The final stage of the cell cycle is cell division by cytokinesis, when the cell physically separates into two daughter cells. Improper timing or location of the division site results in incorrect segregation of chromosomes and thus genetically unstable aneuploid cells, which is associated with tumorigenesis. Cytokinesis in animal, fungal and amoeboid cells occurs through the assembly and constriction of an actomyosin contractile ring, a mechanism that dates back about one billion years in the common ancestor of these organisms. However, it is not well understood how the ring generates tension or how the rate of ring constriction is set. Long ago a sliding filament mechanism similar to skeletal muscle was proposed, but definitive evidence for muscle-like sarcomeric order in the ring is lacking. Here we build mathematical models of cytokinesis in the fission yeast Schizosaccharomyces pombe, where the most complete inventory of more than 150 cytokinesis genes have been documented. The models explicitly represent proteins in the contractile ring such as formin, myosin, actin, α-actinin, etc. and implements their quantities, biomechanical properties and organizations from the best available experimental information. At the same time, the models adopt coarse-grain approaches that are able to describe the collective behaviors of thousands of ring components, which include tension production, constriction, and disassembly of the ring. In the first part of this thesis, we modeled the extraordinarily rapid constriction of the partially unanchored ring in fission yeast cell ghosts. Experiments on isolated fission yeast rings showed sections of ring unanchoring from the membrane and shortening ~30-fold faster than normal (1). We demonstrated that anchoring of actin to the plasma membrane generates tension in the fission yeast cytokinetic ring by showing (1) unanchored segments in these experiments were tensionless, and (2) only a barbed-end anchoring of actin can generate tension in the normally anchored ring, and can explain the extraordinary behavior of unanchored segments. Molecularly explicit simulations accurately reproduced experimental constriction rates, and showed a novel non-contractile reeling-in mechanism by which the unanchored segment shortens, despite being tensionless. In the second part of this thesis, we built a highly coarse-grained model to study how ring tension is generated and how structural stability is maintained. Recently, a super-resolution microscopy study of the fission yeast ring revealed that myosins and formins that nucleate actin filaments colocalize in plasma membrane-anchored complexes called nodes in the constricting ring (2). The nodes move bidirectionally around the ring. Here we construct and analyze a coarse-grained mathematical model of the fission yeast ring to explore essential consequences of the recently discovered ring ultrastructure. The model reproduces experimentally measured values of ring tension, explains why nodes move bidirectionally and shows that tension is generated by myosin pulling on barbed-end-anchored actin filaments in a stochastic sliding-filament mechanism. This mechanism is not based on an ordered sarcomeric organization. We show that the ring is vulnerable to intrinsic contractile instabilities, and protection from these instabilities and organizational homeostasis require both component turnover and anchoring of components to the plasma membrane. In the third part of this thesis, we measured ring tension in fission yeast protoplasts. We found ~650 pN tension in wild type cells, ~65% the normal tension in myp2 deletion mutants and ~40% normal tension in myo2-E1 mutant cells with negligible ATPase activity and reduced actin binding. To understand the relation between organization and tension, we developed a molecularly explicit simulation of the fission yeast ring with the above organization. Our simulations revealed a clear division of labor between the 2 myosin-II isoforms, which maintains organization and maximal tension. (1) Myo2 anchors the ring to the plasma membrane, and transmits ring tension to the membrane. (2) Myo2, extending ~100 nm away from the membrane, bundles half (~25) of the actin filaments in the cross-section due to filament packing constraints, as only ~25 filaments are within reach. (3) To increase tension requires that the ring be thickened, as tensions in the ~25 membrane-proximal filaments are close to fracture. (4) Unanchored Myp2 indeed enables thickening, by bundling an additional ~25 filaments and doubling tension. Anchoring of these filaments to the membrane is indirect, via filaments shared with the anchored Myo2. (5) In simulated myo2-E1 rings ~20% of the actin filaments peeled away from the ring and formed Myp2-dressed bridges, as observed experimentally in myo2-E1 cells. (6) The organization in simulated Δmyp2 rings was highly disrupted, with ~ 50% of the actin filaments unbundled. Therefore, beyond their widely recognized job to pull actin and generate tension, myosin-II isoforms are vital crosslinking organizational elements of the ring. Two isoforms in the ring cooperate to organize the ring for maximal actomyosin interaction and tension.

After naïve lymphocytes are activated by foreign antigens, they yield cellular progeny with diverse functions, including memory cells, effector cells, and precursors of germinal center B cells. However, it remains unclear whether a naïve lymphocyte is capable of generating daughter cells with multiple fates or multiple naive cells are activated and each give rise to daughter cells with different cell fates. This dissertation analyzes the role of asymmetric cell division in the generation of effector lymphocytes and maintenance of progenitor cells. Our data provide evidence that daughter cells exhibit differential mitochondrial stasis and inherit different amounts of glucose transporters, which is coupled to distinct metabolic and transcriptional program in the sibling cells. To uncover the links between mitochondrial stasis, transcription network reprogramming and cell fate, we perturbed mitochondrial clearance with pharmacological and genetic approaches. I found that the treatments, which impaired mitochondrial function, increased the differentiation of B cells and T cells into effector subsets. Thus, we hypothesize that mitochondrial stasis could be a trigger for effector cell differentiation. To further explore the mechanism for aged mitochondria-induced shifts in transcriptional and metabolic programs, we used reactive oxygen species (ROS) scavengers and glycolysis inhibitors to demonstrate that mitochondria function and the expressions of lineage-specific transcription factors crosstalk through ROS-mediated signaling and activating AMPK. ROS scavenger treatments helped to maintain the progenitor population and suppressed the differentiation of effector subsets, whereas effector cell differentiation was boosted in the AMPK-α1 knockout. These results suggest mitochondrial stress-induced ROS is required for repressing Pax5 and increasing IRF4. In addition to showing mitochondrial stasis’ connection to cell fate, this dissertation also demonstrates the linkage between phosphatidylinositol-3-kinases and glucose transporter 1 (Glut1) in establishing polarity in dividing cells and in transcriptional reprogramming. In sum, this dissertation suggests that asymmetric mitochondrial stasis and nutrient up-take could be part of the driving force of cell fate owing to self-reinforcement and reciprocal inhibition between anabolism and catabolism. These results shed light on the deterministic mechanism of effector cell differentiation and provide clues to the basis of maintenance of self-renewal by activated lymphocytes. These findings could be beneficial for producing memory cells and preventing effector cell exhaustion phenotype in a chronic infection or in cancer microenvironment.

Cell division relies on many steps, precisely synchronised, to ensure the fidelity of chromosome segregation. To achieve such complex and multiple functions, cells have evolved mechanisms by which one protein can participate in numerous events on the cell life. Over the past few years, an increasing number of functions have been assigned to the proteins of the nuclear pore complex (NPC) also called nucleoporins. NPCs are large complexes studded in the nuclear envelope, which control the nucleocytoplasmic transport. It is now known that nucleoporins participate in spindle assembly, kinetochore organisation, spindle assembly checkpoint, and all processes important for genome integrity maintenance. This work demonstrates that the nucleoporin ALADIN participates in mitosis, meiosis and in cilia. In both mitosis and meiosis, ALADIN is important for proper spindle assembly. In mitosis, it was also discovered that ALADIN is a novel factor in the spatial regulation of the mitotic regulator Aurora A kinase. Without ALADIN, active Aurora A spreads from centrosomes onto spindle microtubules, which affects the distribution of a subset of microtubule regulators and slows spindle assembly and chromosome alignment. Interestingly, mutations in ALADIN causes triple A syndrome and some of the mitotic phenotypes observed after ALADIN depletion also occur in cells from triple A syndrome patients. In meiosis, ALADIN contributes to trigger the resumption of meiosis in female mouse. Impairment of ALADIN from mouse oocyte slows spindle assembly, migration and reduces oocytes ability to extrude polar bodies during meiosis I, which concomitantly affects the robustness of oocyte maturation and impairs mouse embryo development. Nucleoporins were also found at the base of the cilia, a centriole-derived organelle that participates in differentiation, migration, cell growth from development to adulthood. Here it is shown that ALADIN is also localised at the base of the cilia. With this work, new ALADIN’s functions have been identified across cell division, as well as uncovered an unexpected relation between triple A syndrome and cell division.

Wnt/β-catenin signaling and asymmetric cell division are essential to development and homeostasis in metazoans; these two mechanisms join into one in the Wnt/β-catenin Asymmetry (WβA) pathway in the nematode C. elegans. In WβA, nuclear asymmetry of two β-catenins, SYS-1 and WRM-1, is achieved by two parallel pathways that reduce SYS-1 and WRM-1 levels in the anterior daughter and increase their levels in the posterior daughter. While it is known that many conserved regulators of Wnt signaling are involved in WβA, how these components interact to achieve SYS-1 and WRM-1 asymmetry is not well understood. In this thesis, genetics, transgenics, and live-imaging are used to demonstrate how WβA regulates it’s multiple outputs. It is shown that APR-1/APC and PRY-1/Axin control asymmetric localization of both SYS-1 and WRM-1, and that Wnt signaling explicitly controls APR-1 regulation of either β-catenin via the kinase KIN-19/CKIα. Additionally, it is demonstrated that the Dishevelled proteins DSH-2 and MIG-5 are positive regulators of SYS-1, but negative regulators of WRM-1. Additionally, data from a screen designed to identify novel kinase regulators of Wnt signaling/asymmetric cell division is presented. Overall, this thesis takes current knowledge of conserved Wnt signaling component function and provides a compelling model of how those components are adapted to asymmetric cell division.

<p>Archaea is the third domain of life, discovered only thirty years ago. In a microscope archaea appear indistinguishable from bacteria, but they have been shown to be more closely related to eukaryotes than to bacteria. Especially central information processing is homologous to that of eukaryotes. The archaea, previously thought to be limited to extreme environments, constitute a large part of life on Earth to an extent that has only begun to be understood. Despite their abundance little is known about several central cell-cycle features, such as cell division and genome segregation.</p><p>For this thesis, a comprehensive study of the cell cycle in the model archaeon <i>Sulfolobus acidocaldarius</i> was performed, describing the majority of its cell-cycle regulated genes. Several known DNA replication genes, as well as genes previously not known to have a role in the cell cycle, displayed cyclic transcription. Several transcription factors, kinases and DNA sequence elements were identified as cell-cycle regulatory elements. Among the most important findings were putative cell division and genome segregation machineries.</p><p><i>Sulfolobus</i> species were discovered to have three origins of replication, constituting the first known prokaryotes with multiple origins. All origins initiate replication in a synchronous manner. Cdc6 proteins were shown to bind to origin recognition boxes conserved across the Archaea domain. Two Cdc6 proteins function as replication initiators, while a third paralog is implicated as a negative factor. Replication was shown to proceed at a rate similar to that of eukaryotes.</p><p>A particular type of cell cycle organization was found to be unusually conserved in the Crenachaeota phylum. All the studied species displayed a short prereplicative phase and a long postreplicative phase, and cycle between one and two genome copies. Genome sizes were determined for several species. The euryarchaeon <i>Methanothermobacter thermautotrophicus</i> was also studied, and it was shown to initiate genome segregation during, or just after, replication. In contrast to the crenarchaea it never displayed a single genome copy per cell.</p>

Lépilepsie myoclonique juvénile (EMJ) est un syndrome épileptique très répandu qui appartient aux épilepsies idiopathiques généralisées. Il se caractérise par des secousses myocloniques et des crises tonico-cloniques débutant pendant ladolescence, entre 12 et 18 ans. Son étiologie est génétique et impliquerait linteraction de plusieurs gènes. Des études de liaisons géniques ont permis lindentification, dans un gène localisé en 6p12, de cinq mutations faux-sens co-ségrégées avec le phénotype de EMJ. Ce gène code une nouvelle protéine, dénommée EFHC1, comportant un motif EF-hand, domaine potentiel de liaison au calcium et trois domaines DM10, de fonction inconnue. L'objectif de notre travail consiste à étudier les propriétés biochimiques et fonctionnelles d'EFHC1. Nous avons dabord étudié la localisation subcellulaire dEFHC1 dans différentes lignées cellulaires (HEK-293, HeLa et COS-7) au moyen de deux approches complèmentaires. Dune part nous avons surexprimé la protéine couplée à lEGFP, un marqueur fluorescent permettant se visualisation et dautre part, nous avons étudié la localisation de la protéine endogène au moyen dun anticorps spécifique. Dans les cellules en mitose, EFHC1 montre clairement une association avec le fuseau mitotique, spécialement au niveau des pôles et du corpuscule de Fleming pendant la cytokinèse. EFHC1 co-localise également avec le centrosome dans les cellules en interphase et en mitose. Dans le but de déterminer la région d'EFHC1 impliquée dans lassociation au fuseau mitotique, nous avons effectué des analyses au moyen de différentes formes tronquées de la protéine couplées à lEGFP. Les résultats indiquent que lextrémité N-terminale d'EFHC1, contenant les 45 premiers acides aminés de la protéine est cruciale pour ladressage au fuseau mitotique. Nous avons démontré, au moyen dexpériences dimmunoprécipitations et de co-sédimentation de microtubules, une association directe dEFHC1 avec lα-tubuline, composant des microtubules. Cette interaction est médiée par un nouveau domaine dassociation aux microtubules situé au niveau de lextrémité N-terminale de la protéine, entre les acides aminés 1 et 45. Dautre part, nous avons mis en évidence un rôle important dEFHC1 dans la régulation de la division cellulaire. En effet, la surexpression dune forme tronquée dEFHC1 ne contenant que les 45 premiers acides aminés de la protéine, agissant comme un dominant-négatif, ainsi que linhibition dexpression dEFHC1 par expression de shRNAs induit de façon significative des fuseaux mitotiques anormaux (fuseaux unipolaires, anomalies de condensation des chromosomes au niveau de la plaque équatoriale pendant la métaphase). De plus, nous avons observé que les cellules invalidées en EFHC1 présentaient un défaut de progression mitotique résultant du blocage des cellules en prométaphase anormale, conduisant à une augmentation significative de lindex mitotique (% de cellules en mitose) et à de lapoptose. Enfin, nous avons démontré un rôle dEFHC1 dans la corticogenèse cérébrale. En effet, linvalidation dEFHC1 (shRNAs et dominants-négatifs) dans le néocortex de rat en développement au moyen des techniques délectroporations ex vivo et in utero conduit à un défaut de migration neuronale radiaire. Nous avons montré que celui-ci résultait dune diminution de sortie de cycle cellulaire des cellules progénitrices neuronales conduisant à une accumulation de celles-ci, dune altération de larchitecture des prolongements de la glie radiaire, dune augmentation de la mort cellulaire par apoptose et dun défaut de locomotion des neurones post-mitotiques.

Archaea is the third domain of life, discovered only thirty years ago. In a microscope archaea appear indistinguishable from bacteria, but they have been shown to be more closely related to eukaryotes than to bacteria. Especially central information processing is homologous to that of eukaryotes. The archaea, previously thought to be limited to extreme environments, constitute a large part of life on Earth to an extent that has only begun to be understood. Despite their abundance little is known about several central cell-cycle features, such as cell division and genome segregation. For this thesis, a comprehensive study of the cell cycle in the model archaeon Sulfolobus acidocaldarius was performed, describing the majority of its cell-cycle regulated genes. Several known DNA replication genes, as well as genes previously not known to have a role in the cell cycle, displayed cyclic transcription. Several transcription factors, kinases and DNA sequence elements were identified as cell-cycle regulatory elements. Among the most important findings were putative cell division and genome segregation machineries. Sulfolobus species were discovered to have three origins of replication, constituting the first known prokaryotes with multiple origins. All origins initiate replication in a synchronous manner. Cdc6 proteins were shown to bind to origin recognition boxes conserved across the Archaea domain. Two Cdc6 proteins function as replication initiators, while a third paralog is implicated as a negative factor. Replication was shown to proceed at a rate similar to that of eukaryotes. A particular type of cell cycle organization was found to be unusually conserved in the Crenachaeota phylum. All the studied species displayed a short prereplicative phase and a long postreplicative phase, and cycle between one and two genome copies. Genome sizes were determined for several species. The euryarchaeon Methanothermobacter thermautotrophicus was also studied, and it was shown to initiate genome segregation during, or just after, replication. In contrast to the crenarchaea it never displayed a single genome copy per cell.

Tumor bearing mice pre-treated with autochthonous and syngeneic inocula were found to have an enhanced immune response. Mitotic indices of the tumors from three experimental groups were significantly lower than those of the two control groups. The treated control group which received Freund's adjuvant also had a significantly lowered mitotic index, but was still significantly higher than the three experimental groups.The immune response was evidenced by reticuloendothelial involvement and anaphylactic reactions in various animals. Abnormalities found in the livers consisting of portal infiltration of reticular calls and megakaryocytes were observed. The tumor sections observed showed increased lymphocytic infiltration,There were no significant differences in the mitotic indices between the syngeneic and autochthonous recipients. A lack of antigenic differences in the tumors utilized is thus indicative of this finding.Ball State UniversityMuncie, IN 47306

The cyanobacterium Synechococcus elongatus builds a circadian clock on an oscillator comprised of three proteins, KaiA, KaiB, and KaiC, which can recapitulate a circadian rhythm of KaiC phosphorylation in vitro. The molecular structures of all three proteins are known, and the phosphorylation steps of KaiC, the interaction dynamics among the three Kai proteins, and a weak ATPase activity of KaiC have all been characterized. A mutant of a clock gene in the input pathway, cikA, has a cell division defect, and the circadian clock inhibits the cell cycle for a short period of time during each cycle. However, the interaction between the circadian cycle and the cell cycle and the molecular mechanisms underlying it have been poorly understood. In addition, the subcellular localization of clock proteins and possible localization dynamics, which are critical in the timing circuit of eukaryotic clock systems and might also shed light on the interaction between circadian cycle and cell cycle, have remained largely unknown. A combination of genetics, cell biology, and microscopy techniques has been employed to investigate both questions. This work showed that the cell division defect of a cikA mutant is a function of the circadian clock. High ATPase activity of KaiC coincides with the inhibition of cytokinesis by the circadian clock. CikA likely represses KaiC's ATPase activity through an unknown protein, which in cikA's absence stimulates both the ATPase and autokinase activities independently of KaiA or KaiB. SasA-RpaA acts as an output in the control of cell division, and the localization of FtsZ is the target, although it still remains to be seen how RpaA, directly or indirectly, inhibits FtsZ localization. The project also showed that clock proteins are localized to the cell poles. KaiC is targeted to the cell pole in a phosphorylation-dependent manner. KaiB and CikA are also found at the poles independently of KaiC. KaiA likely only localizes to the cell pole during the dephosphorylation phase, which is dependent on both KaiB and KaiC, specifically on the phosphorylation of KaiC at S431. Overall, significant progress was made in both areas and this project sheds light on how the circadian oscillator operates in cyanobacterial cells and interacts with another fundamental cellular function.

Thesis (Ph. D.)--University of Washington, 2000. / Vita. Includes bibliographical references (leaves 70-81).