Lenses in virtual reality headsets make it possible to put displays close to users' eyes and they provide users with wider field of view. However, they also distort the displayed image. Providing we know the lens distortion properties, it is possible to compensate for the distortion by displaying an image that is distorted in the opposite way. This thesis focuses on measurement of the distortion for an arbitrarily complex lens, while also considering chromatic aberration. A system capable of measuring of the distortion using just a camera attached to the virtual reality headset is designed and implemented. It is based on pattern detection and comparison of relative positions of points on the display and their correspondences in the distorted image. The result is a 2D distortion map that can be used to transform images such that they appear undistorted to the virtual reality headset users.

Aneuploidy frequency increases with advanced female age and results in infertility or live birth of affected individuals. Aneuploidies occur mainly during female meiosis. Polar bodies biosied from oocytes after first and second meiosis were analyzed using array comparative genomic hybridization testing for all chromosomes. More than a half of tested oocytes were aneuploid. Aneuploidies as a result of nondisjunction in meio-sis II were slightly more frequent than meiosis I errors. Premature chromatide predivisi-on was absolutely predominant among errors occurring during meiosis I. Despite the fact that aneuploidies were detected for each chromosome, most aneuploidies were detected for small acrocentric chromosomes. Possible mechanisms of aneuploidy formation are discussed in context of information obtained by the means of animal biotechnologies at different species of mammals.

The focus of this diploma thesis is on mosaic numerical and structural chromosomal aberrations. In its theoretical part, general problems of mosaicism, its phenotypic effect, mechanisms of origin, related epigenetic modifications, and diagnostic options are described. The methodical part of the thesis then primarily refers to fluorescence in situ hybridization (FISH) and its application in the diagnostics of mosaicism. This method was used in the examination of 29 patients with numerical as well as structural abnormalities of autosomes or gonosomes with proven or suspected mosaicism. On the basis of this analysis, possible errors of measurement were determined and data for statistic evaluation were retrieved. For the examinations of three patients an alternative of the comparative genomic hybridization, the array CGH technique, was applied. The FISH method, although being based on random selection and human factor, proved sufficient sensitivity as well as specificity in the field of low-frequency mosaicism diagnostics. The main critical factors responsible for potential misinterpretation of the data arose from inherent characteristics of the biological material, incorrect targeting of the analysis, probe instability, bleed through effect and absence of mitosis during the structural aberrations analysis.

Clonal evolution is a multistep process characterized by progression of the disease, adverse prognosis and shortening of overall survival. The aim of the dissertation was a detailed characterization of identified changes in patients with myelodysplastic syndromes (MDS) and clonal evolution and evaluation of their prognostic impact. We performed detail cytogenomic analyses in 36/469 (8%) patients with confirmed linear clonal evolution. We described 57 primary abnormalities (32% MDS-specific) at the time of diagnosis, the most frequent was deletion of long arm of chromosome 5. We proved 156 secondary aberrations (21% MDS-specific) during the course of the clonal evolution, the most frequent were trisomies/tetrasomies of chromosome 8. We identified acquired uniparental disomies (aUPD) in 19% of patients. In MDS-specific aUPDs 4q, 11q and 17p, we proved homozygous mutations of TET2, c-CBL and TP53 genes. We found a statistically significant difference in overall survival between the groups of patients divided according to their diagnostic cytogenomic findings. In patients with clonal evolution before treatment 54% of aberrations were gains of whole chromosomes, by contrast 44% of abnormalities identified in patients with clonal evolution after treatment were monosomies or deletions. The study of clonal...

Chromosomal aberrations are common causes of abnormal development of fetuses leading to the birth of malformed indvidual or to the intrauterine death. Half of miscarriages in the first trimester and a third in the second trimester are caused by fetal chromosomal abnormalities, mainly aneuploidies. If fetus is abnormally developed, invasive prenatal cytogenetic diagnosis should be recommended. Positive cytogenetic finding can be reason for induced abortion till the end of 24th week of gestation. We investigated 81 miscarriages, 46 fetuses from induced abortions and 80 fetuses with abnormal development from ongoing pregnancies. G-banding analysis was used as the main method for investigating miscarriages. Genomic DNA isolated from abnormally developed fetuses was screened by array CGH technique. We found 43,75 % chromosomal abnormal miscarried fetuses, majority of them with numerical aberrations (91,4 %). In group of induced abortions, 25,71 % fetuses carried chromosomal abnormality. The lowest rate 11,67 % of chromosoal aberrations was detected in group of prenatally diagnosed fetuses from ongoing pregnancies. Array CGH detected submicroscopic aberrations in 13,41 % fetuses with ultrasound findings. All together 25,74 % microscopic and causal submicroscopic chromosomal abnormalities were found to be...

Changes in chromosome number and structure may cause serious diseases. Cytogenetic tests leadin to set of karyotype are done for detecting these abnormalities. Chromosomes are visualised with proper methods and karyotype is made up most often. Manual karyotyping is time-consuming and expensive task. Because of this, researchers have been developing automated karyotyping systems. Karyotyping systems classify chromosomes into classes based on their characteristic features. Overlapping and bent chromosomes are limitations for automatic classification since they ocur at almost every mitosis. Accuracy and reliability of karyotyping systems still depend on the human intervention. Overcoming of these problems and development of fully automated system is the aim of modern approaches.

This work is focussed on different unwanted effects that damage a digitally acquired image. An image acquired using a digital camera can suffer from a series of defects. First, the noise is concerned. It occures due to discretisation. Next, there are the defects including vignetting, radial image distortion, chromatic aberration. In my thesis I also worked on backlight image compensation and panorama creation from an image sequence. For backlight images we need to increase the brightness in the dark parts of the image, so that the details became more visible. At panorama creation we are careful about brightness evenness in partial images, which is usually not conserved and consequently we try to find a suitable boundary-line to connect images and smooth it. The fundamental part of my work was writing the algorithms that are able to compensate these defects at least partly. For this aim I took use of the Matlab environment.

Carriers of apparently balanced chromosomal aberrations (BCA) are usually phenotypically normal. However, it has been estimated that up to 27% of these BCA may be associated with an abnormal phenotype, most often caused by cryptic imbalances at the breakpoints, gene disruption by the breakpoint or via the position effect. In contrast to conventional karyotyping, molecular cytogenetic techniques enable more detailed BCA characterization and better correlation between genotype and phenotype of the patient. The aim of this thesis was to evaluate the presence of copy number variants (CNVs) at breakpoints or elsewhere in the genome in patients with abnormal phenotype who carry de novo or inherited BCA. 54 BCA were investigated using array CGH (20 de novo cases, 27 inherited and 7 cases of unknown origin) including 32 reciprocal translocations, 6 robertsonian translocations, 12 inversions and 4 complex chromosomal rearrangements. If possible, the parents were also examined to ascertain the inheritance of the relevant CNVs. In order to specify microarray findings or exclude gene disruption, FISH was used in selected patients. Among the patients included, in 31,5% (17/54) at least one (in 8 patients more than one) significant CNV was detected. Four cases carried cryptic imbalances only at the breakpoints,...

This diploma thesis deals with a design modification of detection part of the laboratory instrument for measuring the topography of rough surfaces – laser goniometric scatterometer (SM II). Design modification is based on replacement of so far used detector instead for the detector of higher quality with better measurement parameters. The first part of the diploma thesis contains theoretical basics, which are necessary to understand the relationship between scalar diffraction theory and scattering measurements of monochromatic light. The emphasis is on the importance of choosing appropriate detection coordinates, which are affecting the aberrations of detected diffracted light. The practical part is dedicated to improving the sensitivity of the detection part of the scatterometer SM II that is used in The laboratory of coherence optics at IFE FME BUT. This part justifies the choice of the detector which predetermines both the use of optical elements and the overall design of the detection part as the goniometer.

This diploma thesis considers with human vision and human eye. It takes into account both anatomic view and physiology standpoints. There is, among others, description of optical processes occurring in the organ of the sight mentioned in the work. The human eye suffers from optical defects – aberrations – that are able to degrade the retinal image and ultimately visual performance. Substantial part of the text deals with these aberrations. There are also analysed possibilities of their elimination using an inverse aberration. Work also assumes opportunity to optical modeling to calculate distorted images from ocular aberration data. Practical part consist of software application created using Matlab environment ver. 6.5 as well as full documentation. The examples of outputs procured using this application are published. Both software application and detail documentation are included on CD.