<p> Understanding how to balance human well-being and ecological integrity is one of the fundamental challenges in conservation and natural resource management. As our human-footprint on ecosystems expands and deepens, we are increasingly realizing that human well-being is crucial to understanding social-ecological systems and managing them sustainably.</p><p> In my first chapter I add to this literature by extending a theoretical model to examine the effects of two biophysical stressors on a marine species. While this model was developed to understand how harvest and climate change may interact to affect species viability, the model instead emphasized the sensitivity of the results to assumptions about human behavior. This result adds to a small, but growing, body of literature that demonstrates the importance of considering resource-users&rsquo; dynamics when attempting to predict outcomes for biophysical systems.</p><p> Despite conceptual advances in linking human-wellbeing to biophysical dynamics, a major challenge exists in operationalizing these conceptual framings. In my second chapter I use the US West Coast commercial fisheries system as a case study and developed a novel network approach of linking the social system (i.e. fishing communities) to the ecological system (the fish). This approach made use of data collected by management, making it immediately operational for all managed fisheries in the US. Such a conceptual framework represents a major step forward for mapping and quantifying these linkages between social and natural systems. I add to this work by analyzing these resultant networks to show that the topological structure and modularity varied non-randomly, providing additional features that may be useful for mangers seeking to balance human well-being with sustainable populations of fish.</p><p> In my third chapter I analyzed patterns of participation across the US West Coast commercial fisheries before and after a major management change in a single fishery. Using individual- and fishing community-level analyses, using the framework described above, I show that the policy affected how fishermen shift their effort across fisheries at the individual level, but community level attributes remain unchanged. This work demonstrates how such social-ecological system level policy analysis may be conducted.</p><p> Overall this dissertation helps move us towards a set of tools managers can use to evaluate policy efficacy in commercial fisheries in the face of rapid environmental change while balancing ecological integrity and human well-being.</p>

Invasive species are one of the major threats to biodiversity and understanding the effects any one invasive species has on members of its new ecosystem can help land managers decide how to best use their limited resources. This study attempted to show the effect Cuban Treefrogs (Osteopilus Septentrionalis) were having on native Florida hylids. For a year, Cuban Treefrogs were removed from three cypress domes and monitored in three other cypress domes, a change in the native population in the experimental domes was the eventual desired effect. Due to weather issues and low native hylid numbers no effect was shown, however due to environmental constraints an effect could not be ruled out either. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2015. / FAU Electronic Theses and Dissertations Collection

The spotted turtle (<i>Clemmys guttata</i>) and Blanding’s turtle (<i>Emydoidea blandingii</i>) are two state-endangered species in Indiana whose populations are in decline. Historically, both species were found across the northern portion of Indiana in various wetland habitats. There are multiple causes of population decline for both species, including habitat fragmentation, habitat loss and degradation, urban development and encroachment, poaching, and road mortality. Despite efforts to record these species across the state, there has been no intensive population assessments. Based on this need, I conducted both visual encounter surveys across the state and used Maximum Entropy (MaxEnt) modeling to facilitate understanding the current distribution of both species in Indiana. Twenty-three locations were visited and surveyed in Indiana, with trapping being conducted at an additional four locations where populations were known to be larger. Surveys aided in delineation of six populations of Blanding’s turtles and five populations of spotted turtles. A total of 69 Blanding’s turtles and 70 spotted turtles were observed between surveying and trapping. Delineated populations were mainly found in the northern third of Indiana. This data and other occurrences were used to predict suitable habitat across Indiana. The Blanding’s turtle models were sufficiently resolved to predict potential localities or potential sites for focused management or repatriation. Spotted turtle model performance reflected the need for more samples, but also the likelihood of fewer numbers due to declining habitat availability. Both Blanding’s turtle and spotted turtle models argue for the need of more intense survey efforts based on historical occurrences, as well as restoration efforts across the state. Most models for both species were observed to have a trend towards suitable habitat in the northern third of the state, correlating with the results of the survey efforts. The results of this project indicate that Blanding’s turtle and spotted turtle populations are still in decline likely due to limited habitat availability.

A detecção é um fator que afeta a magnitude estimada de fauna atropelada, informação relevante nos estudos e trabalhos de biologia da conservação. Em rodovias, a estimativa da detecção é afetada por diferentes elementos, como os tipos de pavimento; os atributos das carcaças; as particularidades dos diferentes observadores e o método utilizado para aferição. Nosso trabalho avalia essas questões, especifica o esforço amostral e corrige a estimativa de fauna atropelada em relação à detecção. Encontramos diferença na estimativa de detecção entre os diferentes pavimentos; entre as carcaças similares e contrastantes ao substrato; entre os diferentes observadores e verificamos que através do monitoramento a pé não se detecta a totalidade das carcaças. Esses resultados e a estimativa de fauna atropelada corrigida comprovam a importância da aferição da detecção antes e depois da pavimentação das rodovias, através de método experimental. Sendo que o experimento deve contemplar a implantação de diferentes carcaças e ser realizado pelas equipes que participaram dos monitoramentos de fauna. / Detection is a factor that affects the estimated magnitude of the roadkill and is relevant information in biological conservation studies. In roads, the detection estimation is affected by many factors, such as type of paving, the carcasses traits, the particularities of different observers and the method used for measurement. Our study evaluates these questions, specify the sample effort and correct the roadkill magnitude in relation to detection. We found differences in the estimation of detection between the different kinds of paving, between carcasses similar to the paving and between those contrasting to the substrate. We also found differences between different observers and thus monitoring by walking does not detect all carcasses. These results and the roadkill magnitude corrected demonstrate the importance of the standardization of the detection before and after the paving of roads, via experimental methods. However, the experiment should include the implementation of different substrates and should be carried out by the teams that have already participated in the monitoring of fauna.

Madagascar’s lemurs are the most endangered group of mammals in the world, with 94% of species threatened with extinction. Forest loss is one the greatest threat to these arboreal primates, but hunting, habitat degradation, and climate change also threaten their survival. Lemurs are a diverse group of more than 100 species; and their ecological traits shape how species respond to anthropogenic pressure. Incorporating knowledge of species’ ecological niches and evolutionary histories can contextualize threats and improve conservation assessments. In this dissertation, I investigate what constitutes suitable habitat for lemurs in light of the threats present, their sensitivity to forest fragmentation, their dispersal ability, and their ecological uniqueness. I obtained data about lemur distributions in two ways. First, I conducted field surveys of the Critically Endangered blue-eyed black lemur (Eulemur flavifrons), which only occurs in the ecotone between eastern rainforest and western dry forest in the Sahamalaza region. I also surveyed the range of sister species, the black lemur (E. macaco), which inhabits nearby eastern rainforest in the Manogarivo region. I focused on areas that have not been surveyed recently and on the poorly studied boundary between the species to collect observations from the breadth of these species’ ecological ranges. I also documented threats, including incursions into protected areas, and collected fecal samples to test whether whole genomes could be obtained noninvasively for analyses of local adaptation in these species. Second, I searched online databases and published literature for GPS localities for all species of lemur. I used these records, along with the ones collected in the field, to construct ecological niche models for nearly all species of lemur using Maxent. For the blue-eyed black lemur and the black lemur, I estimated the remaining area they can occupy based on these models and the threat survey data. Next, I examined the role of not just forest loss, but forest degradation, in determining where lemur species occur. I used high-resolution forest cover maps to determine lemurs’ tolerance for characteristics of degraded forest, including distance to the edge and mean patch size. I then limited species niche model to only intact, forested habitat. Lastly, using the sportive lemurs (genus Lepilemur) as an example, I evaluate how the inability to disperse across large rivers has influenced ecological niche diversity. I also examine what limited dispersal ability will mean for these species as climate change causes their ranges to shift. Field surveys in the Sahamalaza and Manongarivo regions revealed extensive threats to blue-eyed black lemurs, from traps to cattle incursions and fire. I found no evidence of sympatry, but did locate an undocumented population of E. flavifrons north of the Andranomalaza River. Madagascar National Parks (MNP) managed protected areas appear to have less human incursion than NGO-managed protected areas. Further investigation of the ecological distinctiveness of these species is possible via non-invasive methods: I sequenced whole genomes at 2.3x coverage from eight of the fecal samples collected during this study. While SNPs indicating a loss of function did not reveal any patterns, sequencing additional samples could make studies of local adaptation and population genetic diversity possible. At the regional scale, forest conversion is a grave threat to lemurs. When forest loss and degradation are considered in habitat models, lemur species have lost 51% of their habitat in the last 30 years. Proximity to a forest edge rendered more forested areas too degraded for lemurs than did mean patch size. This result is likely the influence of human contact nearer the forest edge. I recommend urgent support for reserves like Beanka, Tsimembo Forest, Ranobe PK 32, and Amoron’i Onilahy, which have highly suitable, intact forest for many lemur species. Spaces like these will be important for conserving the remarkable diversity within the sportive lemur clade. Though their distribution is largely explained by riverine barriers, I show a role for ecological niche divergence and local adaptation in accelerating allopatric speciation. These same rivers will limit their ability to track climatically suitable areas as climate change progresses: sportive lemurs as a group will lose nearly a quarter of their accessible habitat to climate change by the 2070s. While my results are focused on the particulars of lemur conservation in Madagascar, the methods I have presented here are broadly applicable to other threatened species. Piggybacking fecal sample collection onto rapid field surveys is straightforward. The possibility of obtaining whole genomes from non-invasive samples presents a new way to answer questions about local adaptation without risking injury to other arboreal study subjects, like Neotropical monkeys, or for elusive species like big cats. For threatened species, their climatic niche only dictates part of their distribution. The habitat quantification pipeline presented here takes advantage of thirty-five years of research in Madagascar to estimate species’ tolerance for forest fragmentation. While these records are impressive for primates, they are dwarfed by those available for passerines, through scientific literature and online repositories like eBird. By integrating field surveys, ecological niche modeling, and non-invasive genomics, we can begin to understand the complex threats facing species like lemurs and the options for ensuring their survival.

The genus Dryandra, in the family Proteaceae, is endemic to south-western Australia. It consists of 92 named species and is an important component of some kwongan communities. Various aspects of the ecology of three threatened species of Dryandra (Dryandra ionthocarpa, D. mimica and D. serra) were studied. Threats to these species include weed invasion, inappropriate fire regimes, disturbance from roads, recreational activities, grazing, trampling, clearing and chemical drift from adjacent farms. Knowledge presented within on the ecology and biology of these three species is needed to develop appropriate conservation and management strategies.Population measurements of plant dimensions and seed bank size were assessed. Seed banks of all three species were shown to increase with increasing plant size. D. ionthocarpa and D. serra produced large numbers of viable seeds which was related to their mode of regeneration after fire. Experimental fires killed both species and seedling recruitment occurred following the death of adult plants. This indicated that both species are nonsprouters. D. mimica produced extremely small numbers of seeds, and had a high level of barren cones. Following an experimental burn, resprouting of adult plants was observed, but no seedling recruitment, indicating that this species is a resprouter.Granivore exclusion experiments showed that the seed banks of D. ionthocarpa and D. serra increased after the application of insecticide or bagging. Granivores are therefore considered to be a significant factor limiting the size of the seed bank. Timing of attack for D. ionthocarpa was shown to occur early in inflorescence development. However, the seed predators did not start to consume the seeds until after the infructescence was almost fully developed.Translocation studies were used to investigate whether D. ionthocarpa could survive and grow on ++ / other soil types or under the same edaphic conditions in other areas. Survival after nine months was better in spongolite or heavy clay soils. The highest survival and growth was for spongolite soils in a nature reserve near to the two known populations indicating that this species will grow well, at least initially in other areas, and that this area can be considered suitable for a larger' scale translocation. Reciprocal translocations were used to assess whether D. serra shows adaptation to local conditions across its distribution. No clear pattern was found, with only seedlings from the South Sister population surviving better at their original locality. Monitoring over a longer time period is recommended to assess whether a clearer pattern develops after flowering and fruiting.Plants of D. ionthocarpa with orange leaves were found to be under greater water stress during summer and autumn than green plants. The levels of chlorophyll a and b were also lower in orange plants in summer and autumn than green plants. These differences were attributed to a drought response, and the orange colour of this species during summer can therefore be used as an indicator of the health of the populations.An important objective of these investigations was to provide baseline information that could be used in the development of conservation and recovery strategies for these species. Several management actions are recommended. The health of the D. ionthocarpa populations should be assessed regularly using the orange foliage colour and total plant numbers as indicators. In the event the population is in decline the use of small scale controlled burns in autumn is recommended to stimulate seedling recruitment. This should be undertaken in conjunction with the control of seed predators pre-burn, and the watering of any seedlings recruited post-burn, for at least the first summer. In ++ / addition, translocation to other matched sites, particularly the spongolite soils of the Kalgan Plains Nature Reserve is recommended. No exclusion from fire is deemed necessary for D. mimica, as this species appears to tolerate fire. Active management of D. serra is not considered necessary, instead the species should be monitored regularly.

Doctor of Philosophy / The African wild dog (Lycaon pictus) is one of Africa’s most endangered carnivores. Previous research into this species has focussed on the largest extant populations in Africa. However, there are a large number of relatively small populations (20 to 50 dogs) distributed across Africa, which represent an important component of the diversity of the species and its remaining habitat. This study investigated the status of a small population of wild dogs in the Lower Zambezi area in Zambia. Objectives focussed on assessing population dynamics and identifying causes of decline. Research was carried out over a broad range of topics in an effort to provide comprehensive information for conservation management of the population. The scope of the project was divided into five sections: 1) Demography and pack dynamics were assessed to identify the structure and status of the population, and the main causes of mortality. 2) An assessment of habitat types and related ecological factors was carried out to determine wild dog habitat utilisation in relation to vegetation type, prey densities and hunting success in each area. 3) The effects of interpredator competition on wild dog population dynamics was investigated, specifically, the effects of lions (Panthera leo) and spotted hyaenas (Crocuta crocuta). 4) Genetic analyses were carried out to assess the historic and contemporary genetic variability of the population, and to define patterns of geographic structuring and population differentiation. 5) Results were combined to assess the viability of the population and recommend conservation management strategies. Snaring was identified as the most important cause of adult mortality, and a threat to wild dog population persistence. Inbreeding avoidance led to the emigration of adult males and females from the area and appeared to be a substantial contributor to population decline. Limited mate selection corresponded with neither sex displaying philopatry and large dispersal distances effectively removed adults from the population. This result has important implications for the management of small populations, whereby lack of mate choice may increase dispersal distances and thereby increase edge effects on populations, regardless of home range sizes. Home range sizes were related to den locations in remote areas of the Zambian Escarpment, which was used as a breeding refuge area. The Zambezi River and Zambian Escarpment appeared to be effective barriers to wild dog home range movements. The study area contained a diversity of habitats on the alluvial terraces of the river valley floor. There was a high density of impala (Aeypceros melampus), which formed the main prey base for the wild dog population. Studies of other populations have found that wild dogs often avoided areas with high competing predator densities, which corresponded with high prey density areas. In contrast to those findings, the Lower Zambezi wild dog population showed a strong preference for high prey density areas. This population also showed only temporal avoidance of high lion density areas. Low lion density areas were preferred during breeding periods, while moderate to high lion density areas were preferred during non-breeding periods. Direct predation of adult wild dogs by lion and spotted hyaenas was rare. Kleptoparasitism of wild dog kills by either competing predator species was also rare. Predator competition was not considered to be an important determinant of population decline. The Lower Zambezi population suffered from a loss of heterozygosity, low allelic richness, and there was significant evidence of a recent population bottleneck. The population did not contain any new mtDNA haplotypes, nor any unique alleles on the commonly used microsatellite loci, but was differentiated from African wild dog populations in other regions. There was evidence of historical and recent gene flow between the Lower Zambezi and the neighbouring southern African populations of Hwange and Okavango. This was the first study to show a loss of genetic variability in a free-ranging African wild dog population. Although more immediate anthropogenic and demographic factors were the critical determinants of population decline, the loss of genetic variability has important implications for the conservation of the remaining small and fragmented wild dog populations in Africa. Results showed that due to its small size the population is likely to have suffered from inverse density dependence and Allee effects on dispersal and reproductive success. Management recommendations focussed on mitigating anthropogenic causes of mortality, and improving connectivity with a larger, potential source population to increase the probability of successful dispersal and to restore genetic diversity. The high density prey base, small home range sizes and low levels of interpredator competition detected in this study suggest that the area has the capacity to support a large and potentially viable population of wild dogs if appropriate management strategies are implemented.

This study arose from a conservation dilemma between the need to conserve a population of the endangered pink tailed legless lizard, Aprasia parapulchella and crucial upgrading of Canberra's sewerage treatment plant. The study focused on conservation biology and how it could be applied to the management of A. parapulchella. As little biological information was available on A. parapulchella, research was focused on obtaining data that would be beneficial in the conservation management of the species. This included the dietary and habitat requirements, population status and structure and population relocation and habitat restoration. A. parapulchella was found to occur in low relative densities at all sites (maximum 9.1 lizards per 1000 rocks turned, Mt Taylor). Populations of the species appear to be larger than has been considered previously, however numbers are still below 500 individuals per site. Sexual dimorphism is present in the species with females achieving longer snout-vent lengths than males. Sex ratios were equal in all sites, however average size of lizards was different at the four main study sites, indicating differences in population structure. The life history of A. parapulchella can be summarised as long-lived, late maturing (3rd or 4lh year of life) with a low reproductive rate (single clutch of two eggs per year). A. parapulchella is a dietary specialist feeding on about 11 different species of ants. Interestingly, the lizards also live with the same species that they feed upon. By far the most important species in the diet and homesite requirements of A. parapulchella is the ant Iridomyrmex rufoniger. A. parapulchella shows positive selection towards the species in homesite choice, is found most commonly in the nests of this ant, and selects its brood over the brood of other ant species in diet experiments. In addition this ant was represented in the diet of A. parapulchella more commonly than any other ant. The relationship between ants and A. parapulchella appears to be unique and the mechanisms of this specialisation require further investigation. The vegetation associations where A. parapulchella occur are different across the range of the species. Sites at Bendigo and West Wyalong support mallee communities, while in the ACT region, Bathurst and Tarcutta, A. parapulchella appears to be a habitat specialist, being found most commonly in sites dominated by grass species, both native and introduced. A. parapulchella lives beneath rocks in grassland sites. Rocks that the species uses for homesites are commonly between 100 and 150 mm wide, 120-220 mm long and 50 and 150 mm thick. There were significant differences between the sizes of rocks used at different sites and between different seasons. Rocks used by females were significantly larger than rocks used by juvenile lizards. Twelve other species of reptile were found to use rocks in grassland sites, with rocks partitioned within the community on the basis of size and shape. An experimental relocation of A. parapulchella was conducted to try to determine ideal habitat conditions for the survival of relocated individuals. Unfortunately of the 114 lizards released, only 15 were recaptured. Although recaptures were low, trends indicated that treatments of Themeda triandra and very high rock densities had the highest survival rates. Key habitat variables were reinstated at the Lower Molonglo Dam site however restoration is preliminary with more time needed for the habitat to be suitable for occupation by A. parapulchella. What started as a situation that was likely to have a deleterious impact on A. parapulchella has been turned into a conservation success story. Without the involvement of ACT Electricity and Water, much of the basic biology of A. parapulchella would still be unknown. The findings will now form a solid basis from which to effectively conserve A. parapulchella. The project provides an example of the conservation success that can be achieved between industry and conservation partnerships.

Understanding the life history response of animal populations to environmental selection pressure is a central research theme in evolutionary ecology and conservation biology. Our current knowledge of life history traits in animal populations is, however, mostly based on studies conducted on temperate systems, contrasting with the fact that a large number of species live in the tropics. The roseate tern (Sterna dougallii) is a oceanic seabird showing mainly a tropical distribution with a relatively fragile conservation status, making it an interesting case study. In this thesis, ten years of data (1998-2007) were used to determine the main demographic traits of the tropical roseate tern population breeding on Aride Island, Seychelles (western Indian Ocean), and to explore their relation with environmental factors. We focused on the estimation of reproductive success, age at first reproduction (sexual maturation) and age-specific survival probabilities in relation to both oceanography of the study area (food availability) and quality of the breeding habitat. By using chlorophyll concentrations as a proxy measure of marine fish stocks, we showed that the overall low reproductive success in this population (range 0.0 0.57 chick/pair) is mainly dictated by the strong inter-annual fluctuations in local food supply conditions around Aride Island. Reproductive success was also found to be related to the spatial variation in vegetation characteristics of the nesting (woodland) habitat used by the terns. Birds nesting in densely-vegetated areas with a closed canopy cover had higher chick mortalities, presumably through a high level of parasitism by ticks, when compared to those breeding in more open areas such as forest clearings. By relying on capture-mark-recapture methods, age of first reproduction was estimated at 3-4 years and age-specific survival probabilities at 0.62, 0.77 and 0.81 in juveniles (1-year), immature individuals (2-years), and breeding adults (3-years and older), respectively. Most of these demographic parameters were also found to be influenced by oceanographic conditions (e.g. Indian ocean Dipole) and the levels of tick infestation during the chick-growing period. We further show how these vital rates can be incorporated into a simple population viability analysis in order to model population dynamics (i.e. population growth rate) and, ultimately, to provide local managers with conservation measures. Finally, the contribution of this work to the global knowledge of tropical seabird life histories is discussed through a comparison with demographic parameters of temperate roseate tern populations.

It is an unresolved paradox that non-native species are successful in novel environments whereas native species, presumably adapted to that environment, decline. This knowledge gap has persisted because third party processes in invasion ecology have been overlooked. Ungulate densities are increasing due to the eradication of predators and landscape change and I asked how herbivory and invasion might interact to cause declines of native species. In Garry oak meadows, Canada’s most endangered ecosystem, native forbs have declined relative to non-native grasses and I tested the facilitatory role of herbivory in that degradation. My investigations, novel to the field, were conducted on islands spanning the Canada-US border. Islands served as natural experimental units in a mensurative study of abundance patterns in seven plant groups and 15 focal species along gradients of herbivory, biogeography, soil depth, and human activities. Increasing ungulate densities were related to declines in abundances of native forbs, and increasing abundances of non-native annual grasses. These regional patterns were upheld by two plot-based, 2x2 factorial experiments that contrasted the fitness of native species under manipulations of herbivory and competition for light. Specifically, I showed that ungulates limited the establishment, growth, survival and reproduction of seedlings and transplanted native forbs and shrubs and that competition from non-native species had little effect. I also calculated forage selectivity indices and tested the efficacy of fencing and cutting to reduce competition, for the restoration of native community biomass. Non-native annual grasses were rarely browsed and increased with increasing ungulate density. Non-native perennial grasses declined with herbivory, however, their regional abundances were unaffected by ungulate density despite being preferentially foraged. That non-native annual and perennial grasses differed in their responses to herbivory has consequences for restoration and illustrates the challenge of developing a comprehensive theory of invasion. Reducing ungulates, necessary for the recovery of native forbs, also benefits non-native perennial grasses and therefore their removal speed recovery of Garry oak meadows. Despite advances in invasion ecology, scientists and managers are disconnected and research is rarely implemented. I conclude by proposing seven solutions to facilitate the integration of science into management.