The potential use of Resadiye/Tokat bentonite as a reinforcement in polypropylene (PP) and linear low density polyethylene (LLDPE) polymer matrix nanocomposites filler was investigated. At first, organoclays (OC) were prepared by cation exchange reaction (CER) between the raw bentonite (RB) and three quaternary ammonium salts with long alkyl tails (QA): hexadecyl trimethyl ammonium bromide [HMA] [Br], tetrabutyl ammonium tetrafluoroborate [TBA] [BF4], tetrakisdecyl ammonium bromide [TKA] [Br] and one quaternary phosphonium (QP) salt: tetrabutyl phosphonium tetrafluroborate [TBP] [BF4]. Characterization of resulting materials by XRD, TGA, FTIR and chemical analysis confirmed the formation of organoclays. Ternary composites of PP/organoclay/ maleic anhydride grafted polypropylene (MAPP) were prepared with two different grades of PPs in a co-rotating twin screw extruder. Composites prepared with these organoclays and PPs showed microcomposite formation. In the second part of the study, raw bentonite was purified by sedimentation, and characterization of purified bentonite (PB) by XRD, cation exchange capacity (CEC) measurement and chemical analysis (ICP) confirmed the success of purification method. PB was then modified with two QA`s: dimethyl dioctadecylammonium chloride [DMDA] [Cl], tetrakis decylammonium bromide [STKA] [Br] and one QP: tributyl hexadecyl phosphonium bromide [TBHP] [Br]. Organoclays from PB were used with the PP with lower viscosity, and ternary nanocomposites (PP/Organoclay2/MAPP5) were prepared in the extruder followed by batch mixing in an intensive batch mixer. Use of DMDA and TBHP OCs resulted in nanocomposite formation, while STKA resulted in microcomposite formation as observed by XRD and TEM. Young`s modulus and yield stress of the samples were enhanced through nanocomposite formation. In the last part of the study, ternary composites of LLDPE/Organoclay/ compatibilizer, a random terpolymer of ethylene, butyl acrylate and maleic anhydride (E-BA-MAH, Lotader&reg / 3210), were prepared by melt compounding in the batch mixer at two different clay concentrations (2 and 5 wt %) and fixed compatibilizer/organoclay ratio (&alpha / =2.5). A commercial organoclay, I34, was also used in LLDPE based nanocomposites to make a comparison. XRD and TEM analyses of the compounds prepared by DMDA and TBHP showed mixed nanocomposite morphologies consisting of partially intercalated and exfoliated layers. Young`s modulus and tensile strength of nanocomposites prepared with DMDA and TBHP showed generally higher values compared to those of neat LLDPE, while results were the highest in the composites prepared with commercial organoclay I34. Parallel disk rheometry was used as a supplementary technique to XRD, TEM and mechanical characterizations, and it was shown to be a sensitive tool in assessing the degree of dispersion of clay layers in the polymer matrix.

Dissertation (Ph.D.)--University of South Florida, 2008. / Title from PDF of title page. Document formatted into pages; contains 187 pages. Includes vita. Includes bibliographical references.

Certaines Bacteria synthétisent des phospholipides particuliers dont la structure possède des caractéristiques communes aux lipides des Bacteria et des Archaea : les éthers de glycérol bactériens (AGE). Le caractère singulier de ces lipides et leur structure chimique thermostable leur permettent d'être assez bien préservés dans l'environnement à la mort des cellules, et suggèrent leur potentiel à constituer de bons marqueurs biogéochimiques et/ou environnementaux. Cependant, très peu d'informations sont actuellement disponibles concernant les modes de formation et le rôle des AGE dans les membranes bactériennes. Au cours de cette thèse, nous avons étudié la composition lipidique de différentes souches pures de bactéries anaérobies sulfato-réductrices capables de synthétiser des AGE et cultivées dans différentes conditions contrôlées de température, pH et salinité. Diverses modifications structurales des AGE ont notamment été mises en évidence en réponse à des variations des conditions de croissance, dont certaines spécifiques d'une adaptation, et linéairement corrélées, à la température ou à la salinité. Les différents résultats démontrent l'implication des AGE dans l'adaptation membranaire en réponse à des variations physico-chimiques du milieu, et permettent d'envisager l'utilisation de la distribution structurale des AGE dans des échantillons naturels comme indicateur de conditions environnementales. L'analyse de la composition en AGE d'échantillons issus de différents écosystèmes actuels et anciens, caractérisés par des conditions environnementales contrastées a permis de vérifier le potentiel de certains AGE à être utilisés comme indicateurs de variations de conditions (paléo)environnementales / Some Bacteria synthesize particular phospholipids, called glycerol ether lipids (AGE) which have a chemical structure at the intersection of the Bacteria and Archea domains. The singular nature of these lipids and their thermostable chemical structure allow them to be well preserved in the environment following bacterial lysis, and suggest their potential to constitute good biogeochemical and/or environmental biomarkers. However, very little information is currently available concerning the modes of formation and the role of AGEs in bacterial membranes. In this thesis, we studied the lipid composition of various pure strains of anaerobic sulfate-reducing bacteria able to synthesize AGEs, grown under various controlled conditions of temperature, pH and salinity. Various structural modifications of AGE were observed in response to variations in growth conditions, some of which being specific to, and linearly correlated with, changes in temperature or salinity. The results demonstrate the involvement of AGEs in membrane adaptation to changes in the physico-chemical conditions, and suggest the use of the structural distribution of AGEs in natural samples as an indicator of environmental conditions. The analysis of the AGE content of samples from different actual and past ecosystems, allowed confirming the potential of AGEs to be used as indicators of variations of (paleo)environmental conditions

Orientador: Luzia Koike / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Quimica / Made available in DSpace on 2018-08-11T12:01:09Z (GMT). No. of bitstreams: 1 Silva_AlexsandroAraujoda_D.pdf: 4763363 bytes, checksum: 94ec1b6053e2229aa4f384bbb4fc49d7 (MD5) Previous issue date: 2008 / Resumo: Neste trabalho, serão apresentados os resultados geoquímicos orgânicos de um estudo com amostras de óleos, sendo duas lacustres de água doce (LAD) e duas mistas (M), ambas de campos próximo da costa terrestre, e dois óleos marinho-evaporiticos (ME) de campos localizados à aproximadamente 55 km da costa litorânea, todos ao longo do trend estrutural do Estreito-Guamaré, Bacia Potiguar, RN (Mello et al.79; Santos Neto et al.75) de duas formações: Pendência e Alagamar. Os principais objetivos deste estudo são: caracterizar as amostras de acordo com os componentes biomarcadores neutros e ácidos presentes; e sintetizar componentes padrões derivados do ergosterol e estigmasterol. O protocolo analítico utilizado foi publicado anteriormente por Lopes et al.185 and Koike et al.188. Como resultado, o presente trabalho relata a identificação de onze alquilesteranos [quatro com configuração 5b(H)] e dezesseis carboxialquilesteranos [oito com configuração 5b(H)], distribuídos nas amostras coletadas ao longo do Estreito-Guamare e que evidenciam que estes compostos não são somente de origem salina como salientado na literatura (Peters et al.1) mas também estão presentes em ambientes Lacustres de Água Doce, sendo estes resultados importante na área paleoambiental. Nove alquilesteranos e dez carboxialquilesteranos também foram detectados, além da identificação de 2-metil- e 4-metil-estigmastanos nas amostras ME. Os resultados mostram uma elevada concentração destes compostos nos óleos ME e a presença embora em baixa concentração em óleos LAD, sendo que pela primeira vez foram identificados neste tipo de óleo e em óleos brasileiros. Foram sintetizados três biomarcadores para análise de identificação e que podem também serem utilizados na fortificação de amostras e quantificação de esteranos e alquilesteranos / Abstract: In this work, will be presented the results of the organic geochemistry study oils of the samples with oils, and two lacustrine freshwater (LAD) and two mixed (M), both of fields near the terrestian cost, and two marine evaporitic oils (ME) of fields located approximately 55 km from the litoral coast. All samples collected from over Estreito-Guamare, Potiguar Basin, RN (Mello et al.79; Santos Neto et al.75) this field have two formation Pendencia and Alagamar. The main subject of the this work is the biomakers organic geochemistry characterization from hydrocarbons and acids components in the samples using the analytical protocol from our group (Koike et al.188 and Lopes et al.185) and to synthetise standards biomaker from commercial stigmasterol and ergosterol. As the results in this thesis show the identifications of the eleven alkylsteranes [four with 5b(H)] configuration] and sixteen carboxyalkylsteranes [eigh with 5b(H)] configuration], distribuited in the all samples collected over Estreito-Guamare, Potiguar basin. These results revealed the important scientific information, also in the Lacustrine Fresh Water oils detected the alkylsteranes biomarkers components. In the literature (Peters et al.1) until this moment it has been published that these biomarkers indicate saline enviromental and this result is one important paleoambiental information. Nine alkylsteranes and ten carboxyalkylsteranes were also detected, in addition to the identification of 2-methyl- and 4-methyl-stigmastanes in ME samples. The results show a high concentration of these compounds in the ME oils and presence but in low concentration in LAD oils, which were identified for the first time in this type of oil and oil Brazilians. Were synthesized three biomarkers for analysis of identification and can also be used in the fortification of samples and quantification of steranes and alkyl-steranes / Doutorado / Quimica Organica / Doutor em Ciências

La Province Volcanique du Rungwe (PVR) en Afrique de l’Est abrite diverses archives continentales (séquence de loess-paléosols, tourbières, lacs) permettant d’étudier les changements environnementaux passés des zones tropicales continentales. Ce travail s’est intéressé à l’applicabilité des alkyl tetraéthers de glycérol (tetraéthers) et des n-alcanes comme biomarqueurs de ces changements passés. Leur analyse le long de transects altitudinaux a permis de rendre compte de la capacité des tetraéthers à enregistrer de faibles changements de température de l’air dans la région. En conséquence, une calibration régionale a été établie afin d’améliorer les reconstructions de température de l’air en Afrique de l’Est. Au contraire, il est apparu que la composition isotopique de l’hydrogène des n-alcanes (δ²Hwax) était impactée par des paramètres physiques et biologiques supplémentaires ce qui complique son utilisation pour suivre les changements de température à l’échelle régionale. L’étude des variations de ces deux biomarqueurs le long d’une carotte de tourbe et d’une carotte de sédiment lacustre prélevées dans la PVR a révélé l’existence synchrone d’une période climatique plus chaude au cours de l’Holocène tardif. Par ailleurs, il a été observé dans la carotte de tourbe une transition d’un lac à une tourbière il y a ca. 2000 ans BP. Le présent travail démontre donc que les tetraéthers et les n-alcanes sont des biomarqueurs prometteurs, notamment parce qu’ils sont sensibles à de faibles variation climatiques ; cependant, afin de les interpréter correctement, il est nécessaire d’adopter une approche multi-marqueurs. / The Rungwe Volcanic Province (RVP) in East Africa offers a wide diversity of continental archives (loess-paleosols sequences, peatlands, lakes), allowing the investigation of past environmental changes in tropical continents. This work focused on the validation of glycerol dialkyl glycerol tetraether- (GDGT) and n-alkane-derived proxies. Analyses of these two biomarkers along altitudinal transects allowed assessing their ability to record temperature changes in the region. GDGTs were found to be robust temperature proxies in East Africa, and a regional calibration was established to improve temperature reconstructions from soil archives. In contrast, investigation of n-alkane hydrogen isotopic composition (δ²Hwax) in surface soils revealed that its variations seemed to be impacted by additional biological and physical parameters than temperature, preventing its generalization at a regional scale. Application of GDGT and n-alkane proxies to continental archives revealed past environmental changes over the Late Holocene in the RVP. A late Holocene synchronous temperature maximum was especially observed in a peat core and sediment core from two sites of the RVP. A multi-proxy approach was applied to the peat core, revealing that an ecosystem change from a lake to a peatland occurred ca. 2000 yrs BP ago. The present work showed that GDGTs and n-alkanes are promising biomarkers because of their sensitivity to slight climate variations, but that they need to be combined with other proxies to accurately reconstruct environmental changes.

No description available.

Les substrats structurés aux échelles micrométriques et nanométriques sont intéressants pour des applications biomédicales, par exemple dans des puces à ADN/protéines, pour la miniaturisation des « lab-on-chip » ou pour préparer des implants permettant le contrôle de l'adhésion de cellules. Dans la dernière décennie des études ont montrées, que les cellules vivantes peuvent détecter la présence de nano-structures sur les substrats sur lesquels elles adhèrent. Bien que ces mécanismes soient étudiés depuis une dizaine d'années, les mécanismes fondamentaux sont encore en cours d'études. Tant pour une étude au niveau fondamental que dans le but d'applications concrètes, il est important de développer des techniques simples pour structurer des substrats sur de grandes surfaces. Nous avons réalisé une nouvelle méthode alliant un faible coût de fabrication et la biocompatibilité pour structurer et biofonctionnaliser des substrats à l'échelle nanométrique en utilisant des membranes d'alumine poreuses comme masque. Les membranes d'alumine poreuses, préparées par électrochimie, sont naturellement organisées en un réseau hexagonal sur une surface de quelques cm². Nous les utilisons comme masque pour la structuration de surfaces. Des trous réguliers sont gravés dans le substrat à travers les membranes d'alumine poreuses. Ce substrat est ensuite utilisée lors d'une application biologique : une bicouche lipidique est déposée sur le substrat structuré pour imiter les hétérogénéités de la membrane cellulaire. La mobilité de la bicouche est étudiée par corrélation de spectroscopie de fluorescence à rayon variable. Une autre série d'expériences est faite en utilisant des membranes d'alumine poreuses comme masque d'évaporation pour créer des réseaux organisés d'îlots d'organo-silanes. Deux molécules sont utilisées elles possèdent soit une fonction amine réactive soit une longue chaîne carbonée inerte. La bio-fonctionnalisation est ensuite effectuée en utilisant la fonction amine pour accrocher un anticorps. Des études sont effectuées en parallèle, sur des substrats bio-fonctionnalisés à l'échelle micrométrique grâce au micro-contact printing. Le but de cette étude est de mettre au point une biochimie de surface permettant le contrôle de l'adhésion de cellules immunitaires, avec le but de transférer ensuite la biochimie à l'échelle nanométrique. / Substrates patterned at the micro-scale and nano-scale are interesting for biomedical applications, for example, in DNA/protein nano-arrays, for miniaturized lab-on-chip applications or for making smart implants that can control adhesion of cells. In the last decade, some studies showed that living cells can detect nano-scale structures on substrates to which they adhere. Although this behaviour has been observed now for over a decade, the fundamental detection mechanism is still under investigation. Both for fundamental studies and for applications, it is important to develop facile techniques to pattern substrates on a large scale. We have realized a novel technique for patterning and bio-functionalizing substrates at the nano-scale using porous anodic alumina membranes as masks. The ordered porous anodic alumina membranes, prepared by classical electro-chemistry, are naturally organized in an hexagonal array over surface area of few square centimeters. Here we use them as mask for surface patterning. To create an array of nano holes, the substrate is dry etched through the alumina pores. In a biologically relevant application, a lipid bilayer is deposited on the patterned substrate to mimic a heterogeneous cell membrane. The mobility of the bilayer is studied by fluorescent correlation spectroscopy. In a different set of experiments, the porous alumina membranes are used as evaporation mask to create an organized array of alkyl-silane islands - either with a short carbon chain and with a reactive amine group or with a long carbon chain and non-reactive. Afterwards, biochemical functionalization is achieved by exploiting the amino-function of the amino-silane to bind an antibody. In parallel, we have started some studies of adhesion on a pattern substrate at micro-scale with immunological cells. The substrate is pattern by micro contact printing and the cell adhesion is observed by RICM. The aim of this studies is to prepare the biochemistry for the immunological cells adhesion, with the aim or transferring this to the nano-scale.

A bactéria fitopatogênica Xylella fastidiosa é o agente etiológico da Clorose Variegada dos Citros (CVC), que causa perdas anuais estimadas em US$ 100 milhões no Brasil. Durante o processo infeccioso, a geração extracelular de espécies ativas de oxigênio é um dos principais mecanismos de defesa da planta contra o patógeno. Em contrapartida, para se defender do estresse oxidativo imposto pelo hospedeiro, os fitopatógenos possuem mecanismos de defesa que incluem enzimas antioxidantes, como as peroxirredoxinas, alquil hidroperóxido redutase subunidade C (AhpC) e proteína comigratória com bacterioferritina (Bcp). As peroxirredoxinas são proteínas que utilizam suas cisteínas ativas para catalisar a redução de hidroperóxidos. Por análise proteômica, os produtos dos genes ahpc e bcp foram identificados no extrato celular protéico de X. fastidiosa (Smolka e col., 2003). Com o intuito de caracterizar funcional e estruturalmente as proteínas AhpC e Bcp de X. fastidiosa, clonamos e expressamos seus respectivos genes em Escherichia coli e purificamos as proteínas por cromatografia de afinidade a níquel. As proteínas recombinantes apresentaram atividade dependente de tiól de redução de peróxido de hidrogênio e hidroperóxidos orgânicos. A atividade peroxidase da AhpC e Bcp são dependentes, respectivamente, de alquil hidroperóxido redutase subunidade F (AhpF) e do sistema tiorredoxina. Paradoxalmente, a flavoproteína AhpF possui atividade NAD(P)H oxidase, que resulta na produção de peróxido de hidrogênio. As constantes de segunda ordem da reação das proteínas com peróxido de hidrogênio (da ordem de 107 M-1.s-1), determinadas pelo ensaio de cinética competitiva com peroxidase de raiz forte, indicam que ambas possuem atividades peroxidase equivalentes às apresentadas por glutationa peroxidases dependentes de selênio e catalases, ao contrário do descrito na literatura. Por SDS-PAGE não-redutor e pela quantificação de cisteínas livres por DTNB, verificamos que as proteínas possuem mecanismos catalíticos distintos: AhpC é uma 2-Cys Prx típica (com formação de ponte dissulfeto intermolecular), enquanto Bcp é uma 2-Cys Prx atípica (com formação de ponte dissulfeto intramolecular). Para AhpC, a atividade catalítica envolve as cisteínas conservadas (Cys-47 e Cys-165), em contraste, apenas através de estudos de mutação sítio-dirigida e espectrometria de massas conseguimos identificar os resíduos de cisteínas envolvidos na atividade catalítica da Bcp (Cys-47 e Cys-83). A caracterização estrutural de AhpC por cromatografia de exclusão molecular e espalhamento dinâmico de luz mostram que a proteína nativa é um decâmero estável, independentemente do estado de oxidação de suas cisteínas. A caracterização da estrutura cristalográfica de Bcp C47S, inédita para 2-Cys Prx atípicas que possuem as cisteínas ativas separadas por 35 aminoácidos, indica que a proteína possui o enovelamento característico das peroxirredoxinas e que as cisteínas ativas estão localizadas a uma distância média de 12,4 Å. Baseado em dicroísmo circular, apresentamos dados que indicam que a aproximação das cisteínas deve envolver um significativo rearranjo estrutural, que provavelmente se inicia com a formação do intermediário ácido sulfênico na cisteína peroxidásica (Cys-47). Assim, conseguimos elucidar o papel catalítico dessas proteínas, bem como identificar seus sistemas redutores, obtendo informações que podem ser relevantes para o entendimento do mecanismo da patogenicidade da X. fastidiosa. Os resultados apresentados neste trabalho podem contribuir para o desenvolvimento de novas técnicas de controle de praga para a doença CVC em citrus e outras que envolvam a bactéria X. fastidiosa. / The phytopathogenic bacterium Xylella fastidiosa is the etiological agent of Citrus Variegated Chlorosis (CVC) that causes losses of about 100 millions dollars per year in Brazil. During infection, reactive oxygen species play a central role in plant pathogen defense. To survive under oxidative stress imposed by the host, microorganisms express antioxidant proteins, including the peroxiredoxins alkyl hydroperoxide reductase subunit C (AhpC) and bacterioferritin comigratory protein (Bcp). Peroxiredoxins are peroxidases, which rely on an activated cysteine residue to catalyze the reduction of hydroperoxides. By proteome analysis, Smolka et al. (2003) identified the products of ahpc and bcp genes present in whole cell extract of X. fastidiosa. To characterize the function and structure of AhpC and Bcp protein, their genes were cloned in Escherichia coli and the corresponding proteins purified by nickel affinity chromatography. Recombinant proteins presented thiol-dependent peroxidase activity against hydrogen peroxide and organic hydroperoxides. AhpC and Bcp peroxidase activities are dependent on alkyl hydroperoxide reductase subunit F (AhpF), and on thioredoxin system, respectively. Paradoxically, AhpF flavoenzyme possesses hydrogen peroxide-forming oxidase activity. Contrary to classical assumptions, competitive kinetics employing horseradish peroxidase assays showed that the second-order rate constants of AhpC and Bcp reaction with hydrogen peroxide are in the order of 107 M-1.s-1, as fast as the activity of selenium-dependent glutathione peroxidases and catalases. Non-reducing SDS-PAGE and cysteine quantification using DTNB indicated different peroxidasic mechanisms: AhpC is a typical 2-Cys peroxiredoxin (with intermolecular disulfide bond formation), while Bcp is an atypical 2-Cys peroxiredoxin (with intramolecular disulfide bond formation). In contrast to the well-conserved AhpC cysteines responsible for the peroxidase activity (Cys-47 and Cys-165), only through site-specific mutagenesis and mass spectrometry we could identified the cysteine residues involved in the Bcp peroxidase activity (Cys-47 and Cys-83). Structural characterization by size exclusion chromatography and dynamic light scattering revealed that AhpC native protein forms stable and redox state independent decamers. The crystal structure of Bcp C47S, the first 2-Cys Prx with a 35-residue between the active cysteines ever characterized, shows that protein contains the common fold of peroxiredoxins and that active cysteines lies ~12.4 Å away one from the other. Based on circular dichroism, we presented data indicating that disulfide bond formation may require significant conformational changes, which probably is triggered by the peroxidatic cysteine oxidation to sulfenic acid. In conclusion, we elucidated the catalytic mechanisms and reduction systems of AhpC and Bcp proteins that may help to understand the pathogenicity mechanism of X. fastidiosa. These results can contribute to the development of plague control methods against X. fastidiosa.

Polycyclic aromatic hydrocarbons, derivates of polycyclic aromatic hydrocarbons, chromatography

Fotoredoxkatalys tillhandahåller möjligheter att utveckla nya hållbara kemiska reaktionsvägar. När fotokatalysatorn bestrålas med synligt ljus möjliggörs elektronöverföring till eller från substratet som i sin tur medför alstring av reaktiva fria radikaler. Kolradikaler, genererade med fotoredox-katalys från alkyloxalataktiverade alkoholer, har framgångsrikt kopplats till sulfinyliminer och möjliggör därigenom syntes av onaturliga α-aminosyror. Reaktionen utförs vid rumstemperatur och kräver endast extern energi i form av synligt ljus för att aktivera den iridium-baserade fotokatalysatorn. Den höga tillgängligheten av alkoholer utgör ett rimligt skäl för att använda dem som startmaterial. I detta projekt har tertiära alkoholer resulterat i framgångsrika reaktioner. / Photoredox catalysis provides opportunities to develop new sustainable chemical reaction pathways through single-electron transfer events and generation of reactive free-radical species. In this thesis carbon radicals, generated with photoredox catalysis from alkyl oxalate-activated alcohols, have successfully been coupled to sulfinyl imines and thereby enabling synthesis of unnatural α-amino acids. The reaction is performed at room temperature and only requires external energy in the form of visible light to activate the iridium-based photocatalyst. The abundance and availability of alcohols presents good reasons to use them as radical precursors. Under the developed reaction conditions, tertiary alcohols proved to be successful radical precursors, giving the desired product in good yield.