Thesis (Ph. D.)--University of British Columbia, 1998. / Includes bibliographical references (leaves 94-101).

Thesis (M. Sc. (Ichthyology))--Rhodes University, 2003.

Thesis (Ph. D.)--University of Western Australia, 2004. / Title from PDF title page (viewed on July 9, 2005). Includes bibliographical references (p. 166-182).

Thesis (M.S.)--Rhodes University, 2003. / Title from PDF t.p. (viewed on June 9, 2006). Includes bibliographical references (p. 143-163).

Thesis--PlanB (M.S.)--University of Wisconsin--Stout, 2003. / Field problem. Includes bibliographical references.

The available literature on abalone nutrition was synthesised and the prospects for developing a complete pelleted dry feed for Haliotis midae evaluated. The similar body compositions, digestive structures, enzyme activity, acceptance of a wide variety of feed ingredients and comparable growth performance on formulated diets of various abalone species suggests that they have similar nutritional requirements. Abalone also appear to be similar to other farmed monogastric animals in that digestion is primarily extracelluar and they possess a large, muscular crop and stomach. Abalone energy metabolism is carbohydrate based. They are capable of digesting high levels of dietary protein but their ability to utilise fat is limited. Abalone have been shown to consume predictable amounts of dry feed which is efficiently converted into body weight. Efficiency indices of utilisation of formulated feeds, such as feed conversion ratio, protein efficiency ratio, net protein utilisation and apparent digestibility have been successfully applied to abalone. It was concluded that the prospects for developing complete diets for H. midae using a conventional animal feed science model were good. The ability of H. midae to utilise a range of proteins which had potential for inclusion in practical diets was investigated. Five protein rich ingredients, namely, casein, fishmeal, soya oil cake, Spirulina, and torula yeast, were fed to H. midae in semi-purified diets. Two algal diets, fresh Plocamium corallorhiza and dried Ecklonia maxima were fed as controls. Abalone fed on fishmeal and Spirulina based diets displayed significantly higher growth rates than diets containing soya oil cake, torula yeast, casein and E. maxima. Growth rates of abalone fed with P. corallorhiza were significantly lower than all other diets. All artificial diets yield lower feed conversion ratios (0.7-1.8) and higher protein efficiency ratios (3.3-6.5) ratios than the seaweed control diets (FCR = 2.8-3.4; PER = 2.2-3.0). The results indicated that fishmeal and Spirulina were the most suitable proteins for inclusion in practical diets for H. midae. The effect of protein level on growth rate and nutritional indices was evaluated by feeding starch bound, fishmeal based diets containing 27, 32, 37, 42 and 47% protein to juvenile H. midae. Weight gain was positively related to the level of dietary protein, increasing by 18% between 27% and 47% protein. Protein efficiency ratio declining from 3.2 to 2.3 with an increasing dietary protein content. Feed consumption rate was approximately 1% of body weight per day for all diets. Post-weaning abalone (ca. lOmm shell length, 0.2g) differed from larger juveniles (ca. 35mm, 8g) in their response to varying proportions of dietary protein and energy. The smaller animals appeared to have a lower protein requirement and poorer ability to utilise lipid than the larger juveniles. Proximate analyses revealed that the levels of protein, lipid and carbohydrate in abalone soft tissue increased with increasing dietary levels of these nutrients. Larger juveniles contained significantly higher levels of protein and carbohydrate, but lower levels of lipid, ash and moisture, than the smaller post-weaning abalone. The assimilation efficiency of [U-¹⁴C]-arginine by H. midae fed diets enriched with [U-¹⁴C]-arginine was only 0.45%. Furthennore, supplementation of diets with graded levels of crystalline arginine did not have any effect on growth rates. It was concluded that the prospects for defining the quantitative amino acid requirements of H. midae using crystalline amino acids are not promising. Rates of gastric evacuation and enzyme secretion were monitored in juvenile H. midae fed an extruded, fishmeal based dry feed. Gut fullness peaked 6h after feed was offered and the bulk of feed consumed was digested within 24 h. Enzyme secretion appeared to begin with the onset of feeding and continued for at least 6h after peak gut fullness was attained. Protease activity increased significantly following ingestion but amylase activity was maintained at a more or less constant level. A low level of lipase activity was observed suggesting that the ability of H. midae to digest fat is limited. The growth rate of H. midae fed an extruded, fishmeal based feed increased with increasing temperature between 12°C and 20°C. Between 20°C and 24°C a marked decline in growth rate accompanied by a deterioration in feed conversion and increased mortality was observed. Consumption of a dry pelleted feed was shown to be a function of body size and temperature. Based on these data a model which predicts a daily ration for H. midae was developed. The present study showed that H. midae efficiently utilises extruded dry feeds containing conventional feed ingredients. Although technical difficulties were encountered in measuring apparent digestibility, it was concluded that the prospects for developing practical diets according to established nutritional principles are promising.

A physiological study was carried out to determine the effects of temperature, quantity of food fed, feeding activity and size class on the oxygen consumption and ammonia production of the South African abalone Haliotis midae L.. A set of intermittent flow respirometer chambers were used in a recirculating system to measure the oxygen consumption rates of fed (postprandial) and unfed (postabsorptive) abalone for three different size classes (15, 30, and 50mm) at three different temperatures (16°, 20° and 23°C) over a 24 hour period. Ammonia production rates and food consumption rates were simultaneously determined. Oxygen consumption and Ammonia production rates per gram abalone were linear functions of abalone size, temperature, and mass of food consumed. Oxygen consumption and ammonia production rates were found to increase proportionally to temperature and in inverse proportion to abalone size. These rates were significantly higher for fed as opposed to unfed abalone. Equations were derived to predict oxygen consumption and ammonia production for fed and unfed animals for a range of temperatures and size classes of abalone. A 96h LC50 lethal toxicity test for exposure to ammonia established 1.08mg.1⁻¹ of unionised ammonia as the lethal limit. A test on the long term effects on growth of acute exposure (12h) to various sublethal concentrations of ammonia showed no significant effects on growth for concentrations below 0.88 mg.1⁻¹. A safe chronic exposure level of 0.02 mg.1¹ NH₃-N was used to predict optimal flow rates required per kilogram of abalone in a rearing tank over a range of size classes and temperatures. The physiological and biological requirements of H. midae and the implications of this knowledge for rearing tank management and optimal design are discussed.

This study investigated the feasibility of ranching the abalone Haliotis rubra (Leach) and Haliotis laevigata (Donovan) on concrete artificial reefs at a site chosen by industry investors on silty bottom off Altona Beach, Port Phillip Bay, Victoria, Australia. The study started from the premise that artificial reef deployment combined with abalone stock enhancement may achieve the dual purpose of habitat and stock improvement. It evaluated the hydrodynamics of the site in relation to artificial reef structural stability and drift algal transport, the development and ecology of the artificial reef assemblage, and abalone enhancement by seeding the reefs with hatchery juvenile abalone and transplanting adult broodstock abalone. Despite a scarcity of reports on culturing abalone on artificial reef, a literature review examined broadly the functions of artificial reefs, particularly in the context of abalone enhancement, and the relationship between artificial reefs, hydrodynamics and ecology. The major finding was that the success of artificial reef projects is highly dependent on the environment of the chosen site, and that preliminary studies are essential to predict their likely success. This consideration alone provided strong justification to undertake this study. The topography at the Altona site was generally flat, with natural patches of low basalt boulder reef, offering low habitat complexity, yet supporting a diverse range of flora and fauna, including a low-density wild stock of H. rubra. Water depth was a mean of 3.3 m at low tide and 4.4 m at high tide. A single, uncomplicated, concrete artificial reef of H-shape design, was tested as abalone habitat. The hydrodynamic analysis confirmed previous studies of Port Phillip Bay, with mild current speeds of mean 0.045 m.s-1, and maximum-modelled wave height (H1/3) of 1.21 m and period (T1/3) of 4.51 sec. Water temperature ranged from 9.9ºC during July to 23.8ºC during January, with salinity averaging of 35.5 ppt. The site had a low probability of receiving drift algae, necessary as a food source for abalone, because of its geographic location, potentially affecting ranch productivity. Ecological monitoring of the three-year old artificial reef shows complex changes in the flora and fauna over time, particularly in respect of the sessile fauna. Key differences between the artificial reef and a nearby natural reef community were: lower cover of corallines and late colonisers, such as sponges. High levels of sedimentation were recorded at the Altona site. Hatchery juvenile H. laevigata, with mean survival of 15% after two years and a mean annual growth rate of 39 mm, showed the most promise for outplanting. In comparison, for hatchery juvenile H. rubra, mean survival was 9% after three years and mean annual growth rate was 22 mm. No natural recruitment of H. laevigata was recorded on artificial reef despite transplants of adult broodstock on the reefs. Natural recruitment of H. rubra was also low and insufficient to reliably contribute to abalone ranch stock. Having examined the hydrodynamic, ecological and enhancement attributes of the Altona site, the study concluded that the site was marginally viable for abalone ranching, and that an alternative site near Werribee, 20 km further southwest, had superior attributes for growth and survival of abalone.

Thesis (MSc)--Stellenbosch University, 2015. / ENGLISH ABSTRACT: Linkage disequilibrium (LD) is defined as the non-random association of alleles at two or more loci within a population. It is sensitive to a variety of locus-specific- and demographic factors, and can thus provide much insight into the micro-evolutionary factors that have shaped species of interest. It can also be exploited to identify the genomic regions determining complex traits of interest, which can then be applied as performance evaluation markers in marker-assisted selection (MAS). The South African abalone, Haliotis midae, supports a rapidly developing aquaculture production industry, in which genetic improvement potential is high. This species also represents an opportunistic model for studying the effects of early domestication in a shellfish species. The aim of this study was therefore to quantify and characterise levels of genome-wide LD within the South African abalone, and to demonstrate its utility within population genetic investigations and the characterisation of complex traits. Estimates of LD between 112 mapped microsatellite markers within wild and cultured H. midae revealed that levels of LD in abalone are high relative to other aquaculture species. This was attributed primarily to small effective population sizes produced by a combination of natural- and anthropogenic factors. The decay of LD with genetic distance was evident in both cultured cohorts, but almost absent in wild cohorts, likely reflecting the differences in size, age and sampling of wild populations relative to cultured. Putative evidence for the effects of recombination, selection, and epistasis were also evident in distinctive locus-specific patterns of LD on some of the linkage groups, many of which could represent the effects of domestication. The effects of selection associated with the domestication event were further investigated using a candidate locus LD mapping approach to determine the proportion of candidate loci under selection associated with artificial selection for faster growth rate in cultured abalone. Two loci (15%) were found to be significantly associated with differences in size of individual animals, both of which could be linked with genes potentially involved in growth and development. These markers could therefore find application in MAS programmes for abalone. Several promising candidates for natural selection were also identified based on similarity with known genes. As the latter represented the majority, natural selection, rather than artificial selection, appears to be predominant during the early stages of domestication in abalone. While some conclusions within the current study were speculative, both the direct and indirect applications of LD were clearly demonstrated. Linkage disequilibrium data can provide a unique perspective on many of the commonly used population genetic estimates, and is therefore of great value in population genetic investigations. Furthermore, these results also highlighted the effectiveness of the candidate locus approach in species with both limited molecular resources and extensive LD. / AFRIKAANSE OPSOMMING: Koppelingsonewewig (KO) word gedefinieer as die nie-lukrake assosiasie van allele by twee of meer lokusse binne 'n populasie. Koppelingsonewewig is sensitief vir 'n verskeidenheid van lokus-spesifieke- en demografiese faktore, en kan dus insiggewend wees m.b.t. mikro-evolusionêre faktore wat spesies van belang beïnvloed het. Dit kan ook benut word om die genoom-gebiede onderligend tot komplekse eienskappe te bespeur; wat dan aangewend kan word vir prestasie-evaluering m.b.v. merkerbemiddelde seleksie (MBS). Die Suid-Afrikaanse perlemoen, Haliotis midae, ondersteun 'n vinnig ontwikkelende akwakultuur produksie bedryf, waarin genetiese verbeteringspotensiaal hoog is. Hierdie spesie verteenwoordig ook 'n opportunistiese model vir die bestudering van die gevolge van vroeë domestiseering in 'n skulpvis spesie. Die doel van hierdie studie was dus om vlakke van genoom-wye KO binne die Suid-Afrikaanse perlemoen te kwantifiseer en te karakteriseer, en om die toepassing hiervan binne populasiegenetiese ondersoeke en die karakterisering van komplekse eienskappe te demonstreer. Ramings van KO tussen 112 gekarteerde mikrosatelliet-merkers binne wilde en gekultiveerde H. midae het aan die lig gebring dat die vlakke van KO in perlemoen hoog was, in vergelyking met ander akwakultuur spesies. Dit word hoofsaaklik toegeskryf aan klein effektiewe populasiegroottes wat deur 'n kombinasie van natuurlike- en antropogeniese faktore teweeg gebring word. Die verval van KO met genetiese afstand was duidelik waarneembaar in gekultiveerde kohorte, maar amper afwesig in die wilde kohorte, waarskynlik a.g.v. verskille in populasiegrootte, ouderdom, en streekproef-neemings metodieke van die verskeie populasies. Vermeende bewyse vir die gevolge van rekombinasie, seleksie en epistase kon ook gesien word a.g.v. lokus-spesifieke patrone van KO op sommige van die koppelingsgroepe, moontlik ‘n gevolg van domestisering. Die gevolge van seleksie wat verband hou met die domestiseringsgebeurtenis is verder ondersoek m.b.v 'n kandidaat-lokus KO karteringsbenadering om die verhouding van kandidaat lokusse wat geassosieer is met kunsmatige seleksie (vir vinniger groeikoers in perlemoen) te bepaal. Twee lokusse (15%) was beduidend geassosieer met verskille in grootte tussen individuele diere. Beide van die lokusse was gekoppel met gene wat potensieel betrokke is by groei en ontwikkeling. Hierdie merkers kan dus moontlik aangewend word in MBS programme vir perlemoen. Verskeie belowende kandidaat lokusse vir natuurlike seleksie is ook geïdentifiseer gebaseer op ooreenkoms met bekende gene. Gegewe dat die laasgenoemde die meerderheid van die merkers verteenwoordig, kan daar afgelei word dat natuurlike seleksie, eerder as kunsmatige seleksie, oorheersend is in die vroeë stadia van domestisering in perlemoen. Terwyl sommige gevolgtrekkings binne die huidige studie spekulatief was, is beide die direkte en indirekte toepassings van KO duidelik gedemonstreer. Koppelingsonewewig-data kan 'n unieke perspektief gee op baie van die algemeen gebruikte populasie genetiese skattings, en is dus van groot waarde in populasie genetiese ondersoeke. Verder demonstreer hierdie resultate ook die doeltreffendheid van die kandidaat lokus benadering in spesies met beide beperkte molekulêre hulpbronne en uitgebreide KO.

Magister Scientiae (Biodiversity and Conservation Biology) - MSc (Biodiv and Cons Biol) / Abalone are among the most expensive and sought-after seafood subjects. In South Africa, Haliotis midae is the only commercially significant abalone species and it has become increasingly sold on the global market. The importance of abalone as a mariculture subject has triggered extensive research into maximizing production, with particular emphasis on optimizing growth rates. This study aimed to assess the growth performance of Haliotis midae relative to 1) standard pelleted feed, and 2) kelp-inclusive pelleted feed. I assessed feed stability of the dietary treatments and growth parameters associated with abalone weight gain. Temperature and time of feed submersion were found to significantly affect feed stability. Although there were no significant differences in water stability between feeds, the kelp-inclusive feed produced significantly lower total suspended solids (TSS) than the standard pelleted feed at upper time-temperature combinations.