Historically, Acropora cervicornis was found in high densities on many Caribbean, Florida, and Gulf of Mexico reefs. A disease outbreak in the late 1970s and 80s caused up to 99% loss of A. cervicornis cover at some sites, leaving populations sparsely distributed throughout its range and typically found as isolated colonies. Even though populations are depauperate causing a decrease in sexual reproduction, its fast growth rate and ability to reproduce through asexual fragmentation affords this species the potential for quick recovery and population growth. However, limited to no natural recovery has been documented. Many of these populations are poorly studied because most monitoring programs are not designed to capture A. cervicornis’ unique life history characteristics. Its patchy distribution, complex growth form, frequent fragmentation, and dislodgment present a challenge for long term tracking. Furthermore, its ability to exist from small isolated colonies to semi-continuous patches spanning hectares makes defining individuals to assess abundance, survival, health, and growth a difficult task. The aim of this dissertation was to develop a species-specific monitoring protocol to describe the abundance and cover of A. cervicornis and the effects of disease, predation, and disturbance events across space and time. The monitoring protocol was developed and used across three sub-regions of the Florida Reef Tract (Broward County, Middle Keys, and Dry Tortugas). Several permanent 3.5 m radial plots were installed across multiple sites in each sub-region. A species census, percent cover, and demographic data of a sub-set of colonies were collected three times per year (winter, summer, and fall) from 2008-2016. These results were then used to assist in designing and testing optimal outplant strategies. Outplanting occurred at seven sites in Broward County, FL between 2012- 2015. Experiments were designed to assess the effects outplant colony density, host genotype, colony size, and attachment technique had on colony survival, growth, and health. The monitoring protocol was successfully used for identifying spatial and temporal patterns and trends in cover, disease, and predation on A. cervicornis across a range of population sizes. Percent cover of living A. cervicornis declined significantly during the duration of the project. Disease prevalence and occurrence was highest during the summer. Colony size and volume increased with depth and were the largest in the Broward County sub-region. Disease caused the most mortality, however fireworms were the most prevalent cause of recent mortality. Disease and predation were more prevalent on masses (individuals larger than 1.5 m in diameter). The outplant experiments showed that colony survival and health were greatest when colonies had greater than 15 cm in total tissue and in densities less than 1 col/m2. Host genotype and outplant site had variable effects on survival and growth. Outplanted colonies quickly acclimated to their environment and increased colony abundance within sites by fragmentation. Prevalence of disease and predation were lower on outplanted colonies than wild colonies. Frequent disturbances such as tropical storms, hurricanes, and disease events caused increased, prolonged, and widespread mortality and fragmentation, however periods void of disturbances resulted in recovery and growth. Therefore, reducing the effects of climate change and determining and decreasing the causes of disease could promote species recovery. In the meantime, population enhancement by outplanting is a viable way to assist species conservation and recovery.

Porites lobata is an important reef building coral in the tropical eastern Pacific and the dominant Porites species in the Galápagos archipelago. Following the 1982-83 El Niño-Southern Oscillation the Galápagos Islands experienced 97-99% coral mortality, leaving many areas throughout the archipelago denuded of corals. Because very few long term assessments have been conducted on the growth and resilience of P. lobata to natural disturbances in the Galápagos Islands (Glynn et al., 2001; Glynn et al., 2009), benthic surveys were performed on a uniquely dense aggregation of P. lobata colonies at Devil’s Crown, Floreana Island between 1993 and 2011. Annual changes in live tissue area were calculated for the majority of the population (n=17) using Coral Point Count with Excel extensions (CPCe 3.6) software to determine growth and recovery trends for this aggregation. Total live tissue area (n=10) increased from 1993 to 2011, however due to high interannual variability this increase was not significant. Within this overall pattern, a general trend of decline was observed in live tissue cover from 1993 to 2000, with increases in tissue area observed from 2000 to 2011. Severe bleaching (85-100%) was observed during the 1998 survey, followed by 42% tissue loss (n=10), coinciding with sea water warming associated with the very strong 1997-1998 El Niño-Southern Oscillation event. Subsequent regrowth of coral tissue was observed during the 2001 survey with continued recovery through 2009. Multiple comparison testing revealed a significant difference between the impacted state (1999) and the recovered state (2009), (p = 0.002, Dunn’s method, n=17), suggesting this aggregation required a period of ten years to recover from this disturbance. During this recovery period the moderately strong 2007-2008 La Niña, with accompanying stressful low temperatures, occurred but did not interrupt tissue regrowth. Warmer than average sea surface temperatures occurred during the warm months from 2008 to 2011, during which time a cool period occurred from 2010 to 2011. While the magnitude and duration of temperature anomalies during warming were not as great as those observed during the 1997-98 ENSO, low temperatures observed during the cool period were similar to those experienced throughout the 2007-08 La Niña. During this time total live tissue cover was reduced by 19% (n=10); however it is unknown whether this was due to warming or the following cool period. Based on results from the 1997-98 El Niño and 2007-08 La Niña, this reduction in live tissue was most likely caused by elevated sea surface temperatures. Data on the growth and resilience of P. lobata populations at Devil’s Crown will be used for conservation and management of this important resource.