Intraspecific variation within the genetic model plant Arabidopsis thaliana has been used to research numerous potentially adaptive and economically important traits. In this thesis I used this tool to investigate root morphology and adaptation of plants to edaphic conditions. Firstly I tested local adaptation of chosen A. thaliana wild genotypes collected from north eastern Scotland, to two soil types with contrasting textures. When local adaptation is defined as fitness advantage (reproductive output) in local soil, I did not find clear signs of local adaptation. Additionally, I observed significant phenotypic variation between collected accessions for both mineral nutrient uptake and growth in the two soil types. Together these results may suggest the mixing of adapted genotypes due to extensive human disturbance in north eastern Scotland. Secondly I focused on two linked aspects of root biology: endodermal development and root system architecture. The characteristic features of the endodermis include Casparian strips (CS) that form a barrier to apoplastic transport. Some mutants with an altered CS are sensitive to growth on media with elevated magnesium (Mg) and reduced calcium (Ca). In order to potentially identify novel alleles of genes involved in CS biosynthesis I took advantage of this growth phenotype and performed genome wide association (GWA) analysis on response of plants to low Ca/Mg ratio of the growth medium. As a result I compiled a list of genes for the future research by choosing candidate genes identified in the GWA study for both plant weight and elemental composition. This list was further refined using knowledge on gene expression in the endodermis. Accessions with the most extreme response to this low Ca/Mg treatment were analysed further. I identify a link between both lateral root number and total root length with performance on growth medium containing a low Ca/Mg ratio.

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The model plant Arabidopsis thaliana has been very successful thus far as a tool for understanding and studying the genetics of plant development. Analysis of its sequenced genome revealed the occurrence of duplicated chromosome blocks, resulting in duplicated genes. Duplicated genes, high in sequence and/or structure similarity, form gene families. One such family, of BRX-like genes, is presented in this thesis. All members contain a characteristic "BRX" domain that is required for BRX activity in planta. BRX (BREVIS RADIX), is a novel regulator of root growth in Arabidopsis. However, analyses of Arabidopsis single and double mutants with other gene family members, suggests that BRX is the only member with a dominating role in root development. Interestingly, BRXL1, although having BRX activity in the root, does not act redundantly with BRX in vivo, presumably because it is expressed at much lower levels than BRX. These two gene family members demonstrate the uncommon phenomenon of unequal genetic redundancy in plants. Another gene family member, BRXL4, although non-redundant with regards to BRX activity in the root, did display novel shoot-related phenotypes when over-expressed. In these lines the lateral shoots and hypocotyls showed increased Gravitropic Set-Point Angles resulting in the downward growth of the adult lateral shoots and a wide range of growth directions in the hypocotyls. Over-expression lines of BRXL4 also displayed seedling agravitropism. Auxin-induced transcription as monitored by the DR5::GUS reporter, is altered in these lines compared to wild-type. Additionally, hypocotyl curvature, stem bending and amyloplast localization profiles in response to a change in gravity vector, are also altered in these over-expression lines and in the brxl4 mutant compared to wild-type.

Roots are essential for plant anchorage and nutrient uptake. Although root system architecture is genetically determined, its high level of plasticity allows rapid as well as long term adaptation to the plants' environment. To confer such adaptability, favorable alleles have been selected within species to endow them with an optimized root system. The identification of such favorable alleles is therefore a central component of research in plant breeding. / In an attempt to isolate novel factors that modulate root development, we exploited natural genetic variation in the model plant Arabidopsis thaliana. Tissue culture analysis of 44 accessions led to the identification of a line, Uk-1 (Umkirch-1), whose root system differs significantly from average accessions. A short primary root and an increased number of lateral and adventitious roots are typical for the Uk-1 root system, while the average Arabidopsis root system consists of a predominant primary root and few lateral roots. The major locus responsible for the Uk-1 phenotype, BREVIS RADIX (BRX), was successfully isolated by map-based cloning. Quantitative trait locus (QTL) analysis revealed that BRX is responsible for ca. 80% of the variance of the observed primary root length difference as compared to an average control accession. / BRX controls the extent of cell proliferation and elongation in the growth zone of the root tip and is a member of a novel, small family of proteins that contain three distinct and highly conserved domains of unknown function. BRX is a low abundant, nuclear protein, which is expressed in the phloem and the pericycle at the phloem poles. BRX is also expressed in the columella. Since BRX is not expressed in the root meristem, it must affect root growth in a secondary manner, likely by modulating responses to the plant hormone auxin. / Transcriptional profiling in root tissues revealed that BRX does so by maintaining optimal expression of the brassinosteroid biosynthesis gene CPD, and thereby optimal endogenous levels of the plant hormone brassinosteroid. Further analysis identified BRX as a central component of the interdependency of brassinosteroid signaling and auxin signaling.

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