This report discusses simulators in automata theory and which one should be best for use in laboratory assignments. Currently, the Formal Languages, Automata and Theory of Computation course (FABER) at Mälardalen University uses the JFLAP simulator for extra exercises. To see if any other simulators would be useful either along with JFLAP or standalone, tests were made with nine programs that are able to graphically simulate automata and formal languages. This thesis work started by making an overview of simulators currently available.After the reviews it has become clear to the author that JFLAP is the best choice for majority of cases. JFLAP is also the most popular simulator in automata theory courses worldwide.To support the use of JFLAP for the course a manual and course assignments are created to help the student to getting started with JFLAP. The assignments are expected to replace the current material in the FABER course and to help the uninitiated user to get more out of JFLAP.

This thesis presents a model of Quantum Cellular Automata (QCA). The presented formalism is a natural quantization of the classical Cellular Automata (CA). It is based on a lattice of qudits, and an update rule consisting of local unitary operators that commute with their own lattice translations. One purpose of this model is to act as a theoretical model of quantum computation, similar to the quantum circuit model. The main advantage that QCA have over quantum circuits is that QCA make considerably fewer demands on the underlying hardware. In particular, as opposed to direct implementations of quantum circuits, the global evolution of the lattice in the QCA model does not assume independent control over individual \emph{qudits}. Rather, all qudits are to be addressed collectively in parallel. The QCA model is also shown to be an appropriate abstraction for space-homogeneous quantum phenomena, such as quantum lattice gases, spin chains and others. Some results that show the benefits of basing the model on local unitary operators are shown: computational universality, strong connections to the circuit model, simple implementation on quantum hardware, and a series of applications. A detailed discussion will be given on one particular application of QCA that lies outside either computation or simulation: single-spin measurement. This algorithm uses the techniques developed in this thesis to achieve a result normally considered hard in physics. It serves well as an example of why QCA are interesting in their own right.

We outline a novel technique that maps the satisfiability problems of second-order logics, in particular WSnS (weak monadic second-order logic with n successors), S1S (monadic second-order logic with one successor), and of μ-calculus, to the problem of query evaluation of Complex-value Datalog queries. In this dissertation, we propose techniques that use database evaluation and optimization techniques for automata-based decision procedures for the above logics. We show how the use of advanced implementation techniques for Deductive databases and for Logic Programs, in particular the use of tabling, yields a considerable improvement in performance over more traditional approaches. We also explore various optimizations of the proposed technique, in particular we consider variants of tabling and goal reordering. We then show that the decision problem for S1S can be mapped to the problem of query evaluation of Complex-value Datalog queries. We explore optimizations that can be applied to various types of formulas. Last, we propose analogous techniques that allow us to approach μ-calculus satisfiability problem in an incremental fashion and without the need for re-computation. In addition, we outline a top-down evaluation technique to drive our incremental procedure and propose heuristics that guide the problem partitioning to reduce the size of the problems that need to be solved.

We compare two methods for software specification: <em>algebraic specifications</em> and automata. While algebraic specifications have been around since the 1970s and have been studied extensively, specification by automata is relatively new. Its origins are in another veteran method called <em>trace assertions</em>, which considers a software module as a set of traces, that is, a sequences of function executions. A module is specified by a set of canonical traces and an equivalence relation matching one of the canonical traces to each non-canonical trace. It has been recently shown that trace assertions is an equivalent method to specification by automata. In continuation of this work on trace assertions and automata, we study how automata compare with algebraic specifications. We prove that every specification using an automaton can be converted into an algebraic specification describing the same abstract data type. This conversion utilises a set of canonical words, representing states in the automaton. We next consider varieties of monoids as a heuristic for obtaining more concise algebraic specifications from automata. Finally, we discuss the opposite conversion of algebraic specifications into automata. We show that, while an automaton always exists for every abstract data type described by an algebraic specification, this automaton may not be finitely describable and therefore may not be considered as a viable method for software specification.

This thesis presents a model of Quantum Cellular Automata (QCA). The presented formalism is a natural quantization of the classical Cellular Automata (CA). It is based on a lattice of qudits, and an update rule consisting of local unitary operators that commute with their own lattice translations. One purpose of this model is to act as a theoretical model of quantum computation, similar to the quantum circuit model. The main advantage that QCA have over quantum circuits is that QCA make considerably fewer demands on the underlying hardware. In particular, as opposed to direct implementations of quantum circuits, the global evolution of the lattice in the QCA model does not assume independent control over individual \emph{qudits}. Rather, all qudits are to be addressed collectively in parallel. The QCA model is also shown to be an appropriate abstraction for space-homogeneous quantum phenomena, such as quantum lattice gases, spin chains and others. Some results that show the benefits of basing the model on local unitary operators are shown: computational universality, strong connections to the circuit model, simple implementation on quantum hardware, and a series of applications. A detailed discussion will be given on one particular application of QCA that lies outside either computation or simulation: single-spin measurement. This algorithm uses the techniques developed in this thesis to achieve a result normally considered hard in physics. It serves well as an example of why QCA are interesting in their own right.

We outline a novel technique that maps the satisfiability problems of second-order logics, in particular WSnS (weak monadic second-order logic with n successors), S1S (monadic second-order logic with one successor), and of μ-calculus, to the problem of query evaluation of Complex-value Datalog queries. In this dissertation, we propose techniques that use database evaluation and optimization techniques for automata-based decision procedures for the above logics. We show how the use of advanced implementation techniques for Deductive databases and for Logic Programs, in particular the use of tabling, yields a considerable improvement in performance over more traditional approaches. We also explore various optimizations of the proposed technique, in particular we consider variants of tabling and goal reordering. We then show that the decision problem for S1S can be mapped to the problem of query evaluation of Complex-value Datalog queries. We explore optimizations that can be applied to various types of formulas. Last, we propose analogous techniques that allow us to approach μ-calculus satisfiability problem in an incremental fashion and without the need for re-computation. In addition, we outline a top-down evaluation technique to drive our incremental procedure and propose heuristics that guide the problem partitioning to reduce the size of the problems that need to be solved.

There has been a move recently in academia, industry, and the consumer space towards the use of unsupervised parallel computation and distributed networks (i.e., networks of computing elements working together to achieve a global outcome with only local knowledge). To fully understand the types of problems that these systems are applied to regularly, a representative member of this group of unsupervised parallel and distributed systems is needed to allow the development of generalizable results. Although not the only potential candidate, the field of cellular automata is an excellent choice for analyzing how these systems work as it is one of the simplest members of this group in terms of design specification. The current ability of the field of cellular automata to represent the realm of unsupervised parallel and distributed systems is limited to only a subset of the possible systems, which leads to the main goal of this work of finding a method of allowing cellular automata to represent a much larger range of systems. To achieve this goal, a conceptual framework has been developed that allows the definition of interconnected systems of cellular automata that can represent most, if not all, unsupervised parallel and distributed systems. The framework introduces the concept of allowing the boundary conditions of a cellular automaton to be defined by a separately specified system, which can be any system that is capable of producing the information needed, including another cellular automaton. Using this interconnection concept, two forms of computational simplification are enabled: the deconstruction of a large system into smaller, modular pieces; and the construction of a large system built from a heterogeneous set of smaller pieces. This framework is formally defined using an interconnection graph, where edges signify the flow of information from one node to the next and the nodes are the various systems involved. A library has been designed which implements the interconnection graphs defined by the framework for a subset of the possible nodes, primarily to allow an exploration of the field of cellular automata as a potential representational member of unsupervised parallel and distributed systems. This library has been developed with a number of criteria in mind that will allow it to be instantiated on both hardware and software using an open and extendable architecture to enable interaction with external systems and future expansion to take into account novel research. This extendability is discussed in terms of combining the library with genetic algorithms to find an interconnected system that will satisfy a specific computational goal. There are also a number of novel components of the library that further enhance the capabilities of potential research, including methods for automatically building interconnection graphs from sets of cellular automata and the ability to skip over static regions of a given cellular automaton in an intelligent way to reduce computation time. With a particular set of cellular automaton parameters, the use of this feature reduced the computation time by 75%. As a demonstration of the usefulness of both the library and the framework that it implements, a hardware application has been developed which makes use of many of the novel aspects that have been introduced to produce an interactive art installation named 'Aurora'. This application has a number of design requirements that are directly achieved through the use of library components and framework definitions. These design requirements included a lack of centralized control or data storage, a need for visibly dynamic behaviour in the installation, and the desire for the visitors to the installation to be able to affect the visible movement of patterns across the surface of the piece. The success of the library in this application was heavily dependent on its instantiation on a mixture of hardware and software, as well as the ability to extend the library to suit particular needs and aspects of the specific application requirements. The main goal of this thesis research, finding a method that allows cellular automata to represent a much larger range of unsupervised parallel and distributed systems, has been partially achieved in the creation of a novel framework which defines the concept of interconnection, and the design of an interconnection graph using this concept. This allows the field of cellular automata, in combination with the framework, to be an excellent representational member of an extended set of unsupervised parallel and distributed systems when compared to the field alone. A library has been developed that satisfies a broad set of design criteria that allow it to be used in any future research built on the use of cellular automata as this representational member. A hardware application was successfully created that makes use of a number of novel aspects of both the framework and the library to demonstrate their applicability in a real world situation.

Thesis (M. Phil.)--University of Hong Kong, 2002. / Includes bibliographical references (leaves 65-66).

Our research is the first in-depth study in the use of the Micron Automata Processor, a novel re-configurable streaming co-processor which is purpose-built to execute thousands of Non-deterministic Finite Automata (NFA) in parallel. By design, this processor is well-suited to accelerate applications which need to find all occurrences of thousands of complex string-patterns in the input data. We have validated this by implementing two such applications, one from network security and the other from bioinformatics, both of which are significantly faster than their state-of-art counterparts. Our research has also widened the scope of the applications which can be accelerated through this processor by finding ways to quickly program any generic graph into it and then search for hard to find features like maximal-cliques and Hamiltonian paths. These applications and algorithms have yielded valuable design-inputs for next generation of the chip which is currently in design phase. We hope that this work paves the way to the early adoption of this upcoming architecture and to efficient solution of some of the currently computationally challenging problems.

published_or_final_version / Physics / Master / Master of Philosophy