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Incidence and severity of southern blight caused by Sclerotium rolfsii Sacc. is increasing in the mid-Atlantic region of the U.S. affecting both conventional and organic vegetable production systems. Traditional southern blight management relied on fumigants and fungicides with often inconsistent and uneconomical results. Moreover, with the phase-out of methyl bromide, and the high cost and toxicity of other available fumigants, it is necessary to identify effective and economical southern blight management alternatives. Therefore, the objectives of this research were to 1) evaluate the effect of planting date and potato (Solanum tuberosum L.) cultivar selection on southern blight incidence and tuber yield and quality; 2) compare potato cultivar tuber susceptibility to S. rolfsii in post-harvest settings; and 3) assess the suitability of six cool-season cover crop biomasses and three locally organic materials as carbon sources for anaerobic soil disinfestation (ASD) treatments and their impact on S. rolfsii viability and soil. In a three-year field study, ten commercial potato cultivars and four planting dates per year were evaluated on the Eastern Shore of Virginia. Later potato plantings generally produced greater disease incidence (85-94%) and lower tuber yield (1.8-9.4 Mg ha-1) and quality (47-78%), likely driven by humid, warm weather later in the season that was conducive to disease and detrimental to the potato crop. While no potato cultivar was completely immune to S. rolfsii incidence, cultivar 'Accumulator' consistently had one of the lowest disease incidences (12-71%) and greatest tuber yield among cultivars (6.2-37.3 Mg ha-1), and 'Adirondack Blue' and 'Red Norland' had the overall greatest disease incidence (33-100%). Following harvest of the field experiment, the susceptibility of tubers from the ten cultivars to post-harvest rot caused by S. rolfsii was compared in a laboratory experiment under controlled conditions. 'Atlantic' followed by 'Accumulator' were the least susceptible (3.7-12.6 g of diseased tissue) whereas 'Adirondack Blue', followed by red-skinned potato cultivars had the greatest severity of post-harvest tuber rot (12-17.5 g of diseased tissue). Following three weeks of ASD treatments in growth chamber pot experiments utilizing nine carbon sources incubated at 15/25°C 12/12-h cycle, most carbon sources induced soil anaerobicity (33-90 % iron oxide paint removal), but they did not reduce sclerotial viability compared to nonamended aerobic controls. However, most amended soils undergoing ASD induced greater soil microbial activity (0.7-2.0 % CO2 in vol.) compared to nonamended controls (0.1-0.7 CO2 in vol.), increased soil pH, and some amendments increased soil nitrate accumulation. Overall, results of these studies indicate that southern blight can be effectively managed in potato by coupling early planting dates with cultivar selection, but though promising, additional studies are needed to determine the parameters to effectively decrease S. rolfsii viability with ASD treatments. / Doctor of Philosophy / The fungal disease southern blight, caused by the soilborne plant pathogen Sclerotium rolfsii Sacc., is increasing in the mid-Atlantic U.S. The increase of southern blight is likely due to a multitude of issues such as climate fluctuations, reduction in the use of fumigants, increased soil organic matter through conservation practices, and cropping systems that favor soilborne pathogens. Traditional management of S. rolfsii relied on pesticides and fumigants, but control was often inconsistent and expensive. Moreover, the use of some soil fumigants has been restricted due to environmental concerns, which has limited the options for the management of plant pathogens present in the soil, and management alternatives are needed. Through a series of field, laboratory, and greenhouse experiments, this study 1) evaluated the effect of planting date and potato (Solanum tuberosum L.) cultivar selection on southern blight incidence and tuber yield and quality; 2) compared potato cultivar tuber susceptibility to S. rolfsii in post-harvest settings; and 3) assessed the suitability of six cool-season cover crop biomasses and three locally-sourced organic materials as carbon sources in anaerobic soil disinfestation (ASD) treatments and their impact on S. rolfsii viability and soil. Results of a three-year field study demonstrated that an integrated approach to the management of southern blight that utilizes moderately resistant potato cultivars such as 'Accumulator' and early (March to early April) planting dates will minimize risk of disease and maximize tuber yield. Following harvest, inoculation of potato tubers under controlled conditions revealed that the cultivar 'Atlantic' followed by 'Accumulator' can avoid greater losses due to less tuber rot, while 'Adirondack Blue' followed by red-skinned potatoes have a greater risk of suffering post-harvest tuber decay from southern blight. The anaerobic soil disinfestation (ASD) treatments examined in this study indicated that cover crops biomass and poultry litter are suitable carbon sources to induce soil anaerobic conditions, but they may not reduce the survival of S. rolfsii propagules if treatment temperatures are below 25°C. However, ASD showed benefits such as increased activity of soil microbial communities compared to nonamended soil, increased soil acidity, and some amendments such as mushroom compost, poultry litter, and Austrian winter pea (Pisum sativum subsp. arvense) can contribute soil nutrients such as nitrate. Overall, this research demonstrates that choosing less susceptible cultivars coupled with early planting dates can minimize the negative impact of southern blight on potato yields and quality, and consequently minimize the use of pesticides as the main option to control southern blight on potato across the mid-Atlantic region. Though promising, additional studies are needed to determine the parameters that optimize ASD as an alternative to manage S. rolfsii with ASD treatments.

The production of strawberries can be severely limited by soilborne plant pathogens, insects and weeds. Macrophomina phaseolina is a problematic soilborne fungal pathogen in California strawberry production inciting the disease Macrophomina crown rot. When established, the pathogen can cause extensive plant decline and mortality. Host resistance will be a critical tool for managing this disease and guiding breeding programs in the post methyl bromide era. Evaluation of host resistance in strawberry germplasm to M. phaseolina was evaluated through phenotypic assessments of disease incidence. A total of 90 strawberry cultivars and elite selections were included in a replicated field trial conducted in artificially inoculated soils to assess host resistance. Significant differences in levels of resistance and susceptibility were observed among genotypes tested in this trial. The five most resistant strawberry genotypes from highest to lowest in percent plant mortality were: UC-R, UC-G, UC-V, Manresa, and Osceola. The five most susceptible strawberry genotypes with the highest percent mortality in ranking order from highest to lowest were: UC-J, Ruby June, Festival, UC-Y, and UC-A. Of the genotypes tested in this trial UC-V, Manresa and Osceola could be characterized as highly resistant, but no complete resistance was observed. An additional study was conducted to correlate host symptom expression with the extent of pathogen colonization in different strawberry tissues, and to determine if resistant germplasm can contribute to secondary inoculum production in the field. An established qPCR method was utilized to quantify M. phaseolina colonization of strawberry tissues. There were significant effects for cultivar (P < 0.0001) as well as a significant two-way interaction of cultivar x sample time (P= 0.0083) on the concentration of M. phaseolina DNA detected in strawberry tissues. Expression of the resistant phenotype in strawberry cultivars was associated with limited plant colonization by M. phaseolina. The extent of colonization of a specific cultivar by M. phaseolina was dependent on the sample time after inoculation with the pathogen. In addition, the roots and crowns of a specific strawberry cultivar were equally colonized on a per plant tissue weight basis, but this provides only speculation into the mechanisms conferring host resistance. A third study was conducted to integrate host resistance of strawberry genotypes with the use of organic amendments in effort to mutually enhance the efficacy of each factor for the control of Macrophomina crown rot. Artificially inoculated potting substrate was amended with Brassica juncea mustard seed meal at a rate of 4.94 tons ha-1(MSM), and anaerobic soil disinfestation utilizing rice bran at a rate of 22.24 tons ha-1 (ASD) were compared to a non-amended (UTC) and steam controls. The soil assay indicated that the ASD and steam treatments were able to reduce the CFU g-1 potting substrate of M. phaseolina by 99.7-100%. In addition, there were significant effects of soil treatment on the fresh biomass of weed seedlings recovered from the potting substrate. However, disease severity and host colonization of multiple strawberry cultivars by M. phaseolina was not reduced when grown in the treated potting substrate. The effect of strawberry cultivar on the extent of pathogen colonization was highly significant (P < 0.0001), in which cultivars characterized as resistant from phenotypic screenings possessed lower concentrations of M. phaseolina DNA. The suppression of M. phaseolina in response to organic amendments was limited but this study supports findings from previous experiments that genotype specific host resistance minimizes host colonization and reduces the production of secondary inoculum.

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