Association mapping (AM), based on linkage disequilibrium, is a complementary strategy to traditional quantitative trait loci (QTL) mapping for describing associations between genotypes and phenotypes in crop plants. Yellow endosperm colour, an important quality trait in durum wheat (<i>Triticum turgidum L. var. durum</i>), was studied to determine the potential of AM to (1) identify previously reported QTL using a genome wide scan and (2) to determine allelic association of the phytoene synthase 1 (Psy1) gene using a candidate gene analysis. At present, a number of QTL for endosperm colour have been identified, and phytoene synthase, the initial enzyme of the carotenoid biosynthetic pathway, has been associated with QTL on the group 7 chromosomes which are considered to play a significant role in expression of yellow pigment concentration. CIE 1976 b*, a light reflectance measurement, and water-saturated butanol extracted pigments were assessed on a collection of 93 elite accessions from a variety of geographic origins, and genotyped with 245 markers. Population structure was assessed using genetic distance and Bayesian model based approaches, identifying five sub-populations consistent with breeding origin and pedigree. Association analysis identified significant associations with yellow endosperm colour on all chromosomes, including several previously identified QTL as well as new regions for genomic dissection. Pairwise LD mapping of Psy1-B1 and Psy1-A1 located the genes to chromosomes 7B and 7A respectively, to regions which have previously been identified for yellow pigment concentration QTL. The results of this study indicate that AM can be used to complement traditional QTL mapping techniques, and identify novel QTL for further study.

Yellow pigment (YP) concentration is an important quality trait in durum wheat (<i>Triticum turgidum</i> L. var <i>durum</i>) and is comprised primarily of carotenoids. The main objective of our study was to measure the accumulation of carotenoids during the grain fill period to improve our understanding of the physiological basis for differences among durum wheat cultivars. Thirteen cultivars and breeding genotypes with large variation in total YP concentration (<6 µg g-1 to >15 µg g-1) were studied. Spikes were sampled from replicated field plots in 2007 and 2008 near Saskatoon and Swift Current, Saskatchewan, Canada, at 14, 21, 28 and 35 days after heading (DAH). The remainder of each plot was combined at grain maturity for YP and carotenoid analysis. Carotenoids were extracted with 1:1 methanol:dichloromethane (0.1% BHT) and quantified with HPLC. <i>Trans</i> (E)-lutein was the predominant carotenoid at maturity and was detected at 14 DAH in all genotypes. The rate and duration of E-lutein accumulation was variable among genotypes expressing high, intermediate and low YP. The accumulation of all carotenoids was lowest in genotypes expressing low YP, and suggests rate limitations early in the carotenoid biosynthetic pathway. E-zeaxanthin concentrations were highest in mature grain, but no significant differences were detected among genotypes. However, the ratio of E-zeaxanthin to E-lutein was inversely correlated with total YP, suggesting that the â,å branch of lycopene cyclization is favoured over the â,â branch in high-YP genotypes. These results provide insights to the regulation of the carotenoid biosynthetic pathway during grain fill stage in durum wheat and will facilitate breeding for higher carotenoid concentration.

Association mapping (AM), based on linkage disequilibrium, is a complementary strategy to traditional quantitative trait loci (QTL) mapping for describing associations between genotypes and phenotypes in crop plants. Yellow endosperm colour, an important quality trait in durum wheat (<i>Triticum turgidum L. var. durum</i>), was studied to determine the potential of AM to (1) identify previously reported QTL using a genome wide scan and (2) to determine allelic association of the phytoene synthase 1 (Psy1) gene using a candidate gene analysis. At present, a number of QTL for endosperm colour have been identified, and phytoene synthase, the initial enzyme of the carotenoid biosynthetic pathway, has been associated with QTL on the group 7 chromosomes which are considered to play a significant role in expression of yellow pigment concentration. CIE 1976 b*, a light reflectance measurement, and water-saturated butanol extracted pigments were assessed on a collection of 93 elite accessions from a variety of geographic origins, and genotyped with 245 markers. Population structure was assessed using genetic distance and Bayesian model based approaches, identifying five sub-populations consistent with breeding origin and pedigree. Association analysis identified significant associations with yellow endosperm colour on all chromosomes, including several previously identified QTL as well as new regions for genomic dissection. Pairwise LD mapping of Psy1-B1 and Psy1-A1 located the genes to chromosomes 7B and 7A respectively, to regions which have previously been identified for yellow pigment concentration QTL. The results of this study indicate that AM can be used to complement traditional QTL mapping techniques, and identify novel QTL for further study.

Yellow pigment (YP) concentration is an important quality trait in durum wheat (<i>Triticum turgidum</i> L. var <i>durum</i>) and is comprised primarily of carotenoids. The main objective of our study was to measure the accumulation of carotenoids during the grain fill period to improve our understanding of the physiological basis for differences among durum wheat cultivars. Thirteen cultivars and breeding genotypes with large variation in total YP concentration (<6 µg g-1 to >15 µg g-1) were studied. Spikes were sampled from replicated field plots in 2007 and 2008 near Saskatoon and Swift Current, Saskatchewan, Canada, at 14, 21, 28 and 35 days after heading (DAH). The remainder of each plot was combined at grain maturity for YP and carotenoid analysis. Carotenoids were extracted with 1:1 methanol:dichloromethane (0.1% BHT) and quantified with HPLC. <i>Trans</i> (E)-lutein was the predominant carotenoid at maturity and was detected at 14 DAH in all genotypes. The rate and duration of E-lutein accumulation was variable among genotypes expressing high, intermediate and low YP. The accumulation of all carotenoids was lowest in genotypes expressing low YP, and suggests rate limitations early in the carotenoid biosynthetic pathway. E-zeaxanthin concentrations were highest in mature grain, but no significant differences were detected among genotypes. However, the ratio of E-zeaxanthin to E-lutein was inversely correlated with total YP, suggesting that the â,å branch of lycopene cyclization is favoured over the â,â branch in high-YP genotypes. These results provide insights to the regulation of the carotenoid biosynthetic pathway during grain fill stage in durum wheat and will facilitate breeding for higher carotenoid concentration.