, conditions at which spectral data are collected (controlled laboratory or natural field conditions), level at which remotely-sensed data are captured (leaf or canopy levels), and irrigation conditions. The study was conducted in only one study area (the Umfolozi mill supply area) and very few varieties (N12, N19, and NCo 376) were tested. For practical and operational use of remote sensing in sugarcane monitoring, the development of an optimum universal model for detecting factors of stress and predicting yield of sugarcane, therefore, still remains a challenging task. It is recommended that models developed in this study should be tested – or further elaborated – in other South African sugarcane producing areas with growing conditions similar to those under which the predictive models have been developed. Monitoring of sugarcane thrips should also be evaluated using remotely-sensed data at canopy level; and the ability of multispectral sensors other than Landsat TM and ETM+ should be tested for sugarcane yield prediction. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

The fungal disease smut (causal agent: Ustilago scitaminea H. & P. Sydow) and stalk borer Eldana saccharina Walker place major constraints on sugarcane agriculture in South Africa. The best approach for management is the introduction of resistant cultivars; however, conventional field-based screening for pest and disease resistance is a lengthy process. This study evaluated in vitro techniques combined with artificial inoculation of 12 week old in vitro plantlets and 8-10 week old embryogenic calli as rapid screening methods. Preliminary investigations were conducted on cultivars with known field ratings to smut and E. saccharina: NCo376, N26 and N39; and 5 „test‟ cultivars, whose identities were undisclosed until completion of experiments, were used to assess the accuracy of protocols. Infective U. scitaminea sporidia generated from teliospores, were used as inocula. Development of a callus protocol was unsuccessful due to sporidial and mycelial overgrowth, despite addition of a contact fungicide, Dithane M-45® (0.025 g/l) and a biocide/fungicide, PPMTM (5 ml/l), to media. Plantlet inoculation by injection, 1 cm above the apical meristem, resulted in 12% and 20% of smut susceptible NCo376 plantlets producing smut whips after 5 weeks when inoculated with 1 x 106 and 1 x 109 sporidia/ml, respectively. Smut whip production in 5 of the 8 (63%) cultivars inoculated with the lower sporidial concentration correlated with their field resistance ratings. In addition, whips harvested from in vitro plantlets were a valuable source of aseptic teliospores for future research. Ongoing work involves inoculation of NCo376 calli with such teliospores and maintenance on medium with PPMTM - emergence of whips from plantlets remains to be assessed. The E. saccharina screening protocol involved surface decontamination of eggs with 1% sodium hypochlorite (NaOCl) for 15 min. Feeding bioassays were conducted by placement of first instar larvae on in vitro plantlets and calli for 3 and 2 weeks, respectively. Larval mass, length and percentage infestation were recorded. Although greater larval size was expected in susceptible compared with resistant cultivars, the results did not support this. Significant differences in plantlet infestation were observed between susceptible (94-98%) and resistant (72-86%) lines. No significant differences were found in the callus feeding bioassay. However, a 24 h callus choice bioassay which investigated larval preference between callus genotypes compared with NCo376, showed significant differences and correctly discerned cultivar susceptibility according to field ratings. / Thesis (M.Sc.)-University of KwaZulu-Natal, Westville, 2010.

Copies of author's previously published articles inserted. / Includes corrigendum. / Bibliography: leaves 97-106. / xiii, 106, [69] leaves, [31] leaves of plates : ill. (some col.), maps ; 30 cm. / Title page, contents and abstract only. The complete thesis in print form is available from the University Library. / This thesis reports an investigation of the etiology of ScSMD (sugarcane striate mosaic disease) by biological and microscopic studies and by nucleic acid studies. Studies of ScSMD affected sugarcane are followed by the detection, isolation, cloning and partial sequencing of a disease specific dsRNA, and the tentative classification of the putative viral agent from the partial sequence. This study also describes the ScSMD associated virion and an improved protocol for the purification of dsRNA. / Thesis (Ph.D.)--University of Adelaide, Dept. of Crop Protection, 1997

No description available.

Eldana saccharina Walker (Lepidoptera: Pyralidae) is an indigenous insect widely distributed throughout Sub-Saharan Africa that is a major pest of sugarcane in southern Africa. Studies have shown that populations from West Africa have distinct behavioural differences compared to populations from eastern and southern Africa. In addition, the parasitoid guilds attacking populations in these regions are markedly different. This marked behavioural and parasitoid guild variation evoked a hypothesis of genetic diversification. To evaluate this hypothesis a project on the phylogeography of E. saccharina was initiated. The project was planned to include sampling of as many regions as possible in its known range in Africa, to obtain specimens of E. saccharina for genetic analysis. When these surveys were initiated in Ethiopia, it was found that there was no published literature available on the occurrence of stem borers in Ethiopian sugarcane. It was thus clear that no stalk borer/parasitoid surveys had been completed in either sugarcane or any large grass and sedge indigenous hosts in Ethiopia. The study was thus expanded beyond the investigation of only the genetic diversity of E. saccharina, to include area-wide surveys to determine ecological aspects of the borer complex in suspected host plants, including sugarcane, in Ethiopia. In this way the host plant range and distribution of E. saccharina and other sugarcane borers in Ethiopia in particular could be determined, samples for a larger phylogeography project could be collected, and the insect's impact on sugarcane could be assessed. Quantified area-wide surveys of the sugarcane estates and small-scale farmer fields of Ethiopia were conducted between December 2003 and February 2004. The surveys verified the presence of four lepidopteran stem borer species on Ethiopian sugarcane. These were Chilo partellus Swinhoe (Lepidoptera: Crambidae), Sesamia calamistis Hampson (Lepidoptera: Noctuidae), Busseola fusca Fuller (Lepidoptera: Noctuidae) and Busseola phaia Bowden (Lepidoptera: Noctuidae). The surveys indicated that Busseola species are the major and most widely distributed sugarcane stem borers in sugarcane farms of Ethiopia. Over 70% of the peasant sugarcane fields visited were infested by these borers, with the highest levels of infestation (35% and 50%) being in the northern and western part of the country, respectively. Busseola was also the predominant stem borer of sugarcane in two of the three estates (Wonji and Finchawa). Chilo partellus and S.calamistis were recovered in very low numbers at all the commercial estates and from peasant farms in the western part of Ethiopia. However, C. partellus was the predominant sugarcane stem borer in lowland areas of northern, southern and eastern parts of the country. Eldana saccharina was recovered from large sedges in waterways of Metehara and Wonji sugar estates in the central part of the country, and sedges growing around lakes in northern and southern Ethiopia, but not from sugarcane anywhere in Ethiopia. The phylogeographic study conducted on E. saccharina populations from eleven countries of Africa clearly showed the population structure of the insect within the continent. Five hundred and two base pairs of the mitochondrial DNA (mtDNA), corresponding to the Cytochrome Oxidase subunit I (COl) region, were sequenced to clarify phylogenetic relationships between geographically distant populations from eastern, northern, southern and western Africa. Results revealed that E. saccharina is separated into four major populations corresponding to their geographical location, i.e. West African, Rift Valley and two southern African populations. Sequence divergence between the four populations ranged from 1% to 4.98%. The molecular data are congruent with an isolation by distance pattern except for some of the specimens from eastern and southern Africa where geographically close populations are genetically distant from each other. Geographical features such as the Rift Valley and large water bodies in the continent seem to have a considerable impact on the genetic diversity in E. saccharina. Identification of field-collected stem borer specimens was done using classical taxonomic techniques, except for Busseola spp. where DNA barcoding was used. As field-collected larval material of Busseola died before reaching the adult stage, identification of species using adult morphology was not possible. 'Sequence divergence in the COl gene was used as a tool to identify the species of Busseola attacking Ethiopian sugarcane. Partial COl sequences from Ethiopian specimens were compared with sequences of already identified noctuid species from the East African region. Results of the sequence analysis indicated that the Busseola species complex in Ethiopian sugarcane comprised B. fusca and B. phaia. Sequence divergences between Ethiopian Busseola species was as high as 5.0 %, whereas divergences within species were less than 1% in both species identified. Several larval parasitoids, bacterial and fungal diseases of stem boring caterpillars were also recorded in Ethiopian sugarcane. Amongst these was Cotesia flavipes Cameron (Hymenoptera: Braconidae). This exotic parasitoid has been introduced into several African countries for the control of C. partellus in maize and sorghum, but had never been released in Ethiopia. To investigate the origin of C. flavipes in Ethiopian sugarcane, molecular analyses were conducted on Ethiopian specimens from sugarcane and specimens of C. flavipes from different countries of Africa released from the Kenyan laboratory colony, again using COl sequences. Results of the analysis revealed that the C. flavipes population that had established in sugarcane fields of Ethiopia was similar to the south east Asian populations released against C. partellus in maize in other parts of Africa, and different from other populations of this species, providing evidence that the Ethiopian C. flavipes is likely to be a descendant of the original Pakistani population that was released in different parts of Africa. The study reveals the importance of lepidopteran stem borers in sugarcane production in Ethiopia and highlights the role of molecular methods in species identification and determining phylogenetic relationships. More importantly, this study establishes the continental phylogeographical pattern of the indigenous moth, E. saccharina. The impact of geological events, geographic barriers and cropping systems on the evolution, distribution and abundance of stem borers are discussed. Future areas of research for understanding more about the phylogeographic relationships of E. saccharina and management of stem borers are discussed. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

The first serious outbreak of brown rust of sugarcane caused by Puccinia melanocephala Syd. & P. Syd. was reported in India in 1907. It was first reported in South Africa (SA) in 1941 on the variety Co301 and is now present in almost all the sugarcane growing areas of the world. In SA, it is now described as an important disease of sugarcane, causing yield losses of up to 26% in susceptible varieties. Within the SA sugar industry, rust is controlled through the use of resistant varieties as it is the most economical method of control. However, most of the newer varieties that are being released have an intermediate resistance rating for rust. An integrated management approach for the control of rust is therefore being investigated. Aspects investigated in this study included environmental conditions required for development of the disease i.e. epidemiology, the use of silicon (Si) as a cultural control method against brown rust and identification of gene sequences expressed in response to brown rust infection. For the epidemiology study, inoculated plants were incubated in a dew chamber at different temperatures and leaf wetness periods. The choice of leaf wetness duration and temperature was based on urediniospore germination studies. The optimum temperature for urediniospore germination and disease development at > 98% relative humidity was found to be between 20 and 25°C with nine hours of leaf wetness. Silicon has been shown to reduce the incidence of diseases and pests in a number of crops. The ability of sugarcane to accumulate Si and the location of Si deposition was established using two uptake and deposition trials. Different concentrations of Si were applied to the plant and accumulation in the roots, stalks, old leaves and young leaves was determined using inductively coupled plasma optical emission spectrometry, with accumulation found to be roots > old leaves > stalks > young leaves. Silicon deposition in the leaves was determined using energy dispersive X-ray mapping on freeze dried specimens and significant differences were found between the upper epidermis, lower epidermis and mesophyll with the most Si being deposited in the lower epidermis. For disease severity, plants were naturally infected with rust and rated weekly. A significant decrease in disease severity and area under disease progress curve was noted when the Si concentration increased, indicating that Si has potential in reducing rust incidence. Currently, the most reliable and economical method of managing brown rust is with the use of resistant varieties. Identification of resistance within breeding lines is therefore important. For this part of the study, suppression subtractive hybridization was used as a tool to identify differentially expressed genes between a susceptible and resistant variety and a susceptible and intermediate variety, in response to brown rust infection. Two efficient subtracted cDNA libraries were generated and differentially expressed sequences were identified within each library. The results of this study show potential for the development of molecular markers which could be used for the early identification of brown rust resistance during the breeding process. This study forms a firm basis on which an integrated management strategy, for the management of brown rust in the SA sugar industry, could be designed. The cDNA sequences identified could be further investigated and used to develop molecular markers to select for rust resistant varieties, the epidemiology results together with further field data could be used to develop a disease prediction model and Si has potential in the field to reduce brown rust severity. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2009.

Since becoming a pest in graminaceous crops in Africa, the African sugarcane stalkborer Eldana saccharina Walker has been the subject of much study. Its very cryptic habits have precluded more commonly available control measures being used against it. Biological control is regarded as a viable control option, but the apparent paucity of parasitoids in graminaceous crops leads to E. saccharina being regarded as lacking parasitoids, and thus not a good candidate for biological control in the classical sense. In contrast, this project argues that interactions in indigenous hosts of E. saccharina had been ignored, and that classical biocontrol principles and basic ecological theory could be applied by the discovery, collection and introduction of parasitoids from its indigenous habitat to its newly adapted habitat, sugarcane. The habitat offered by Cyperus papyrus L. was shown to be heterogenous both temporarily and spatially. Umbels, from young through mature to senescent, were available in the same proportion for colonisation throughout the year. Umbels with sexual reproductive stages (seeds) were present from early spring into late summer, and provided an additional component to the already heterogenous environment. Young umbels, in addition, developed from rhizomes in an environment regarded as sub-optimal for photosynthesis, until they reached the canopy. All stages of umbels were attacked by E. saccharina, but larvae were only found in rays of umbels and in the apex of the culm, which was the meristematic area for rays, both high nutrient areas. Young umbels were never found with borer pupae, only smaller larvae, indicating that E. saccharina development matched growth of young umbels until they reached canopy height. Also, the majority of borings found were occupied, indicating that infestation of young umbels was recent. All stages of E. saccharina development were found in mature umbels, which were also most abundant at anyone time. Numerous empty borings were found in addition to those occupied, indicative of past occupation by E. saccharina. Very few young larvae were found in old umbels, the majority of life stages found being pupae or empty pupal cases, and also many empty borings, showing that old umbels were not suitable for E. saccharina development. A guild of parasitoids which comprised Orgilus bifasciatus Turner, the most common parasitoid of small and smaller medium E. saccharina larvae, Goniozus indicus Ashmead the most common parasitoid of larger medium and large larvae, and an entomogenous fungus Seauveria bassiana (Sals.) Vuill. attacking all life stages of E. saccharina was found. Three uncommon parasitoids of smaller saccharina were also found, viz. Sassus sublevis (Granger), Iphiaulax sp. and Venturia sp. The former three natural enemies were instrumental in depressing a major outbreak within two months of it being observed and then maintaining the host population at a lower level in C. papyrus. G. indicus and B. bassiana were most effective during the summer and autumn months, and O. bifasciatus most effective during the winter months. This study supports the hypotheses that the apparent paucity of parasitoids and lack of biological control success thus far against E. saccharina in sugarcane has been because very little was known about its ecology and biology in its numerous indigenous host plants, and that studies of the latter factors coupled with ecological theory could enhance biological control programmes against this borer. As more indigenous host plants are investigated in the same way as has been done with C. papyrus, more will become known of natural enemies of E. saccharina. Parasitoid guilds could be selected, even from rare parasitoids in the more stable indigenous habitats, which would provide control in the unstable habitat of sugarcane. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1994.

The eldana stalk borer (Eldana saccharina Walker) is the most serious pest of the Southern African sugarcane industry, and it is imperative that effective control measures are available to minimize economic damage. Because conventional control methods have had limited success, cultivar resistance is seen as the most viable method of controlling infestation. However, due to the space- and time-consuming nature of the present screening methods, only small numbers of cultivars can be tested relatively late in the Plant Breeding selection programme. Increased resistance in breeding and selection populations is therefore slow. Buds are a preferred entry point of eldana larvae as they are softer than the rind that is present on the rest of the stalk surface. Preliminary results by other workers suggested that near infrared spectroscopy (NIRS) could provide a rapid screening method for the chemical profile in bud scales, the outer coating of buds and therefore the first contact point of an invading larva. If feasible, analysis of samples using this method could be done in the South African Sugar Experiment Station's (SASEX) stage two selection trials, providing an early indication of eldana resistance on large numbers of cultivars, without the necessity of separate trials. However, knowledge of how environments, position of bud scales on the stalk and age affect NIRS is required in order to determine the feasibility of the method. Planting of a trial with an identical set of genotypes across a range of environments, sampled at a number of ages, would provide the necessary information on environmental effects, whilst simultaneously providing the necessary range of samples to develop a calibration between bud scale chemical profiles and eldana resistance ratings. Inheritance patterns of the characteristics being measured is also required if they are to be used in a breeding programme. The original work by Rutherford (1993) was carried out on only five calibration sets (a set of standard clones with relatively well-known eldana resistance ratings), and different sets were not comparable due to what was assumed to be environmental differences between calibration sets. One aspect of the current experiment was to examine more closely the effect of genotype x environment interaction (G x E) on the performance of the NIRS technique under a range of conditions. Two sites were chosen to represent the conditions encountered in trials carried out by SASEX. The crops were sampled at three ages, representing the range of ages at which sugarcane is harvested in South Africa. Two locations on the stalk were also examined, top and bottom, for removal of bud scales, based on the assumption that aging of bud scales may affect chemical composition. A new NIRSystems 6500 instrument was acquired during the course of this study. Data from the new instrument indicated that there were no longer differences between the different calibration sets, and therefore no longer differences between environments. Spectra for different samples were very close, the differences being of the same scale as those recorded with repeated measures of the same samples, or between the readings for the standard solvent solution. This led to the conclusion that the differences observed on the original NIRSystems 5000 instrument were due to instrument error, not environmental differences. More importantly, the different calibration sets were not comparable despite being similar to each other. Prediction from one calibration set to another was low. These observations led to the conclusion that NIRS was not a suitable method for determining chemical compounds associated with tolerance of sugarcane genotypes to eldana borer. The original NIRS instrument was subject to error, and the small number of calibration sets included in the study led to the erroneous conclusion that NIRS was suitable for the prediction of varietal tolerance to eldana. With the acquisition of the new instrument, the errors generated by the old instrument became apparent. With the increase in number of calibration sets included in the study, it also became apparent that a global calibration covering all environments was not possible. An analysis of the heritability of the chemical compounds associated with eldana resistance was also included in this study. A biparental progeny design of 24 crosses with 33 unselected offspring per cross was used. This trial would have been analysed once the calibration had been developed using the environmental trial, and it would have provided knowledge of the breeding behaviour of the chemical compounds associated with tolerance to eldana. Because the NIRS technique proved to be unsuitable for detection of chemical compounds associated with eldana resistance, the heritability of these chemical compounds could not be studied. As the NIRS study did not produce data, the G x E interaction analysis and determination of heritability was applied to the bud scale mass data set. This study showed a relatively low positive correlation between bud scale mass and resistance to eldana. The broad sense heritability estimate for bud scale mass from the G x E interaction analysis was 0.45, and the narrow sense heritability estimate from parent-offspring regression analysis was approximately 0.27, suggesting a low degree of genetic determination in bud scale mass. The G x E interaction analyses gave varying results depending on the method used. The ANOVA analysis suggested that ages, sites and years had an effect on bud scale mass, while deviation from maximum plot showed no significance for G x E interactions. The number and choice of genotypes selected as unstable also varied with the method used to determine the stability of individual genotypes. Regression analysis and rank order analysis revealed a number of unstable genotypes, whilst stability variance and ecovalence, which produced similar results, detected only two unstable genotypes. In the rank order analysis correction of data to remove genotype effect, reduced the number of unstable genotypes, suggesting that the G x E interaction effect was partially confounded with the bud scale mass of the genotypes. This was a more reliable method than the uncorrected rank order analysis, and would be the preferred analysis type of all those tried. / Thesis (M.Sc.)-University of Natal, Pietermaritzburg, 2003.