I estimated yield, population metrics, production costs, and evaluated consumer acceptability and nutritive content of crayfish (Procambarus clarkii, P. zonangulus) harvested from moist-soil wetlands in the Lower Mississippi Alluvial Valley (MAV) during springs 2009-2011. I also compared nutrient and sediment concentrations and loads exported from moist-soil wetlands and nearest agriculture fields in the MAV during winters 2010-2012. Daily yield of crayfish from moist-soil wetlands was 2.4 kg (wet) ha-1 (SE = 0.50; 95% CI = 1.3-3.4). When graded by size, yield of large crayfish (> 30 g) from wetlands dominated by P. clarkii was four times greater (P < 0.05) than yield of large crayfish from wetlands dominated by P. zonangulus. Crayfish harvesting costs (2013 US dollars [$]) ranged from $405.69 ha-1 to $917.88 ha-1 and breakeven selling prices ranged from $3.74 kg-1 to $8.49 kg-1. Consumer acceptability, proximate composition, and total fatty acid content of P. clarkii did not differ (0.73 > P > 0.11) between crayfish harvested from moist-soil wetlands and rice-crayfish culture fields in Louisiana. Although selling prices likely will not compete with prices for crayfish harvested from Louisiana rice fields ($2.75 kg-1; 2012 US$), harvesting crayfish from moist-soil wetlands may enhance recreational opportunities while increasing awareness of ecosystem benefits of these wetlands. Although concentrations (mg L-1) of soluble reactive phosphorus (SRP) in runoff from moist-soil wetlands and adjoining croplands did not differ (P = 0.95), concentrations of total and particulate phosphorus, nitrate-nitrogen, and total suspended solids were 42, 52, 86, and 89% lower (P < 0.03) in runoff from moist-soil wetlands. However, the load (kg ha-1) of SRP from moist-soil wetlands was six times (P = 0.08) greater than load from croplands. Estimated loading rate of total phosphorus from moistsoil wetlands (2.36 kg ha-1 year-1) was greater than the rate reported by regulatory agencies in Mississippi (1 kg ha-1 year-1), but field replication is needed to verify these results. Nearly 80% of the total loads exported from moist-soil wetlands occurred during < 30% runoff events. Retention of runoff from storm events may reduce phosphorus loss from moist-soil wetlands while not interfering with conservation objectives.

Human actions have led to the destruction or degradation of natural habitats in virtually all parts of the Earth. Ecosystem restoration is one method to mitigate the effects of habitat loss. But restoration ecology is a young discipline and there is much left to be learned about how to effectively restore ecosystem functioning. This dissertation examines how soil amendments and planted herbaceous species diversity affect the restoration of ecosystem functions in wetlands, while also testing basic ecological questions that help us understand ecosystem function. Using data from the greenhouse and from the biodiversity and ecosystem function field experiment in Duke Forest, in Durham, NC, I examine how plant trait diversity, average plant traits, and environmental conditions influence nitrogen (N) removal from restored wetlands. Field data collected from a restored wetland in Charlotte, NC, enables me to examine how soil organic amendments influence the development of soil properties, processes, and plant communities. Finally, combining field data from both sites, I compare how soil properties influence denitrification potential in both restored wetlands. One unanswered question in the research relating biodiversity and ecosystem function is whether species diversity or species traits are more important drivers of ecosystem function. The first portion of my dissertation poses several hypotheses about how plant traits, plant trait diversity (calculated as a multivariate measure of plant trait diversity), and environmental conditions are likely to influence two ecosystem functions, biomass N and denitrification potential (DEA), and then examines these hypotheses in a restored wetland in the Piedmont of N.C. Using multiple linear regression, I demonstrate that functional diversity (FD), of traits important for plant growth had no effect on biomass N, but two plant traits, leaf area distribution ratio (LADR) and water use efficiency (WUE), had strong negative effects. Soil inorganic N also had a positive effect. For DEA, FD of traits related to denitrification also did not have a significant effect, but there was evidence of a weak positive effect. Two plant traits had positive effects on DEA, aboveground biomass and aboveground biomass C:N ratio; two traits, belowground biomass C:N ratio and root porosity, had negative effects. Soil inorganic N and soil organic matter also had positive effects on DEA. Results from a Principal Components Analysis (PCA) clustering plant species in trait-space, suggest that <em>Carex</em>, <em>Scirpus</em>, and <em>Juncus</em> species tend to be associated with traits that maximize biomass N, while there is no specific region of trait space or set of species that correspond to high DEA. Instead, there are multiple plant trait combinations that can lead to high DEA. These results suggest that, even though plant diversity (as measured by FD) does not significantly influence biomass N or denitrification, plant trait diversity is important to maintaining multiple ecosystem functions simultaneously. Restored wetlands tend to have lower levels of soil organic matter than natural reference wetlands. Low soil organic matter can limit nutrient cycling as well as plant survival and growth in restored wetlands. In the second portion of my dissertation, I examine how soil compost amendments influence the development of soil properties and processes as well as plant communities at a restored wetland in Charlotte, NC. Using two-way analyses of variance, multiple comparisons of means, and regression, I determine that available N and phosphorus (P) increase with increasing soil organic matter in both the low and high marsh. Total microbial biomass (MB) and microbial activity (measured by denitrification potential (DEA)) also significantly increase with increasing organic matter in both marsh communities, as does soil moisture. Neither total plant biomass (in the low marsh), nor plant species richness (in the high or low marsh) demonstrate any consistent patterns with soil organic matter level in the first three years post-restoration. These results suggest that compost amendments can positively influence some soil properties (i.e. soil available N, P, microbial biomass, and soil moisture) and some ecosystem functions including nutrient cycling (such as denitrification potential), but may have limited early impacts on plant communities. In restoration ecology there is a general assumption that restoring ecosystem structure will also restore ecosystem function. To test this fundamental assumption, I examine whether two restored wetlands demonstrate similar general relationships between soils variables (i.e. do the two systems have similar soil ecosystem structure), and whether the importance of each soil relationship is the same at both systems (i.e. do the two systems demonstrate the same soil function). I use structural equation modeling to both pose hypotheses about how systems function and to test them using field data. I determine that the same model structure of soil relationships is supported by data from these two distinct, yet typical urban restored wetland ecosystems (that is, the two systems have similar soil structure). At both systems higher soil organic matter is the most important predictor of higher DEA; however, most of the other relationships between soils variables are different at each system (that is, the two systems are not functioning in the same way). These results suggest that some fundamental relationships between soil properties and microbial functioning persist even when restored wetlands have very different land-use histories, plant communities, and soil conditions. However, restoring similar soil ecosystem structure does not necessarily lead to the restoration of similar soil function. Ultimately, I hope this research advances our understanding of how ecosystems function and improves future wetland restoration efforts. / Dissertation

Les chloroacétanilides sont une famille d'herbicides largement utilisée en agriculture, et contribuent de ce fait à la pollution environnementale. Leur devenir, y compris dans les écosystèmes rédox-dynamiques récepteurs comme les zones humides, est encore mal compris. Dans ce travail, la dégradation microbienne de chloroacétanilides (métolachlore, acétochlore et l'alachlore) a été étudiée par des approches innovantes de chimie analytique et de biologie moléculaire, à l'échelle du laboratoire en utilisant des microcosmes en colonnes, et in situ dans des zones humides construites à ciel ouvert et conçues pour traiter les intrants chimiques issus de l'agriculture.Une nouvelle méthode d’analyse isotopique composés-spécifiques a été développée. Les résultats indiquent la biodégradation des chloroacétanilides dans les zones humides, également suggérée par la détection des produits de dégradation correspondants (acides éthane sulfonique et oxanilique). Dans les expériences en microcosme de laboratoire, les chloroacétanilides ont principalement été dégradés dans les zones anoxiques de la rhizosphère, suggèrant un rôle prépondérant des processus anaérobies. L'analyse par chromatographie chirale du métolachlore a en outre révélé la dégradation préférentielle de l'énantiomère S du métolachlore, confirmant l'importance des processus biologiques dans la dissipation des chloroacétanilides. Les corrélations qui ont pu être observées entre les changements de variables hydrochimiques et de conditions hydrauliques et des différences de composition bactérienne détectées par génotypage par polymorphisme de longueur des fragments de restriction (T-RFLP) et par pyroséquençage du gène ARNr 16S confirme le potentiel de bio-indicateurs basés sur l'ADN pour suivre le fonctionnement des écosystèmes.Sur la base de ce travail, la détection et l'identification des micro-organismes et des voies biochimiques responsables de la dégradation de chloroacétanilides dans les zones humides, ainsi que l'élaboration d'indicateurs génétiques bactériens pour le suivi de la dégradation de chloroacétanilides en zones humides, émergent comme autant d’objectifs de recherche à court-terme. / Chloroacetanilide herbicides are widely used in agriculture, and thereby contribute to environmental pollution. Their fate, including in redox-dynamic receptor ecosystems such as wetlands, remains poorly understood. In this work, microbial degradation of chloroacetanilides (metolachlor, acetochlor and alachlor) was investigated by emerging chemical and molecular biological approaches, at the lab-scale using microcosm columns, and in situ, in outdoor constructed wetlands designed for the treatment of chemical pollutants originating from agriculture.A novel compound-specific isotope analysis (CSIA) method was developed, and the results indicated biodegradation of chloroacetanilides in wetlands, which was also suggested by detection of ethane sulfonic acid and oxanilic acid degradation products. In lab-scale wetland microcosms, chloroacetanilides were mainly degraded in anoxic rhizosphere zones, suggesting a predominant role of anaerobic processes. Chiral chromatographic analysis of metolachlor revealed preferential degradation of the (S) enantiomer of metolachlor, and further confirmed the role of biological processes in chloroacetanilide dissipation. Changes in hydrochemical variables and hydraulic conditions correlated with differences in wetland bacterial composition detected by terminal restriction fragment length polymorphism (T-RFLP) and pyrosequencing analyses of the bacterial 16S rRNA gene, confirming the potential of DNA-based bioindicators for follow-up of ecosystem functioning.On the basis of this work, detecting and identifying the microorganisms and biochemical pathways responsible for chloroacetanilide degradation in wetlands, as well as developing bacterial gene-based indicators of wetland functioning, emerge as research objectives for the near future.