The versatility of N-heterocyclic carbenes (NHCs) is demonstrated by numerous practical applications in homogeneous transition metal catalysis, organocatalysis and materials science. There remains a paucity of electropositive metal NHC complexes and so this chemistry is poorly developed with respect to that of the late transition metal and main group elements. This thesis describes the synthesis of new alkoxy-tethered NHC proligands, their use in the synthesis of reactive metal amide and metal alkyl complexes, and finally small molecule activation using these complexes. Chapter One introduces NHCs and discusses their use as supporting ligands for early transition metal and f-block complexes. Small molecule activation using organometallic complexes is examined alongside the use of electropositive metal NHC complexes in catalysis. Chapter Two contains the synthesis and characterisation of new alkoxy-tethered NHC proligands and a variety of electropositive MII (M = Mg and Zn), MIII (M = Y, Sc, Ce and U) and MIV (M = Ce and U) amide complexes. X-ray diffraction studies and a DFT study are used to probe the extent of covalency in the bonding of the MIV complexes. Chapter Three investigates the reactivity of the amide complexes prepared in Chapter Two. The MII complexes are shown to be initiators for the polymerisation of raclactide into biodegradable polymers. The MIII complexes are used to demonstrate additionelimination reactivity of polar substrates across the M-Ccarbene bond which allows the formation of new N-E (E = Si, Sn, P or B) bonds. Treatment of the UIII silylamide complex U(N{SiMe3}2)3 with CO results in the reductive coupling and homologation of CO to form an ynediolate core -OC≡CO- and the first example of subsequent reactivity of the ynediolate group. The MIV complexes are used to examine the potential for forming MIV cationic species and alkyl complexes. Chapter Four examines the synthesis of MIII (M = Ce and Sc) aminobenzyl complexes and MIII (M = Y, Sc and U) neosilyl and neopentyl alkyl complexes. The addition-elimination reactivity discussed in Chapter Three is extended to include C-E bond formation (E = Si, Sn, P, B, I or C). Chapter Five provides overall conclusions to the work presented within this thesis. Chapter Six gives experimental and characterising data for all complexes and reactions in this work.

Les ADAMTS (a desintegrin and metalloprotease with thrombospondin type 1 repeat) sont des métallopeptidases sécrétées dans le milieu extracellulaire ayant comme fonction le clivage de différents substrats de la matrice extracellulaire tel le propeptide en N-terminal du collagène, l'aggrécan, ainsi que le von Willebrand factor retrouvé dans le plasma. Une mutation ou un dérèglement d'ADAMTS2, 5 et 13 sont directement responsable du syndrome de Ehlers-Danlos de type VII C, l'arthrose et la purpura thrombotique thrombocytopénique respectivement. De plus, ADAMTS1 et 8 sont reconnues pour avoir des propriétés anti-angiogéniques qui s'avèrent d'un potentiel thérapeutique contre la progression des tumeurs. La biosynthèse et les mécanismes menant à la pleine activité biologique de ces peptidases sont peu connus et ont été étudiés dans cet ouvrage. Nous avons démontré que les ADAMTS sont initialement synthétisées sous forme de zymogènes qui subissent un clivage protéolytique à la jonction de leur prodomaine et de leur domaine catalytique par différentes sérines peptidases de la famille des pro-protéines convertases de type subtilisine. Des études de marquages métaboliques des différents ADAMTS transfectées dans la lignée cellulaire CHO RPE.40 déficiente en furine ont dévoilé que ADAMTS1, 5, 7 et 9 sont toutes clivées par la furine. D'autres convertases clivent de façon moins efficace que la furine les prodomaines des ADAMTS (PACE4 et PC6B clivent ADAMTS1, PC6B et PC7 clivent ADAMTS7, PC5A Clive ADAMTS9 et PC7 Clive ADAMTS5). Malgré la présence de plusieurs sites consensus de clivage par la furine dans les prodomaines des ADAMTS, des études de mutagenèse dirigée abolissant les différents sites ont démontré que le site plus près du domaine catalytique est préférentiellement clivé par la furine. Le clivage du prodomaine d'ADAMTS1 et 7 s'effectue au réseau du trans -Golgi. Toutefois, des études de marquage à la biotine des protéines de la surface cellulaire démontrent que ADAMTS7 semble aussi être clivée à la surface de la cellule. ADAMTS5 est strictement maturée dans l'espace extracellulaire, soit à la surface cellulaire ou dans le milieu extracellulaire, ce qui révèle un nouveau mécanisme d'activation par la furine pour des substrats endogènes. En outre, ADAMTS9 est clivée à la surface de la cellule par la furine, mais contrairement à la presque totalité des substrats de la furine, celle-ci inactive ADAMTS9. En somme, il existe plusieurs mécanismes d'activation des ADAMTS : activation intracellulaire ou extracellulaire et inactivation extracellulaire par les convertases. La présence, dans les prodomaines des ADAMTS, d'acides aminés conservés à travers les membres de cette famille d'enzyme nous amène à penser qu'ils pourraient jouer un rôle important dans leur maturation. La mutation des acides aminés conservés des motifs CXYXG et YFIXPL d'ADAMTS1 et 9 ainsi que des sites de N-glycosylation d'ADAMTS9 ont grandement affecté la sécrétion de l'enzyme mature. Cette observation permet de conclure qu'outre le site consensus de clivage par la furine, des motifs conservés ainsi que la glycosylation des prodomaines sont impliqués dans la biosynthése des ADAMTS. La découverte de nouveaux mécanismes d'activation par la furine a une signification importante dans le domaine d'activation de précurseurs. L'activation extracellulaire d'ADAMTS5, l'enzyme responsable de la dégradation du cartilage, génère une cible thérapeutique potentielle pour un traitement futur de l'arthrose.

Les évènements géologiques de surface, comme le volcanisme ou les séismes, sont le fruit d'une dynamique qui vise à dissiper la chaleur interne de notre planète. Dans le manteau terrestre, les roches sont déformées plastiquement dans des conditions extrêmes de pression, de température et de vitesse de déformation. Malgré les récentes avancées expérimentales, il est impossible de reproduire de telles conditions de déformation en laboratoire. C'est pourquoi nous proposons, dans ce travail de thèse, une approche numérique, basée sur la modélisation multi-échelle de la plasticité, des conditions du laboratoire à celles qui caractérisent le manteau terrestre. Nous avons choisi d'appliquer cette méthode à MgO, phase importante du manteau inférieur.À partir des propriétés de cœur des dislocations, nous avons utilisé la théorie des double-décrochements afin de décrire la mobilité d'une dislocation isolée en fonction de la température et de la contrainte. Nous avons ensuite implémenté, dans un code de Dynamique des Dislocations (DD), les paramètres de mobilité des différents défauts afin de décrire le comportement collectif des dislocations lors d’essais numériques de déformation. Les résultats montrent que les propriétés mécaniques de MgO dépendent fortement de la pression et de la vitesse de déformation. / Surface geological events, like volcanos and earthquakes, are due to the internal dynamics of the Earth which tends to release its internal heat. Inside the Earth's mantle, solid rocks are plastically strained under extreme conditions of pressure, temperature and strainrate. In spite of recent experimental progress, it is still impossible to reach such conditions of deformation. This is why we propose an alternative approach, based on the multi-scale modeling of plasticity, from the laboratory conditions to the Earth's mantle. We have choosen to apply our model to magnesium oxide which is a phase present in the lower mantle.From core properties, we modeled a dislocation thermally activated mobility law based on the kink pair theory. Then, we have incorporated it inside a Dislocation Dynamics code to describe the collective behaviour of dislocations throughout numerical strain experiments. Here we show that MgO mechanical properties depends significantly on pressure and strainrate.

Thesis advisor: Thomas N. Seyfried / Two major metabolic phenomena observed in cancer cells include the Warburg effect and Crabtree effect. The Crabtree effect is the in vitro inhibition of respiration by glucose. The influence of glucose on the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) of tumorigenic RAW264.7 and VM-M3 macrophage cells, as well as non-tumorigenic BV-2 microglia cells, was studied using the Seahorse XF96 extracellular flux analyzer. RAW264.7, VM-M3, and BV-2 cells incubated in glucose medium displayed a significantly lower OCR and higher ECAR compared to cells incubated in no glucose medium. Furthermore, when glucose medium was added to the RAW264.7 and BV-2 cells in real-time using the Seahorse XF96 injection ports, a rapid decrease in OCR and increase and ECAR was observed. Therefore, RAW264.7, VM-M3, and BV-2 cells display a robust Crabtree effect in vitro, as assessed by OCR and ECAR. Additionally, it is important to consider the Crabtree effect when studying in vitro energy metabolism of all cell and tissue types. It was also found that the elimination of the Crabtree effect through glucose deprivation resulted in dynamic cardiolipin (CL) fatty acid changes in VM-M3 cells. VM-M3 cells incubated in 10 mM glucose medium for four hours displayed a short-chain, saturated (immature) CL fatty acid composition, while VM-M3 cells incubated in no glucose media for four hours displayed long-chain, unsaturated (mature) CL fatty acid composition. Cardiolipin (CL) is a phospholipid highly enriched in the inner mitochondrial membrane. Mature, long-chain, unsaturated CL molecular species are involved in maintaining mitochondrial function and membrane integrity. Overall, these data suggest that CL fatty acid composition may function as a structural component of the Crabtree effect in vitro. The Warburg effect, or aerobic glycolysis, is the observation that tumor cells consume less oxygen and more glucose than normal, untransformed cells in the presence of oxygen. It has been shown that immune cells display a Warburg effect upon activation by changing their core metabolism from oxidative phosphorylation to glycolysis. In this study, it was observed that both RAW264.7 macrophage cells and BV-2 microglia cells display a significantly lower OCR and higher ECAR following LPS-activation. However, this observation is dependent on the concentration of LPS. Therefore, these data suggest that both RAW264.7 and BV-2 cells display a LPS concentration-dependent change in metabolism from oxidative phosphorylation to glycolysis upon LPS-activation in vitro. The in vitro lipid profiles that resulted from the Crabtree effect and the LPS-activated Warburg effect were also studied in the RAW264.7 cell line. The lipids phosphatidylserine (PS) and cardiolipin (CL) displayed the most robust changes in the RAW264.7 cells. Both PS and CL have been shown to be associated with cellular respiration. / Thesis (MS) — Boston College, 2016. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Biology.

Regulation of gene expression in a spatiotemporal manner specifies cellular identity. Transcription factors (TFs) bind to DNA regulatory elements to remodel chromosome structure, to recruit transcription machinery to initiate gene transcription or to prevent the assembly of such machinery to repress gene transcription, thus they lie at the heart of gene regulation. Given important roles of TFs in gene regulation, numerous attentions have been attracted for engineered transcription factors (eTFs). The recent advance of generating customized DNA-sequence specific binding domains, including transcription activator-like effectors (TALEs) and RNA-guided clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) gene Cas9, has greatly accelerated the study and application of eTFs. The eTFs with these new binding domains offer a powerful and precise approach for modulating gene expression. / Oct4 is an important TF and it plays essential roles in the formation of inner cell mass during embryogenesis, and the maintenance of embryonic stem cells in culture as well as the reinstatement of cellular pluripotency from somatic cells. / In this study, we systematically investigated the potential of TALE-TFs and CRISPR/Cas9-TFs in activating Oct4. We designed a number of TALEs and small guide RNAs (sgRNAs) targeting various regions in the mouse and human Oct4 promoters. Using luciferase assays, we found that the most efficient TALE-VP64s bound on the region −120 to −80 bp upstream of transcription start site (TSS), while highly effective sgRNAs targeted −147 to −89 bp upstream of TSS to induce high activity of luciferase reporters. This positional effect can serve as a simple guideline for designing eTFs for activating transcription from a reporter system. Next, we examined the potential of TALE-VP64 and sgRNAs to activate endogenous Oct4 transcription. We found that the positional effect was less obvious as individual eTFs exhibited marginal activity to up-regulate endogenous gene expression. Interestingly, we found that when multiple eTFs were applied simultaneously, Oct4 could be induced significantly and synergistically. This phenomenon was well supported by activation of human SOX2, KLF4, cMYC, CDH1 and NANOG by TALE-VP64s. / Using optimized combinations of TALE-VP64s, we successfully enhanced endogenous Oct4 transcription up to 30-fold in mouse NIH3T3 cells and 20-fold in human HEK293T cells. More importantly, the enhancement of OCT4 transcription ultimately generated OCT4 proteins. Furthermore, examination of different epigenetic modifiers showed that histone acetyltransferase p300 could enhance both TALE-VP64- and sgRNA/dCas9-VP64-induced transcription of endogenous OCT4. Taken together, this study demonstrated that engineered TALE-TFs and dCas9-TFs are useful tools for modulating gene expression in mammalian cells. / 基因表達調控是決定細胞命運的關鍵。轉錄因子可以結合到DNA調控序列上，以重塑染色體的結構；而且可以募集轉錄機器，以起始轉錄, 或者幹擾轉錄機器的組裝，從而抑制基因轉錄；因此，在基因表達調控過程中轉錄因子處於核心地位。由于轉錄因子在基因調控方面的重要作用，研究者們越來越多的關注人工轉錄因子的研究。DNA 序列特異性結合域的發現與發展很大程度上促進了人工轉錄因子的研究與應用。最近從TALE和CRISPR/Cas9衍生而來的人工轉錄因子給我們提供了一個強大而且精確的調控基因表達的方法。Oct4是一個重要的轉錄因子，對胚胎發育過程中內細胞團的形成，和體外培養的胚胎幹細胞的維持，以及細胞多能性的重塑等多方面都至關重要。 / 在本研究中，我們系統性地探討了TALE和CRISPR/Cas9衍生而來的人工轉錄因子在激活Oct4基因方面的潛能。我們針對小鼠和人的Oct4的啓動子設計了一序列的TALEs和sgRNAs。通過熒光素酶實驗，我們發現結合到轉錄起始位點上遊120‐80bp位置的TALE‐VP64s，或者結合到147‐89bp位置的sgRNAs可以最有效地誘導熒光素酶報告基因的表達。在激活報告基因方面，這種位置效應可以作爲一條設計人工轉錄因子的簡單原則。然後，我們進一步檢測了這些人工轉錄因子在激活內源性Oct4轉錄方面的效果。結果顯示上述觀察到的位置效應並不明顯，因爲每一單個的人工轉錄因子都幾乎不能上調內源性基因的表達。但是，當同時導入多個人工轉錄因子時，我們可以顯著地激活Oct4的表達，而且可以觀察到明顯的疊加效應。利用人工轉錄因子激活SOX2, KLF4, cMYC, CDH1和NANOG,我們進一步證明了這種疊加效應。 / 通過篩查不同的人工轉錄因子組合，我們在小鼠NIH3T3細胞系把Oct4基因的表達提供到了原來水平的30多倍，而在人的HEK293T中，提高了20多倍。更重要的是，我們可以檢測到蛋白質表達水平的提高。通過檢測不同的表觀調控因子，我們發現組蛋白乙酰化轉移酶p300可以進一步提升這些人工轉錄因子誘導的Oct4基因表達。因此，本研究表明這些人工轉錄因子是調節哺乳動物細胞內基因表達的有效工具。 / Hu, Jiabiao. / Thesis (Ph.D.)--Chinese University of Hong Kong, 2014.y066 / Includes bibliographical references (leaves 132-157). / Abstracts also in Chinese. / Title from PDF title page (viewed on 13, December, 2016). / Hu, Jiabiao. / Detailed summary in vernacular field only. / Detailed summary in vernacular field only. / Detailed summary in vernacular field only.

Catalytic, selective C-H bond activation for the oxidative hydroxylation RH → ROH of simple or complex compounds is of significant interest in synthetic organic chemistry. One of the major classes of enzymes used for C-H bond activation are cytochrome P450 monooxygenases (EC 1.14.X.X), which can promote chemo-, regio- and stereoselective oxidations under mild reaction conditions. For the current study, catalytically self-sufficient forms of biocatalyst P450cam-RhFRed were investigated. These self-sufficient P450 systems were previously created by fusing the reductase domain of P450 RhF (CYP116B2, RhFRed from Rhodococcus sp.) with the catalytic domain of P450cam (CYP101A1, Pseudomonas putida), thus mimicking the natural fusion of P450 RhF. The generation of 93 P450cam-RhFRed variants has expanded the synthetic toolbox to serve as a basis for exploring the substrate scope towards ethylbenzenes, substituted alkylbenzenes, 4-ethylphenol and (+)-pleuromutilin. To select for active mutants from this library of 93, high throughput screening methods were developed. A pooling approach was applied in order to express P450s and analyse them against a panel of non-natural substrates, such as ethylbenzene, 4-ethylphenol and (+)-pleuromutilin in whole cell biotransformation reactions. The concentration of P450 enzymes was determined using CO difference spectroscopy in whole cells. The assay was significantly improved both in terms of speed and safety by using carbon monoxide releasing molecules as a source of CO rather than the gas CO itself. These screening studies served as starting point to identify P450cam-RhFRed mutants for specific reactions. In particular, a systematic investigation of this library showed mutants that generated chiral benzyl alcohols with good enantioselectivities. To interpret these results on a structural basis, molecular dynamics simulations were used to estimate enantioselectivity of selected mutants for the regio-isomers of methylated ethylbenzene derivatives. The results from the molecular dynamics simulations were broadly consistent with experimentally determined data and identified the importance of conformational changes and flexibility of mutant-substrate complexes to enforce enantioselectivity.

*Please refer to dissertation for diagrams. / Part 1 describes the selective C(alpha)-(beta) bonds cleavage of a series of aliphatic ethers (RCH2OCH2R: R = Et, Pr, Bu, iBu and pentyl) by RhII(tmp) using PPh3 as the promoting ligand to give Rh(tmp)-alkyls bearing the C(beta)-substituent in 13-40% yields at 24°C. The rate and the yields of Rh(tmp)-alkyls decreased with increasing steric hindrance of ethers. Addition of bases such as KOtBu, CsOH.H2O and KOH as well as H2O further promoted the product yields of the reactions with n-butyl ether to 56-62%. The reaction between RhII(tmp) and the cyclic ether, oxepane, at 24°C for 1 day gave Rh(tmp)(CH2)5OCHO in 17% yield suggesting that Rh(tmp)OH is the key intermediate in the C-C cleavage step and presumably generated via the PPh3-, H2O-, and OH --assisted disproportionation of RhII(tmp).* / Secondly, the reductive dehydrogenation of Rh(tmp)H to RhII(tmp) was also observed. Rh(tmp)H reacted with KOH in benzene-d6 at 100°C for 1 hour to give RhII(tmp) in 30% yield. [Rh I(tmp)]- is proposed to form initially via the deprotonation of Rh(tmp)H with KOH and then reacts with the unreacted Rh(tmp)H to give Rh II(tmp) via electron transfer. Thirdly, the hydroxide-induced disproportionation of RhII(tmp) to RhIII(tmp)OH and [Rh I(tmp)]- has also been proposed.* / The objective of this thesis focuses on studies of selective, base-promoted aliphatic carbon(alpha)-carbon(beta) bond activation (CCA) of ethers with rhodium(II) and rhodium(III) meso-tetramesitylporphyrin complexes (Rh II(tmp) and Rh(tmp)I). The roles of potassium hydroxide in promoting the interconversions of rhodium porphyrin species (RhII(tmp), Rh(tmp)I, Rh(tmp)OH and Rh(tmp)H) will also be discussed. / Lai, Tsz Ho. / Adviser: Kin Shing Chan. / Source: Dissertation Abstracts International, Volume: 72-04, Section: B, page: . / Thesis (Ph.D.)--Chinese University of Hong Kong, 2010. / Includes bibliographical references (leaves 161-172). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Electronic reproduction. Ann Arbor, MI : ProQuest Information and Learning Company, [200-] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Abstract also in Chinese.