Thesis (Ph. D.)--Joint Program in Applied Ocean Physics and Engineering (Massachusetts Institute of Technology, Dept. of Ocean Engineering and the Woods Hole Oceanographic Institution), 2001. / Includes bibliographical references (leaves 149-155). / This thesis takes a look at the near boundary flow about fish-like swimming bodies. Experiments were performed up to Reynolds number 106 using laser Doppler velocimetry and particle imaging techniques. The turbulence in the boundary layer of a waving mat and swimming robotic fish were investigated. How the undulating motion of the boundary controls both the turbulence production and the boundary layer development is of great interest. Unsteady motions have been shown effective in controlling flow. Tokumaru and Dimotakis (1991) demonstrated the control of vortex shedding, and thus the drag on a bluff body, through rotary oscillation of the body at certain frequencies. Similar results of flow control have been seen in fish-like swimming motions. Taneda and Tomonari (1974) illustrated that, for phase speeds greater than free stream velocity, traveling wave motion of a boundary tends to retard separation and reduce near-wall turbulence. In order to perform experiments on a two-dimensional waving plate, an apparatus was designed to be used in the MIT Propeller tunnel, a recirculating water tunnel. It is an eight-link piston driven mechanism that is attached to a neoprene mat in order to create a traveling wave motion down the mat. A correlation between this problem and that of a swimming fish is addressed herein, using visualization results obtained from a study of the MIT RoboTuna. The study of the MIT RoboTuna and a two-dimensional representation of the backbone of the robotic swimming fish was performed to further asses the implications of such motion on drag reduction. PIV experiments with the MIT RoboTuna indicate a laminarisation of the near boundary flow for swimming cases compared with non-swimming cases along the robot body. Laser Doppler Velocimetry (LDV) and PIV experiments were performed. / (cont.) LDV results show the reduction of turbulence intensity, near the waving boundary, for increasing phase speed up to 1.2 m/s after which the intensities begin to increase again through Cp = 2.0 where numerical simulations by Zhang (2000) showed separation reappearing on the back of the crests. Velocity profiles who an acceleration of the fluid beyond the inflow speed at the crest region increases with increased phase speed and no separation was present in the trough for the moving wall. The experimental techniques used are also discussed as they are applied in these experiments. / by Alexandra Hughes Techet. / Ph.D.

Thesis (Ph. D.)--Joint Program in Marine Geology and Geophysics (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2007. / This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections. / Includes bibliographical references (p. 167-196). / This thesis presents three studies which apply geophysical tools to the task of better understanding mantle melting phenomena at the upper and lower boundaries of the mantle. The first study uses seafloor bathymetry and small variations in the gravitational acceleration over the Hawaii-Emperor seamount chain to constrain the changes in the igneous production of the hot spot melting in the mantle which has created these structures over the past 80 My. The second study uses multichannel seismic reflection data to constrain the location and depth of axial magma chambers at the Endeavour Segment of the Juan de Fuca spreading ridge, and then correlates these magma chamber locations with features of the hydrothermal heat extraction system in the upper crust such as microseismicity caused by thermal cracking and high temperature hydrothermal vent systems observed on the seafloor. The third study uses two-dimensional global pseudospectral seismic wave propagation modeling to characterize the sensitivity of the SPdKS seismic phase to two-dimensional, finite-width ultra-low velocity zones (ULVZs) at the core-mantle boundary. Together these three studies highlight the dynamic complexities of melting in the mantle while offering new tools to understand that complexity. / by Emily Mary Van Ark. / Ph.D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Scleractinian corals extract calcium (Ca²⁺) and carbonate (CO₃²⁻) ions from seawater to construct their calcium carbonate (CaCO₃) skeletons. Key to the coral biomineralization process is the active elevation of the CO₃²⁻ concentration of the calcifying fluid to achieve rapid nucleation and growth of CaCO3 crystals. Coral skeletons contain valuable records of past climate variability and contribute to the formation of coral reefs. However, limitations in our understanding of coral biomineralization hinder the accuracy of (1) coral-based reconstructions of past climate, and (2) predictions of coral reef futures as anthropogenic CO₂ emissions drive declines in seawater CO₃²⁻ concentration. In this thesis, I investigate the mechanism of coral biomineralization and evaluate the sensitivity of coral reef CaCO₃ production to seawater carbonate chemistry. First, I conducted abiogenic CaCO₃²⁻ precipitation experiments that identified the U/Ca ratio as a proxy for fluid CO₃²⁻ concentration. Based on these experimental results, I developed a quantitative coral biomineralization model that predicts temperature can be reconstructed from coral skeletons by combining Sr/Ca - which is sensitive to both temperature and CO₃²⁻ - with U/Ca into a new proxy called "Sr-U". I tested this prediction with 14 corals from the Pacific Ocean and the Red Sea spanning mean annual temperatures of 25.7-30.1 °C and found that Sr-U has uncertainty of only 0.5 °C, twice as accurate as conventional coral-based thermometers. Second, I investigated the processes that differentiate reef-water and open-ocean carbonate chemistry, and the sensitivity of ecosystem-scale calcification to these changes. On Dongsha Atoll in the northern South China Sea, metabolic activity of resident organisms elevates reef-water CO₃²⁻ twice as high as the surrounding open ocean, driving rates of ecosystem calcification higher than any other coral reef studied to date. When high temperatures stressed the resident coral community, metabolic activity slowed, with dramatic effects on reef-water chemistry and ecosystem calcification. Overall, my thesis highlights how the modulation of CO₃²⁻, by benthic communities on the reef and individual coral polyps in the colony, controls the sensitivity of coral reefs to future ocean acidification and influences the climate records contained in the skeleton. / by Thomas Mario DeCarlo. / Ph. D.

Thesis (S.M.)--Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science; and the Woods Hole Oceanographic Institution), 2012. / Cataloged from PDF version of thesis. / Includes bibliographical references (p. 139-143). / Adaptive equalization is an important aspect of communication systems in various environments. It is particularly important in underwater acoustic communication systems, as the channel has a long delay spread and is subject to the effects of time- varying multipath fading and Doppler spreading. The design of the adaptation algorithm has a profound influence on the performance of the system. In this thesis, we explore this aspect of the system. The emphasis of the work presented is on applying concepts from inference and decision theory and information theory to provide an approach to deriving and analyzing adaptation algorithms. Limited work has been done so far on rigorously devising adaptation algorithms to suit a particular situation, and the aim of this thesis is to concretize such efforts and possibly to provide a mathematical basis for expanding it to other applications. We derive an algorithm for the adaptation of the coefficients of an equalizer when the receiver has limited or no information about the transmitted symbols, which we term the Soft-Decision Directed Recursive Least Squares algorithm. We will demonstrate connections between the Expectation-Maximization (EM) algorithm and the Recursive Least Squares algorithm, and show how to derive a computationally efficient, purely recursive algorithm from the optimal EM algorithm. Then, we use our understanding of Markov processes to analyze the performance of the RLS algorithm in hard-decision directed mode, as well as of the Soft-Decision Directed RLS algorithm. We demonstrate scenarios in which the adaptation procedures fail catastrophically, and discuss why this happens. The lessons from the analysis guide us on the choice of models for the adaptation procedure. We then demonstrate how to use the algorithm derived in a practical system for underwater communication using turbo equalization. As the algorithm naturally incorporates soft information into the adaptation process, it becomes easy to fit it into a turbo equalization framework. We thus provide an instance of how to use the information of a turbo equalizer in an adaptation procedure, which has not been very well explored in the past. Experimental data is used to prove the value of the algorithm in a practical context. / by Atulya Yellepeddi. / S.M.

Thesis (S.M.)--Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Ocean Engineering; and the Woods Hole Oceanographic Institution), 2003. / Thesis (S.M.)--Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science; and the Woods Hole Oceanographic Institution), 2003. / Includes bibliographical references (p. 73-79). / S.M.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2017. / Cataloged from PDF version of thesis. / Includes bibliographical references. / This thesis investigates the formation and subsequent motion of oceanic lithospheric plates through geophysical and petrological methods. Ocean crust and lithosphere forms at mid-ocean ridges as the underlying asthenosphere rises, melts, and flows away from the ridge axis. In Chapters 2 and 3, I present the results from partial melting experiments of mantle peridotite that were conducted in order to examine the mantle melting point, or solidus, beneath a mid-ocean ridge. Chapter 2 determines the peridotite solidus at a single pressure of 1.5 GPa and concludes that the oceanic mantle potential temperature must be -60 °C hotter than current estimates. Chapter 3 goes further to provide a more accurate parameterization of the anhydrous mantle solidus from experiments over a range of pressures. This chapter concludes that the range of potential temperatures of the mantle beneath mid-ocean ridges and plumes is smaller than currently estimated. Once formed, the oceanic plate moves atop the underlying asthenosphere away from the ridge axis. Chapter 4 uses seafloor magnetotelluric data to investigate the mechanism responsible for plate motion at the lithosphere-asthenosphere boundary. The resulting two dimensional conductivity model shows a simple layered structure. By applying petrological constraints, I conclude that the upper asthenosphere does not contain substantial melt, which suggests that either a thermal or hydration mechanism supports plate motion. Oceanic plate motion has dramatically changed the surface of the Earth over time, and evidence for ancient plate motion is obvious from detailed studies of the longer lived continental lithosphere. In Chapter 5, I investigate past plate motion by inverting magnetotelluric data collected over eastern Zambia. The conductivity model probes the Zambian lithosphere and reveals an ancient subduction zone previously suspected from surface studies. This chapter elucidates the complex lithospheric structure of eastern Zambia and the geometry of the tectonic elements in the region, which collided as a result of past oceanic plate motion. Combined, the chapters of this thesis provide critical constraints on ocean plate dynamics. / by Emily Kathryn Sarafian. / Ph. D.

Thesis (Ph. D.)--Joint Program in Marine Geology and Geophysics (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2007. / This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections. / Includes bibliographical references. / I provide constraints on mantle convection through observations of the rheology and composition of the oceanic upper mantle. Convection cannot be directly observed, yet is a fundamental part of the plate tectonic cycle. Relative motion among plates is accommodated by localized deformation at their boundaries. I demonstrate that in the ductile regime, strain localization occurs when different mineral phases are mixed together, limiting grain annealing. Upper mantle flow is by dislocation creep, resulting in seismic anisotropy due to mineral alignment. I use a shear zone in the Josephine Peridotite to quantify the relationship between mineral orientation and shear strain, providing an improved framework for the interpretation of seismic anisotropy. The upper mantle is generally assumed to be homogeneous in composition. From detailed isotopic and chemical analyses of abyssal peridotites from the Southwest Indian Ridge, I show that the mantle is heterogeneous at a range of length-scales. Abyssal peridotites recovered at ocean ridges are generally interpreted as the depleted residues of melt extraction. I find that melt-rock reaction is a significant part of the melt extraction process, modifying the composition of the lithospheric mantle. The generation of heterogeneous lithosphere provides a source for asthenospheric heterogeneity, via subduction and mantle convection. / by Jessica Mendelsohn Warren. / Ph.D.

Thesis: S.M., Joint Program in Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Mechanical Engineering; and the Woods Hole Oceanographic Institution), 2014. / Cataloged from PDF version of thesis. / Includes bibliographical references (pages 123-125). / Underwater acoustic communication is an extremely complex field that faces many challenges due to the time-varying nature of the ocean environment. Vector sensors are a proven technology that when utilizing their directional sensing capabilities allows us to minimize the effect of interfering noise sources. A traditional pressure sensor array has been the standard for years but suffers at degraded signal to noise ratios (SNR) and requires maneuvers or a lengthly array aperture to direction find. This thesis explores the effect of utilizing a vector sensor array to steer to the direction of signal arrival and the effect it has on equalization of the signal at degraded SNRs. It was demonstrated that utilizing a single vector sensor we were able steer to the direction of arrival and improve the ability of an equalizer to determine the transmitted signal. This improvement was most prominent when the SNR was degraded to levels of 0 and 10 dB where the performance of the vector sensor outperformed that of the pressure sensor in nearly 100% of cases. Finally, this performance improvement occurred with a savings in computational expense. / by Matthew Robert Lewis. / S.M.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Biology; and the Woods Hole Oceanographic Institution), 2011. / Cataloged from PDF version of thesis. / Includes bibliographical references. / The ultimate goal of early life studies of fish over the past century has been to better understand recruitment variability. Recruitment is the single most important natural event controlling year-class strength and biomass in fish populations. As evident in Georges Bank haddock, Melanogrammus aeglefinus, there is a strong relationship between recruitment success and processes occurring during the planktonic larval stage. Spatially explicit coupled biological-physical individual-based models are ideal for studying the processes of feeding, growth, and predation during the larval stage. This thesis sought new insights into the mechanisms controlling the recruitment process in fish populations by using recent advances in biological-physical modeling methods together with laboratory and field data sets. Interactions between feeding, metabolism and growth, vertical behavior, advection, predation, and the oceanic environment of larval haddock were quantitatively investigated using individual-based models. A mechanistic feeding model illustrated that species-specific behavioral characteristics of copepod prey are critically important in determining food availability to the haddock larvae. Experiments conducted with a one-dimensional vertical behavior model suggested that larval haddock should focus on avoiding visual predation when they are small and vulnerable and food is readily available. Coupled hydrodynamics, concentration-based copepod species, and individual-based larval haddock models demonstrated that the increased egg hatching rates and lower predation rates on larvae in 1998 contributed to its larger year-class. Additionally, results from these coupled models imply that losses to predation may be responsible for interannual variability in recruitment and larval survival. The findings of this thesis can be used to better manage the haddock population on Georges Bank by providing insights into how changes in the physical and biological environment of haddock affect their survival and recruitment, and more generally about the processes significant for larval fish survival. / by Colleen Mary Petrik. / Ph.D.

Thesis: Ph. D., Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Department of Biology; and the Woods Hole Oceanographic Institution), 2016. / Cataloged from PDF version of thesis. / Includes bibliographical references. / To maintain the benefits of group membership, social animals need mechanisms to stay together and reunite if separated. This thesis explores the acoustic signals that dolphins use to overcome this challenge and mediate their complex relationships in a dynamic 3D environment. Bottlenose dolphins are the most extensively studied toothed whale, but research on acoustic behavior has been limited by an inability to identify the vocalizing individual or measure inter-animal distances in the wild. This thesis resolves these problems by simultaneously deploying acoustic tags on closely-associated pairs of known animals. These first reported deployments of acoustic tags on dolphins allowed me to characterize temporal patterns of vocal behavior on an individual level, uncovering large variation in vocal rates and inter-call waiting time between animals. Looking more specifically at signature whistles, a type of call often linked to cohesion, I found that when one animal produced its own signature whistle, its partner was more likely to respond with its own whistle. To better evaluate potential cohesion functions for signature whistles, I then modeled the probability of an animal producing a signature whistle at different times during a temporary separation and reunion from its partner. These data suggest that dolphins use signature whistles to signal a motivation to reunite and to confirm identity prior to rejoining their partner. To examine how cohesion is maintained during separations that do not include whistles, I then investigated whether dolphins could keep track of their partners by passively listening to conspecific echolocation clicks. Using a multi-pronged approach, I demonstrated that the passive detection range of echolocation clicks overlaps with the typical separation ranges of Sarasota mother-calf pairs and that the amount of time since an animal was last able to detect a click from its partner helped explain its probability of producing a signature whistle. Finally, this thesis developed a portable stereo camera system to study cohesion in situations where tagging is not possible. Integrating a GPS receiver, an attitude sensor and 3D stereo photogrammetry, the system rapidly positions multiple animals, grounding behavioral observations in quantitative metrics and characterizing fine-scale changes that might otherwise be missed. / by Nicholas Blair Wootton Macfarlane. / Ph. D.