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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

A Mathematical Model of Amoeboid Cell Motion as a Continuous-Time Markov Process

Despain, Lynnae 01 March 2015 (has links) (PDF)
Understanding cell motion facilitates the understanding of many biological processes such as wound healing and cancer growth. Constructing mathematical models that replicate amoeboid cell motion can help us understand and make predictions about real-world cell movement. We review a force-based model of cell motion that considers a cell as a nucleus and several adhesion sites connected to the nucleus by springs. In this model, the cell moves as the adhesion sites attach to and detach from a substrate. This model is then reformulated as a random process that tracks the attachment characteristic (attached or detached) of each adhesion site, the location of each adhesion site, and the centroid of the attached sites. It is shown that this random process is a continuous-time jump-type Markov process and that the sub-process that counts the number of attached adhesion sites is also a Markov process with an attracting invariant distribution. Under certain hypotheses, we derive a formula for the velocity of the expected location of the centroid.
2

Mean Square Displacement for a Discrete Centroid Model of Cell Motion and a Mathematical Analysis of Focal Adhesion Lifetimes and Their Effect on Cell Motility

Rosen, Mary Ellen Furner 09 February 2021 (has links)
One of the characteristics that distinguishes living things from non-living things is motility. On the cellular level, the motility or non-motility of different types of cells can be life building, life-saving or life-threatening. A thorough study of cell motion is needed to help understand the underlying mechanisms that enhance or prohibit cell motion. We introduce a discrete centroid model of cell motion in the context of a generalized random walk. We find an approximation for the theoretical mean square displacement (MSD) that uses a subset of the state space to estimate the MSD for the entire space. We give some intuition as to why this is an unexpectedly good estimate. A lower and upper bound for the MSD is also given. We extend the centroid model to an ODE model and use it to analyze the distribution of focal adhesion (FA) lifetimes gathered from experimental data. We found that in all but one case a unimodal, non-symmetric gamma distribution is a good match for the experimental data. We use a detach-rate function in the ODE model to determine how long a FA will persist before it detaches. A detach-rate function that is dependent on both force and time produces distributions with a best fit gamma curve that closely matches the data. Using the data gathered from the matching simulations, we calculate both the cell speed and mean FA lifetime and compare them. Where available, we also compare this relationship to that of the experimental data and find that the simulation reasonably matches it in most cases. In both the simulations and experimental data, the cell speed and mean FA lifetime are related, with longer mean lifetimes being indicative of slower speeds. We suspect that one of the main predictors of cell speed for migrating cells is the distribution of the FA lifetimes.
3

Mean Square Displacement for a Discrete Centroid Model of Cell Motion and a Mathematical Analysis of Focal Adhesion Lifetimes and Their Effect on Cell Motility

Rosen, Mary Ellen Furner 09 February 2021 (has links)
One of the characteristics that distinguishes living things from non-living things is motility. On the cellular level, the motility or non-motility of different types of cells can be life building, life-saving or life-threatening. A thorough study of cell motion is needed to help understand the underlying mechanisms that enhance or prohibit cell motion. We introduce a discrete centroid model of cell motion in the context of a generalized random walk. We find an approximation for the theoretical mean square displacement (MSD) that uses a subset of the state space to estimate the MSD for the entire space. We give some intuition as to why this is an unexpectedly good estimate. A lower and upper bound for the MSD is also given. We extend the centroid model to an ODE model and use it to analyze the distribution of focal adhesion (FA) lifetimes gathered from experimental data. We found that in all but one case a unimodal, non-symmetric gamma distribution is a good match for the experimental data. We use a detach-rate function in the ODE model to determine how long a FA will persist before it detaches. A detach-rate function that is dependent on both force and time produces distributions with a best fit gamma curve that closely matches the data. Using the data gathered from the matching simulations, we calculate both the cell speed and mean FA lifetime and compare them. Where available, we also compare this relationship to that of the experimental data and find that the simulation reasonably matches it in most cases. In both the simulations and experimental data, the cell speed and mean FA lifetime are related, with longer mean lifetimes being indicative of slower speeds. We suspect that one of the main predictors of cell speed for migrating cells is the distribution of the FA lifetimes.

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