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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Characterization of interactions of the Type IV secretion system core component VirB8

Sivanesan, Durga 09 1900 (has links)
<p> Type IV secretion systems (T4SS) are essential for the virulence of many gram-negative pathogens. The systems studied here comprise eleven VirB proteins in case of Agrobacterium tumefaciens and twelve in case of Brucella suis. The VirB proteins associate in the cell envelope and form a complex that mediates the translocation of virulence factors into host cells. In this report, VirB8, a core component of T4SS, is characterized with regards to its interaction with itself and with other VirB proteins. </p> <p> VirB8 was found to exist in monomer-dimer equilibrium and the self-association was demonstrated by analytical ultracentrifugation, analytical gel filtration, surface plasmon resonance and bacterial two-hybrid assay. The above experiments demonstrated that residues M102, Y105 and E214 o fVirB8 from B. suis are involved in self-association and mutagenesis of these residues led to the impairment of T4SS function in B. suis. Furthermore, this information was utilized to unravel the contribution of VirB8 self-association towards T4SS assembly and function. To this end dimerization variants of VirB8 from Agrobacterium tumefaciens were created and the effects were assessed with purified proteins in vitro. Following this, the effects of VirB8 dimer site changes were assessed in vivo. Introduction of a cysteine residue at the predicted interface (V97C) supported DNA transfer but not T-pilus formation. Variants that reduced the self-association did not support T4SS functions and T-pilus formation. Moreover, VirB2- VirB5 co-fractionated with high molecular mass components from membranes of A. tumefaciens and VirB8 dimerization was shown to be necessary for VirB2 association with the high molecular mass components. Using purified VirB8 and VirB5 it was shown that VirB5 interacts with VirB8 via its globular domain and this interaction dissociates VirB8 dimers. Taking these results together, a mechanistic contribution of VirB8 dimerization to T4SS assembly was proposed. </p> <p> Next, the interactions of VirB8 with other core components (VirB9 and VirBlO) were analyzed by using various in vitro and in vivo experiments. Purified soluble periplasmic domains of VirB8, VirB9 and VirB10 were used in enzyme-linked immunosorbent assays, circular dichroism, and surface plasmon resonance experiments. The pair-wise interactions and self-association of VirB8, VirB9 and VirB 10 were demonstrated with the in vitro experiments. In addition, a ternary complex formation between VirB8, VirB9, and VirBlO was identified. Using the bacterial two-hybrid system, the dynamics of the interactions between VirB8-VirB9-VirB 10 full-length proteins were analyzed demonstrating that VirB9 stimulates VirB8 self-association, but that it inhibits the VirB10-VirB10 as well as the VirB8-VirB10 interaction. Based on these results, a dynamic model for secretion system assembly is proposed where VirB8 plays a role as an assembly factor that is not closely associated with the functional core complex comprising VirB9 and VirB10. </p> <p> The work reported in this thesis advances the understanding of VirB8 self-association and its contribution to T4SS assembly and function. Furthermore, the establishment of the bacterial two-hybrid system to detect VirB interactions has helped identify inhibitors for the VirB8 dimerization through collaboration with Dr. Athanasios Paschos. Moreover, techniques such as ELISA, analytical ultracentrifugation, circular dichroism and surface plasmon resonance will be utilized routinely to characterize other VirB-VirB interactions in future. </p> / Thesis / Doctor of Philosophy (PhD)
2

Deriving Operational Principles for the Design of Engaging Learning Experiences

Swan, Richard Heywood 18 July 2008 (has links) (PDF)
The issue of learner engagement is an important question for education and for instructional design. It is acknowledged that computer games in general are engaging. Thus, one possible solution to learner engagement is to integrate computer games into education; however, the literature indicates that pedagogical, logistical and political barriers remain. Another possible solution is to derive principles for the design of engaging experiences from a critical examination of computer game design. One possible application of the derived design principles is that instruction may be designed to be inherently more engaging. The purpose of this dissertation was to look for operational principles underlying the design of computer games in order to better understand the design of engaging experiences. Core design components and associated operational principles for the design of engaging experiences were identified. Selected computer games were analyzed to demonstrate that these components and principles were present in the design of successful computer games. Selected instructional units were analyzed to show evidence that these operational principles could be applied to the design of instruction. An instructional design theory—called Challenge-driven Instructional Design—and design considerations for the theory were proposed. Finally, suggestions were made for continued development and research of the instructional design theory.

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