Persistent organic pollutants (POPs) have attracted the attention of scientists because they have the following characteristics: long-distance transmission, persistence, bioaccumulation and chronic toxicity. Due to their high hydrophobicity, POPs are easily absorbed by the suspended particles in the marine environment. The suspended particles then settle into the soil may pass through the food chain, resulting in bioaccumulation and biomagnifications and causing potentially hazardous effects on the environment and human health. This study focuses on the analysis of the persistent organic pollutants in different parts of 10 kinds of benthic fishes, including the muscle and visceral mass, adjacent to Hsiao-Liu-Chiu. The samples were analyzed using accelerated solvent extraction (ASE), and alumina column purification. Fifteen polycyclic aromatic hydrocarbons (PAHs) were determined by using gas chromatograph / mass spectrometer (GC/MS). After florisil column purification, polychlorinated biphenyls (PCBs) and 18 organochlorine pesticides (OCPs) were determined by using gas chromatograph / electron-capture detector (GC/ECD). The results showed that the concentration of PAHs range from 15 to 195 ng/g dw, with low ringed (3 rings) PAHs at a higher proportion. Total PCB concentrations range from 16 to 237 ng/g dw. The content of PCBs in muscles mainly consists of low chlorine numbers (1 to 4 chloride) -based, and in visceral and eggs the chlorine number (6 and 7 chlorine) are higher. The concentrations of OCPs range from 13 to 127 ng/g dw. Among the hexachlorocyclohexane (HCH) series, £^-HCH has the highest proportion, indicating the continued use of Lidane in recent years. In addition to the variance in POP levels among different species of fishes, different tissues also have high variations in PAH, PCB and OCP levels.