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Molecular DimensionsMoss, H. H. 08 1900 (has links)
This study attempts to calculate the areas of the cross section and diameter of the CH3 group, COOH group, the length of the carbon chain, and the longtiudinal distance between carbon atoms for each of the three acids. It also attempts to develop a method of measuring the effective diameter of molecules of gases. Equations for these terms as given by MacDougall and experiments were performed and the data applied to the equation.
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PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODELSUBRAMANIAN, SUCHITHA January 2007 (has links)
No description available.
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Synthesis Of Sesquiterpenes Containing Two Vicinal Quaternary Carbon AtomsRao, M Srinivasa 05 1900 (has links)
Among nature's creation, terpenoids are more versatile and exciting natural products. In a remarkable display of synthetic ingenuity and creativity, nature has endowed terpenes, more so sesquiterpenes, with a bewildering array of carbocyclic frameworks with unusual assemblage of rings and functionality. This phenomenal structural diversity of this class of natural products makes them ideal targets for developing and testing new synthetic strategies for efficient articulation of carbocyclic frameworks. The present thesis entitled "Synthesis of sesquiterpenes containing two vicinal quaternary carbon atoms" describes the synthesis of a number of herbertane sesquiterpenoids, antimicrobial sesquiterpenes enokipodins A and Bf and spirocyclic sesquiterpenes acorone and isoacorones based on ring-closing metathesis reaction. In the thesis, the compounds are sequentially numbered (bold), and references are marked sequentially as superscript and listed at the end of thesis. All the figures included in-the thesis were obtained by DIRECT XEROX OF THE ORIGINAL NMR SPECTRA, and in some of them uninformative areas have been cut to save the space.
The herbertane sesquiterpenes are relatively a new class of aromatic sesquiterpenes, containing sterically crowded l-aryl-l,2,2-trimethylcyclopentane carbon framework incorporating two vicinal quaternary carbon atoms on a cyclopentane ring. The sterically crowded molecular framework coupled with the novel biological properties associated with the phenolic herbertanes made the herbertenoids challenging synthetic targets. In the present investigations, to begin with, a formal total synthesis of (±)-herbertenediol and (±)~ mastigophorenes A-D was developed starting from vanillin, based on a combination of Wacker oxidation and intramolecular aldol reactions.
A general ring-closing metathesis (RCM) based methodology was developed for a-cuparenone and the herbertane sesquiterpenes herbertene, a-herbertenol, f)~herbertenol and herbertenediol starting from the appropriately substituted acetophenones. The acetophenones on Horner-Wadsworth-Emmons reaction followed by regioselective reduction generated 5-arylbut-2-enols, which on Claisen rearrangement furnished 3~aryl-3-methylpent-4-enals. Grignard reaction with vinylmagnesium bromide followed by RCM reaction and oxidation transformed 3-aryl-3-methylpent~4-enals into 4~aryl-4-methylcylopentenones, which were further transformed into 3-aryl-2,2,3-trimethylcyclopentanones, thus, completing the formal synthesis of the sesquiterpenes (±)-a-cuparenone, (±)-herbertene, (±)-a-herbertenol, (±)-pherbertenol and (±)'herbertenediol.
In continuation of the synthesis of herbertane sesquiterpenes, a Claisen rearrangement and RCM reaction based strategy was developed for the synthesis of (±)~lt14-herbertenediol and (±)-71-epi-herbertenolide, and marine sesquiterpenes {£)-tochuinyl acetate and (±)-dihydrotochuinyl acetate. Ortho ester Claisen rearrangement of 3-arylbut-2~ enols generated 3-aryl~3-methylpent-4-enoates, which on allylation and RCM reactions generated 2~methyl-2-arylcyclopent-3-encarboxylates. Stereoselective alkylation followed by functional group manipulations transformed 2-methyl'2-arylcyclopent'3-encarboxylates into the marine sesquiterpenes (±)-tochuinyl acetate and (±)-dihydrotochuinyl acetate, (±)-ll-epiherbertenolide and (±)~l,,14-herbertenediol.
Total synthesis of (±)-lt13-herbertenediol has been accomplished employing an RCM reaction as the key step. The requisite starting material 2-methoxy-5-methylphenyl acetate was obtained from p-cresol. Two sequential allylation reactions followed by RCM reaction transformed 2-methoxy-5-methylphenyl acetate into 1 -arylcyclopent-3-en-l-carboxylate. Allylic oxidation and alkylation followed by functional group manipulation transformed I-arylcyclopent-3-en-l-carboxylate into (±)-U3-herbertenediol.
For the enantiospecific synthesis of (+)-a-herbertenol, an aromatic Claisen rearrangement based strategy was developed starting from the readily available monoterpene (R)-limonene. To begin with, limonene was converted into 5-isopropenyl-2-methylcyclopent-l-enemethanol which on Mitsunobu reaction with p-cresol followed by Claisen rearrangement of the resultant aryl ether generated a mixture of3-isopropenyl-3a,7,8b-trimethyl-2,3,3a,8b-tetrahydro-1H-cyclopenta[b]benzofurans. Degradation of the isopropenyl group and cleavage of the central ether ring transformed the major cyclopentabenzofuran into 3-aryl-2,3-dimethylcyclopentanone, which was further elaborated into (+)-a-herbertenol.
The general RCM reaction methodology developed for the herbertenoids has been further extended to the first total synthesis of the antimicrobial sesquiterpenes (±)~ enokipodins A andB, and a formal total syntheses of (±)-cuparene-l,4-diol, (±)-cuparene-lt4-quinone and (±)~HM-1 methyl ether star*w« from 2,5~dimethoxy~4-methylacetophenone. It has been further extended to the formal synthesis of spirocydic sesquiterpenes (±)-acorone and (±)-isoacorones starting from cyclohexane-1,4-dione.
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Ireland-Claisen Rearrangement Based Strategy To Sesquiterpenes Containing Vicinal Quaternary Carbon AtomsVasanthalakshmi, B 03 1900 (has links)
Among Nature's creation, terpenoids are more versatile and exciting natural products. In a remarkable display of synthetic ingenuity and creativity, nature has endowed terpenes with a bewildering array of carbocyclic frameworks with unusual assemblage of rings and functionalities. This phenomenal structural diversity of terpenes makes them ideal targets for developing and testing new synthetic strategies for efficient articulation of carbocyclic frameworks. The thesis entitled “Ireland-Claisen Rearrangement Based Strategy to Sesquiterpenes Containing Vicinal Quaternary Carbon Atoms” demonstrates the utility of the Ireland ester Claisen rearrangement and RCM reactions for the synthesis of a variety of sesquiterpenes containing vicinal quaternary carbon atoms. The results are described in five different sections, viz., (a) Synthesis of herbertene-1,13-diol and α-herbertenol; (b) Total syntheses of herbertenolide, herberteneacetal, herbertene-1,14-diol and herbertene-1,15-diol;
(c) First total synthesis of the spirobenzofuran isolated from Acremonium sp. HKI 0230; (d) Total synthesis of lagopodin A; and (e) Synthesis of Laurencenone C, α- and β-chamigrenes. Complete details of the experimental procedures and the spectroscopic data were provided in a different section. A brief introduction is provided wherever appropriate to keep the present work in proper perspective. The compounds are sequentially numbered (bold), references are marked sequentially as superscripts and listed in the last section of the thesis. All the spectra included in the thesis were obtained by xeroxing the original NMR spectra.
To begin with a short and efficient synthesis of herbertene-1,13-diol and α-herbertenol has been achieved starting from 2-allyl-4-methylanisole. Ireland ester Claisen rearrangement of the dimethylallyl 2-arylpent-4-enoate, obtained from p-cresol in seven steps, followed by RCM reaction of the resultant diene generated 1-aryl-1,2,2-trimethylcyclopent-3-enecarbo-xylate, which on functional group transformations provided (±)-herbertene-1,13-diol and (±)-α-herbertenol.
Ireland ester Claisen rearrangement of E-3-(2-methoxy-5-methylphenyl)but-2-en-1-yl 2-methylpent-4-enoate furnished a stereoisomeric mixture of the dieneesters, which on RCM reaction generated an epimeric mixture of 2-aryl-1,2-dimethylcyclopent-3-enecarboxylates. These esters were further elaborated into (±)-herbertene-1,14-diol, (±)-herbertene-1,15-diol and (±)-herberteneacetal via epi-herbertenolide and (±)-herbertenolide.
First total synthesis of a spirobenzofuran isolated from Acremonium sp. HKI 0230 has been accomplished starting from 2,5-dimethoxy-4-methylphenylacetate, confirming the structure of the natural product. Ireland ester Claisen rearrangement of dimethylallyl 2-(2,5-dimethoxy-4-methylphenyl)pent-4-enoate followed by RCM reaction and demethylation furnished a lactone, cyclopentaspirobenzofuranone, which on further functional group transformations completed the first total synthesis of the spirobenzofuran.
1-(2,5-Dimethoxy-4-methylphenyl)-1,2-dimethylcyclopent-3-enecarboxylate, an intermediate in the synthesis of spirobenzofuran, has been further elaborated into 1-aryl-1,2,2-trimethylcyclopent-3-ene, which on functional group transformations transformed into (±)lagopodin A and (±)-enokipodins A and B.
Efficient total syntheses of laurencenone C, α-chamigrene and β-chamigrenes have been accomplished employing an Ireland ester Claisen rearrangement and RCM reaction as key steps starting from the Diels-Alder adduct of isoprene and acrylic acid. Ireland ester Claisen rearrangement of dimethylallyl cyclohex-3-enecarboxylate generated methyl 1-(1',1'-dimethylallyl)cyclohex-3-enecarboxylate, which was further elaborated into 5,5,9-trimethyl-spiro[5.5]undeca-3,8-dien-1-ol employing an RCM reaction as the key step. The spirodienol on further functional group transformations generated (±)-laurencenone C, (±)-α-chamigrene and (±)-β-chamigrene.
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