Thesis (Ph. D.)--University of Washington, 2004. / Vita. Includes bibliographical references (leaves 196-205).

The hydrothermal vent environment, in its extreme spatial and temporal variability, offers the opportunity to study habitats that are naturally fragmented and unstable. The vestimentiferan tubeworm Ridgeia piscesae is a foundation species inhabiting hydrothermal vent habitat in the Northeast Pacific Ocean. R. piscesae is a phenotypically plastic species and is arranged in a metapopulation spatial structure, with each local population displaying one of a range of morphotypes. Ridgeia piscesae participates in an obligate symbiosis that is dependent on hydrogen sulphide in the hydrothermal vent fluid that supplies each local population. Hydrothermal fluid flow is highly variable in the hydrothermal vent environment and hydrogen sulphide flux is a limiting nutrient for R. piscesae; this variability may create differences in habitat quality. The objective of this study is to determine whether local populations of R. piscesae centered on high and low flux hydrothermal fluid outputs are similar in body condition, reproductive condition, and juvenile recruitment. Using the submersibles ROPOS and Alvin, I collected high flux and low flux sample pairs from within meters of each other at multiple sample sites on Axial Seamount and the Endeavour segment of the Juan de Fuca Ridge. I used morphological measurements, histology and lipid analysis to assess physiological and reproductive condition. I also determined the relative abundances of new and older recruits in high and low flux local populations. I found that low flux habitat was inferior in its ability to support Ridgeia piscesae at all stages in the tubeworm’s life cycle. In terms of body condition, local populations in low flux habitat had lower body weight, greater body length, smaller anterior tube diameter, lower trophosome volume, lower total lipid volume, and lower branchial plume condition. With respect to reproductive condition, local populations in low flux habitat had lower proportions of reproductive individuals, less sperm transfer, lower gonad volume, and fewer mature oocytes; there was no difference in sperm development stages between high and low flux habitat. From the perspective of the individual, low flux tubeworms live longer, and lifetime reproductive output may be comparable to high flux tubeworms. However, turnover is higher in the high flux habitat, so reproductive output of high flux populations is greater than that of low flux populations. Juvenile recruitment was biased toward high flux habitat, although this trend was not significant and recruitment to low flux habitat was still notable. The differences between reproductive output and juvenile recruitment between these habitats support a source-sink model of population dynamics. From the perspective of the metapopulation, low flux habitat is inferior in its ability to support Ridgeia piscesae at all stages in the tubeworm’s life cycle. This distribution of relative contributions to the overall population of a key species in a Marine Protected Area (MPA) should factor into management decisions affecting MPA boundaries and use. / Graduate

Metagenomics has revealed that the marine microbial biosphere is immensely more diverse than originally considered, and is an almost untapped reservoir for the potential discovery of microbial natural products. Despite numerous advances in culturing, biosynthetic engineering and genomic-based screening efforts to uncover much of this diversity in relatively accessible environments, a high rediscovery rate has resulted in the investigation of unique, relatively unexplored ecosystems harboring phylogenetically diverse communities of marine organisms. The focus of this research was to establish a culture repository of microorganisms collected from the Red Sea and from deep-sea hydrothermal vents, and to assess their biosynthetic potential for the production of new chemical scaffolds. Cultivation of marine cyanobacteria from the Red Sea has led to the identification of five new cyclic depsipeptides, apratoxin H, grassypeptolides D and E, Ibu-epidemethoxylyngbyastin 3 and leptochelin, the latter possessing a unique chemical scaffold capable of binding metals. A collection of deep-sea hydrothermal vent sediment and microbial mat samples led to the isolation of 64 unique bacterial strains, with eight assigned as members of the order Actinomycetales. Importantly, these isolates, along with a collection of deep-vent invertebrates and microbes, have led to the development of methods for the collection, culturing and biological screening of organisms from this extreme environment for future natural products research. / Graduation date: 2013